def standardinit(config, base, pos, final, R=8):
##
print('Initial condition from standard reconstruction')
bs, nc = config['boxsize'], config['nc']
if abs(base.mean()) > 1e-6:
base = (base - base.mean()) / base.mean()
pfin = tools.power(final, boxsize=bs)[1]
ph = tools.power(1 + base, boxsize=bs)[1]
bias = ((ph[1:5] / pfin[1:5])**0.5).mean()
print('Bias = ', bias)
g = standardrecon(config, base, pos, bias, R=R)
with tf.Session(graph=g) as sess:
sess.run(tf.global_variables_initializer())
tfdisplaced = g.get_tensor_by_name('displaced:0')
tfrandom = g.get_tensor_by_name('random:0')
displaced, random = sess.run([tfdisplaced, tfrandom])
displaced /= displaced.mean()
displaced -= 1
random /= random.mean()
random -= 1
recon = displaced - random
return recon
def savehalofig(truemesh, reconmesh, fname, hgraph, boxsize, title=''):
'''Given a graph, list of 3 fields in truemesh & recon-init
create the diagnostic figure, 3X3
'''
truelin, truefin, truedata = truemesh
with tf.Session(graph=hgraph) as sessionh:
sessionh.run(tf.global_variables_initializer())
gh = sessionh.graph
linmesh_t = gh.get_tensor_by_name('linmesh:0')
datamesh_t = gh.get_tensor_by_name('datamesh:0')
linear_t = gh.get_tensor_by_name('linear:0')
final_t = gh.get_tensor_by_name('final:0')
samples_t = gh.get_tensor_by_name('samples:0')
linear, final, data = sessionh.run(
[linear_t, final_t, samples_t], {
linmesh_t: reconmesh,
datamesh_t: np.expand_dims(truedata, -1) * 0
})
fig, ax = plt.subplots(3, 3, figsize=(12, 12))
meshes = [[truelin, linear], [truefin, final], [truedata, data]]
labels = ['Linear', 'Final', 'Data']
for i in range(3):
m1, m2 = meshes[i][0], meshes[i][1]
if m1.mean() < 1e-6:
m1, m2 = m1 + 1, m2 + 1
k, pt = tools.power(m1, boxsize=boxsize)
k, pr = tools.power(m2, boxsize=boxsize)
k, px = tools.power(m1, m2, boxsize=boxsize)
ax[0, 0].semilogx(k, px / (pr * pt)**.5, 'C%d' % i, label=labels[i])
ax[0, 1].semilogx(k, pr / pt, 'C%d' % i)
ax[0, 2].loglog(k, pt, 'C%d' % i)
ax[0, 2].loglog(k, pr, 'C%d--' % i)
ax[1, i].imshow(m2.sum(axis=0))
ax[2, i].imshow(m1.sum(axis=0))
ax[2, 0].set_ylabel('Truth')
ax[1, 0].set_ylabel('Recon')
ax[0, 0].set_title('Cross Correlation')
ax[0, 0].set_ylim(-0.1, 1.1)
ax[0, 1].set_title('Transfer Function')
ax[0, 1].set_ylim(-0.1, 2)
ax[0, 2].set_title('Powers')
ax[0, 2].set_ylim(1, 1e5)
ax[0, 0].legend()
for axis in ax.flatten():
axis.grid(which='both', lw=0.5, color='gray')
fig.suptitle(title)
fig.tight_layout(rect=[0, 0, 1, 0.95])
fig.savefig(fname)
def savefig(truemesh, reconmesh, fname):
fig, ax = plt.subplots(2, 3, figsize=(12, 8))
k, pt = tools.power(1 + truemesh, boxsize=bs)
k, pr = tools.power(1 + reconmesh, boxsize=bs)
k, px = tools.power(1 + truemesh, 1 + reconmesh, boxsize=bs)
ax[0, 0].semilogx(k, px / (pr * pt)**.5, 'C0')
ax[1, 0].semilogx(k, pr / pt, 'C0')
ax[0, 1].loglog(k, pt)
ax[1, 1].loglog(k, pr)
