def toJSON(self):
ret = State.toJSON(self)
ret['backgroundprob'] = self.backgroundProbability
ret['time'] = self.time
ret['transitionmatrix'] = self.transitionMatrix
if self.consensusDistribution != None:
ret['consensusdistribution'] = \
dist_to_json(self.consensusDistribution)
if self.repeatLengthDistribution != None:
ret['repeatlengthdistribution'] = \
dist_to_json(self.repeatLengthDistribution)
ret['trackemissions'] = self.trackEmissions
if self.version != None:
ret['version'] = self.version
if self.repProb != None:
ret['repprob'] = float(self.repProb)
#TODO: save consensus distribution
return ret
def toJSON(self):
ret = PairRepeatState.toJSON(self)
del ret['consensusdistribution']
ret['maxK'] = self.maxK
ret['time'] = self.time
ret['backgroundprob'] = dist_to_json(self.backgroundProb)
ret['indelprob'] = self.indelProb
ret['indelextprob'] = self.indelExtProb
ret['repeatprob'] = self.repeatProb
ret['endprob'] = self.endProb
ret['silendprob'] = self.silEndProb
ret['initendprob'] = self.initEndProb
return ret