ax[0, 2].imshow(truemesh.sum(axis=0))
ax[1, 2].imshow(reconmesh.sum(axis=0))
for axis in ax.flatten():
axis.grid(which='both', lw=0.5, color='gray')
fig.tight_layout()
fig.savefig(fname)
def setupbias(self, traindata, nsims = 10, cutoff=1.5):
args = self.args
bs, nc = args.bs, args.nc
b1, b2, perr = [], [], []
for i in range(nsims):
idx = np.random.randint(0, traindata.shape[0], 1)
xx = traindata[idx, 0].astype(np.float32)
yy = traindata[idx, 1].astype(np.float32)
_, fpos = self.pmpos(tf.constant(xx))
fpos = fpos[0].numpy() *bs/nc
bparams, bmodel = getbias(bs, nc, yy[0]+1, xx[0], fpos)
bmodeltf = self.biasfield(xx, tf.constant([bparams[0], bparams[1]], dtype=tf.float32)).numpy()
errormesh = yy - bmodeltf# np.expand_dims(bmodel, 0)
kerror, perror = tools.power(errormesh[0]+1, boxsize=bs)
kerror, perror = kerror[1:], perror[1:]
perr += [perror]
b1 += [bparams[0]]
b2 += [bparams[1]]
print("b1 : %0.3f $\pm$ %0.2f"%(np.array(b1).mean(), np.array(b1).std()))
print("b2 : : %0.3f $\pm$ %0.2f"%(np.array(b2).mean(), np.array(b2).std()))
b1, b2 = np.array(b1).mean(), np.array(b2).mean()
perr = np.array(perr).mean(axis=0)
kny = nc*np.pi/bs
cutoff = 1.5
perr[np.where(kerror > cutoff*kny)] = perr[np.where(kerror > cutoff*kny)[0][0]]
ipkerror = interp1d(kerror, perr, bounds_error=False, fill_value=(perr[0], perr.max()))
errormesh = tf.expand_dims(tf.constant(ipkerror(args.kmesh), dtype=tf.float32), 0)
#ipkerror = lambda x: 10**np.interp(np.log10(x), np.log10(kerror), np.log10(perr))
#errormesh = tf.constant(ipkerror(args.kmesh), dtype=tf.float32)
bias = tf.constant([b1, b2], dtype=tf.float32)
return bias, errormesh
def setupbias(nsims = 10, cutoff=1.5):
b1, b2, perr = [], [], []
for i in range(nsims):
idx = np.random.randint(0, traindata.shape[0], 1)
xx = traindata[idx, 0].astype(np.float32)
yy = traindata[idx, 1].astype(np.float32)
_, fpos = pmpos(tf.constant(xx))
fpos = fpos[0].numpy() *bs/nc
bparams, bmodel = getbias(bs, nc, yy[0]+1, xx[0], fpos)
errormesh = yy - np.expand_dims(bmodel, 0)
kerror, perror = tools.power(errormesh[0]+1, boxsize=bs)
kerror, perror = kerror[1:], perror[1:]
perr += [perror]
b1 += [bparams[0]]
b2 += [bparams[1]]
print("b1 : %0.3f $\pm$ %0.2f"%(np.array(b1).mean(), np.array(b1).std()))
print("b2 : : %0.3f $\pm$ %0.2f"%(np.array(b2).mean(), np.array(b2).std()))
b1, b2 = np.array(b1).mean(), np.array(b2).mean()
perr = np.array(perr).mean(axis=0)
kny = nc*np.pi/bs
perr[np.where(kerror > cutoff*kny)] = perr[np.where(kerror > cutoff*kny)[0][0]]
ipkerror = lambda x: 10**np.interp(np.log10(x), np.log10(kerror), np.log10(perr))
errormesh = tf.constant(ipkerror(kmesh), dtype=tf.float32)
return b1, b2, errormesh
def get_diff_spectra(args, ipklin, nsims=10, nsteps=3):
bs, nc = args.bs, args.nc
nsims = args.nsims
numd = args.numd
try: R=args.Rstd
except: R=128
ncf=args.ncf
path = '//mnt/ceph/users/cmodi/cosmo4d/z00/'
dpath = path + '/L%04d_N%04d_D%04d//'%(bs, nc, numd*1e4)
alldata = np.array([np.load(dpath + 'S%04d.npy'%i) for i in range(100, 100+nsims)]).astype(np.float32)
initdata = np.array([np.load(dpath + 'stdR%d_S%04d.npy'%(R,i)) for i in range(100, 100+nsims)]).astype(np.float32)
try:
dyn = "%02dstep"%nsteps
path = '//mnt/ceph/users/cmodi/cosmo4d/z00/'
path = path + '/L%04d_N%04d_%s//'%(bs, nc, dyn)
final = np.array([tools.readbigfile(path + '/L%04d_N%04d_S%04d_%02dstep/mesh/d/'%(bs, nc, seed, nsteps)) for seed in range(100, 100+nsims)]).astype(np.float32)
except:
dyn = "%02dstep_B1"%nsteps
path = '//mnt/ceph/users/cmodi/cosmo4d/z00/'
path = path + '/L%04d_N%04d_%s//'%(bs, nc, dyn)
final = np.array([tools.readbigfile(path + '/L%04d_N%04d_S%04d_%02dstep/mesh/d/'%(bs, nc, seed, nsteps)) for seed in range(100, 100+nsims)]).astype(np.float32)
print('alldata shape :', alldata.shape)
pdiffs, bb = [], []
for j in range(nsims):
k, pfin = tools.power(final[j], boxsize=bs)
ph = tools.power(1+alldata[j, 1], boxsize=bs)[1]
bias = ((ph[1:5]/pfin[1:5])**0.5).mean()
bb.append(bias)
recon = initdata[j] / bias
precon =tools.power(1+recon, boxsize=bs)[1]
pdiff = ipklin(k) - precon
pdiffs.append(pdiff)
pdiff = np.array(pdiffs).mean(axis=0)
bias = np.array(bb).mean(axis=0)
xx, yy = k[pdiff > 0], pdiff[pdiff > 0]
ipkdiff = lambda x: 10**np.interp(np.log10(x), np.log10(xx), np.log10(yy))
return ipkdiff, bias
def fib(n):
"""finds nth fibonacci number in logarithmic time"""
goldenRatio = (1 + 5 ** 0.5) / 2
sequence = 0, 1, 1
try:
return sequence[n]
except IndexError:
binetApprox = power(goldenRatio, n) / (5 ** 0.5)
if n % 2 == 0:
return int(binetApprox)
return int(1 + binetApprox)
def save2ptfig(i, iterand, truth, fpath, bs, fsize=12, save=True, retfig=False):
ic, fin = truth
ic1, fin1 = iterand
pks = []
if abs(ic1[0].mean()) < 1e-3: ic1[0] += 1
#if abs(ic[0].mean()) < 1e-3: ic[0] += 1
k, p1 = tools.power(ic1[0]+1, boxsize=bs)
k, p2 = tools.power(ic[0]+1, boxsize=bs)
k, p12 = tools.power(ic1[0]+1, f2=ic[0]+1, boxsize=bs)
pks.append([p1, p2, p12])
if fin1[0].mean() < 1e-3: fin1[0] += 1
if fin[0].mean() < 1e-3: fin[0] += 1
k, p1 = tools.power(fin1[0], boxsize=bs)
k, p2 = tools.power(fin[0], boxsize=bs)
k, p12 = tools.power(fin1[0], f2=fin[0], boxsize=bs)
pks.append([p1, p2, p12])
fig, ax = plt.subplots(1, 3, figsize=(12,3.5))
ax[0].plot(k, pks[0][0], 'C0', lw=2, label='Recon')
ax[0].plot(k, pks[0][1], 'C0--', lw=2, label='Truth')
ax[0].plot(k, pks[1][0], 'C1', lw=2)
ax[0].plot(k, pks[1][1], 'C1--', lw=2)
ax[0].loglog()
ax[0].set_ylabel('P(k)')
p1, p2, p12 = pks[0]
ax[1].plot(k, p12/(p1*p2)**0.5, 'C0', lw=2, label='Init')
ax[2].plot(k, (p1/p2)**0.5, 'C0', lw=2, label='')
p1, p2, p12 = pks[1]
ax[1].plot(k, p12/(p1*p2)**0.5, 'C1', lw=2, label='Final')
ax[2].plot(k, (p1/p2)**0.5, 'C1', lw=2, label='')
ax[1].semilogx()
ax[2].semilogx()
ax[1].set_ylim(-0.1, 1.1)
ax[2].set_ylim(-0.1, 2.)
ax[1].set_ylabel('Cross correlation', fontsize=fsize)
ax[2].set_ylabel('Transfer Function', fontsize=fsize)
for axis in ax:
axis.legend(fontsize=fsize)
axis.grid(which='both')
axis.set_xlabel('k (h/Mpc)', fontsize=fsize)
plt.tight_layout()
if save:
plt.savefig(fpath + '/recon2pt%s.png'%str(i))
plt.close()
if retfig: return fig, ax
def get_ps(iterand, truth):
ic, fin = truth
ic1, fin1 = iterand
pks = []
if abs(ic1[0].mean()) < 1e-3: ic1[0] += 1
#if abs(ic[0].mean()) < 1e-3: ic[0] += 1
k, p1 = tools.power(ic1[0]+1, boxsize=bs)
k, p2 = tools.power(ic[0]+1, boxsize=bs)
k, p12 = tools.power(ic1[0]+1, f2=ic[0]+1, boxsize=bs)
pks.append([p1, p2, p12])
if fin1[0].mean() < 1e-3: fin1[0] += 1
if fin[0].mean() < 1e-3: fin[0] += 1
k, p1 = tools.power(fin1[0], boxsize=bs)
k, p2 = tools.power(fin[0], boxsize=bs)
k, p12 = tools.power(fin1[0], f2=fin[0], boxsize=bs)
pks.append([p1, p2, p12])
return k, pks
import tools
import matplotlib.pyplot as plt
bs, nc = 400, 128
seed = 100
numd = 1e-3
ofolder = './saved/L%04d_N%04d_S%04d_n%02d/anneal4/nc0norm-truth/' % (
bs, nc, seed, numd * 1e4)
figfolder = ofolder + 'figs/'
try:
os.makedirs(figfolder)
except:
pass
truemesh = np.load(ofolder + 'truth.f4.npy')
k, pt = tools.power(1 + truemesh, boxsize=bs)
fig, ax = plt.subplots(1, 2, figsize=(9, 4), sharex=True)
#iters = [0, 100, 200, 300, 500]
iters = [1000, 600, 700, 800, 900]
subf = 'R20'
reconfile = '/%s/iter1000.f4.npy' % subf
nit = 1000
for j, it in enumerate(iters):
reconmesh = np.load(ofolder + '/%s/iter%d.f4.npy' % (subf, it))
k, pr = tools.power(1 + reconmesh, boxsize=bs)
k, px = tools.power(1 + truemesh, 1 + reconmesh, boxsize=bs)
ax[0].plot(k, px / (pr * pt)**.5, 'C%d' % j, label=it)
ax[1].plot(k, pr / pt, 'C%d' % j)
mesh['predict'] = dtools.uncubify(recp[:,:,:,:,0], shape)
meshes[seed] = [mesh, hmesh]
print('All the predictions have been generated for seed = %d'%seed)
##############################
##Power spectrum
kk = tools.fftk(shape, bs)
kmesh = sum(i**2 for i in kk)**0.5
fig, ax = plt.subplots(1, 2, figsize = (10, 4))
for seed in seeds:
predict, hpmeshd = meshes[seed][0]['predict'], meshes[seed][1]['target'],
k, pkpred = tools.power(predict/predict.mean(), boxsize=bs, k=kmesh)
k, pkhd = tools.power(hpmeshd/hpmeshd.mean(), boxsize=bs, k=kmesh)
k, pkhx = tools.power(hpmeshd/hpmeshd.mean(), predict/predict.mean(), boxsize=bs, k=kmesh)
#k, pkpredall = tools.power(predictall/predictall.mean(), boxsize=bs, k=kmesh)
#k, pkhallx = tools.power(hpmeshd/hpmeshd.mean(), predictall/predictall.mean(), boxsize=bs, k=kmesh)
##
ax[0].semilogx(k, pkpred/pkhd, label=seed)
ax[1].semilogx(k, pkhx/(pkpred*pkhd)**0.5)
# plt.plot(k, pkpredall/pkhd)
ax[0].legend(fontsize=14)
ax[0].set_title('Trasnfer function', fontsize=14)
ax[1].set_title('Cross correlation', fontsize=14)
for axis in ax: axis.set_ylim(0., 1.1)
for axis in ax: axis.set_yticks(np.arange(0, 1.1, 0.1))
for axis in ax: axis.grid(which='both')
def all_sim():
path = '//mnt/ceph/users/cmodi/cosmo4d/z00/'
dyn = "%02dstep_B1"%nsteps
dynf = "%02dstep_B1"%nstepsf
hpath = path + '/L%04d_N%04d_%s//'%(bs, ncf, dynf)
path = path + '/L%04d_N%04d_%s//'%(bs, nc, dyn)
for seed in range(100, 601):
print(seed)
ic = tools.readbigfile(path + '/L%04d_N%04d_S%04d_%02dstep/mesh/s/'%(bs, nc, seed, nsteps))
final = tools.readbigfile(path + '/L%04d_N%04d_S%04d_%02dstep/mesh/d/'%(bs, nc, seed, nsteps))
hpos = tools.readbigfile(hpath + '/L%04d_N%04d_S%04d_%02dstep/FOF/PeakPosition/'%(bs, ncf, seed, nstepsf))[:num]
hmassall = tools.readbigfile(hpath + '/L%04d_N%04d_S%04d_%02dstep/FOF/Mass/'%(bs, ncf, seed, nstepsf)).flatten()
hmass = hmassall[:num]
hmeshpos = tools.paintcic(hpos, bs, nc)
hmeshmass = tools.paintcic(hpos, bs, nc, hmass.flatten()*1e10)
hmeshmass /= hmeshmass.mean()
hmeshmass -= 1
hmeshpos /= hmeshpos.mean()
hmeshpos -= 1
if posdata:
data = tf.constant(hmeshpos.reshape(1, nc, nc, nc), dtype=tf.float32)
else: data = tf.constant(hmeshmass.reshape(1, nc, nc, nc), dtype=tf.float32)
base = hmeshpos
pfin = tools.power(final, boxsize=bs)[1]
ph = tools.power(1+base, boxsize=bs)[1]
bias = ((ph[1:5]/pfin[1:5])**0.5).mean()
tfdisplaced, tfrandom = standardrecon(data, tf.expand_dims(tf.constant(hpos, dtype=tf.float32), 0),
tf.constant(bias, dtype=tf.float32), R=tf.constant(R, dtype=tf.float32))
displaced, random = tfdisplaced.numpy()[0], tfrandom.numpy()[0]
displaced /= displaced.mean()
displaced -= 1
random /= random.mean()
random -= 1
recon = np.squeeze(displaced - random)
savepath = '//mnt/ceph/users/cmodi/cosmo4d/z00/L%04d_N%04d_D%04d//'%(bs, nc, numd*1e4)
np.save(savepath + 'stdR%d_S%04d'%(R, seed), recon)
if seed == 100:
import matplotlib.pyplot as plt
plt.figure(figsize = (9, 4))
plt.subplot(131)
plt.imshow(ic.sum(axis=0))
plt.subplot(132)
plt.imshow(data.numpy()[0].sum(axis=0))
plt.subplot(133)
plt.imshow(recon.sum(axis=0))
plt.savefig('tmp.png')
plt.close()
print(ic.mean(), recon.mean())
k, p1 = tools.power(ic+1, boxsize=bs)
p2 = tools.power(recon+1, boxsize=bs)[1]
px = tools.power(ic+1, f2=recon+1, boxsize=bs)[1]
plt.plot(k, p2/p1)
plt.plot(k, px/(p1*p2)**0.5, '--')
plt.semilogx()
plt.savefig('tmp2.png')
plt.close()
def check_module(modpath):
print('Test module')
tf.reset_default_graph()
module = hub.Module(modpath + '/likelihood/')
xx = tf.placeholder(tf.float32,
shape=[None, None, None, None, nchannels],
name='input')
yy = tf.placeholder(tf.float32,
shape=[None, None, None, None, ntargets],
name='labels')
samples = module(dict(features=xx, labels=yy), as_dict=True)['sample']
loglik = module(dict(features=xx, labels=yy),
as_dict=True)['loglikelihood']
preds = {}
with tf.Session() as sess:
sess.run(tf.initializers.global_variables())
for seed in seeds:
xxm = np.pad(meshes[seed][0]['cic'], pad, 'wrap')
#yym = np.stack([np.pad(meshes[seed][1]['pnncen'], pad, 'wrap'), np.pad(meshes[seed][1]['pnnsat'], pad, 'wrap')], axis=-1)
yym = np.stack([meshes[seed][1][i] for i in tgname], axis=-1)
print(xxm.shape, yym.shape)
preds[seed] = sess.run(samples,
feed_dict={
xx:
np.expand_dims(np.expand_dims(xxm, -1),
0),
yy:
np.expand_dims(yym, 0)
})
meshes[seed][0]['predict'] = preds[seed][:, :, :, :].sum(axis=-1)
meshes[seed][0]['predictcen'] = preds[seed][:, :, :, 0]
meshes[seed][0]['predictsat'] = preds[seed][:, :, :, 1]
##############################
##Power spectrum
shape = [nc, nc, nc]
kk = tools.fftk(shape, bs)
kmesh = sum(i**2 for i in kk)**0.5
fig, ax = plt.subplots(2, 3, figsize=(12, 8))
for seed in seeds:
for i, key in enumerate(['cen', 'sat']):
predict, hpmeshd = meshes[seed][0]['predict%s' %
key], meshes[seed][1]['pnn%s' %
key],
k, pkpred = tools.power(predict / predict.mean(),
boxsize=bs,
k=kmesh)
k, pkhd = tools.power(hpmeshd / hpmeshd.mean(),
boxsize=bs,
k=kmesh)
k, pkhx = tools.power(hpmeshd / hpmeshd.mean(),
predict / predict.mean(),
boxsize=bs,
k=kmesh)
##
ax[0, i].semilogx(k[1:], pkpred[1:] / pkhd[1:], label=seed)
ax[1, i].semilogx(k[1:], pkhx[1:] / (pkpred[1:] * pkhd[1:])**0.5)
ax[0, i].set_title(key, fontsize=12)
i = 2
predict, hpmeshd = meshes[seed][0]['predictcen']+meshes[seed][0]['predictsat'] ,\
meshes[seed][1]['pnncen']+meshes[seed][1]['pnnsat']
k, pkpred = tools.power(predict / predict.mean(), boxsize=bs, k=kmesh)
k, pkhd = tools.power(hpmeshd / hpmeshd.mean(), boxsize=bs, k=kmesh)
k, pkhx = tools.power(hpmeshd / hpmeshd.mean(),
predict / predict.mean(),
boxsize=bs,
k=kmesh)
##
ax[0, i].semilogx(k[1:], pkpred[1:] / pkhd[1:], label=seed, ls='-')
ax[1, i].semilogx(k[1:],
pkhx[1:] / (pkpred[1:] * pkhd[1:])**0.5,
ls='-')
for axis in ax.flatten():
axis.legend(fontsize=14)
axis.set_yticks(np.arange(0, 1.1, 0.1))
axis.grid(which='both')
axis.set_ylim(0., 1.1)
ax[0, i].set_title('All Gal', fontsize=15)
ax[0, 0].set_ylabel('Transfer function', fontsize=14)
ax[1, 0].set_ylabel('Cross correlation', fontsize=14)
plt.savefig(savepath + '/2pt%d.png' % max_steps)
plt.show()
# ##################################################
fig, ax = plt.subplots(2, 3, figsize=(12, 8))
for i, key in enumerate(['cen', 'sat']):
predict, hpmeshd = meshes[seed][0]['predict%s' %
key], meshes[seed][1]['pnn%s' %
key],
vmin, vmax = 0, (hpmeshd[:, :, :].sum(axis=0)).max()
im = ax[0, i].imshow(predict[:, :, :].sum(axis=0),
vmin=vmin,
vmax=vmax)
im = ax[1, i].imshow(hpmeshd[:, :, :].sum(axis=0),
vmin=vmin,
vmax=vmax)
ax[0, i].set_title(key, fontsize=15)
i = 2
predict, hpmeshd = meshes[seed][0]['predictcen']+meshes[seed][0]['predictsat'] ,\
meshes[seed][1]['pnncen']+meshes[seed][1]['pnnsat']
im = ax[0, i].imshow(predict[:, :, :].sum(axis=0), vmin=vmin, vmax=vmax)
im = ax[1, i].imshow(hpmeshd[:, :, :].sum(axis=0), vmin=vmin, vmax=vmax)
ax[0, i].set_title('All Gal', fontsize=15)
ax[0, 0].set_ylabel('Prediction', fontsize=15)
ax[1, 0].set_ylabel('Truth', fontsize=15)
plt.savefig(savepath + '/imshow%d.png' % max_steps)
plt.show()
def sampletrue(modpath, csize):
print('sampling true')
tf.reset_default_graph()
module = hub.Module(modpath + '/likelihood/')
xx = tf.placeholder(tf.float32,
shape=[None, None, None, None, nchannels],
name='input')
yy = tf.placeholder(tf.float32,
shape=[None, None, None, None, ntargets],
name='labels')
samples = module(dict(features=xx, labels=yy), as_dict=True)['sample']
loglik = module(dict(features=xx, labels=yy),
as_dict=True)['loglikelihood']
index = np.where(cube_sizes == csize)[0][0]
with tf.Session() as sess:
sess.run(tf.initializers.global_variables())
start = time()
#sess.run(tf.initializers.global_variables())
features = cube_features[index][0:1].astype('float32')
targets = cube_target[index][0:1].astype('float32')
xxm = features
yym = targets
print(xxm.shape, yym.shape)
sample = np.zeros_like(yym)
sample2 = sess.run(samples, feed_dict={xx: xxm, yy: yym * 0})
for i in range(yym.shape[1]):
for j in range(yym.shape[2]):
for k in range(yym.shape[3]):
data_dict = {xx: xxm, yy: sample}
next_sample = sess.run(samples, feed_dict=data_dict)
sample[:, i, j, k, :] = next_sample[:, i, j, k, :]
end = time()
print('Taken : ', end - start)
plt.figure(figsize=(12, 4))
vmin, vmax = None, None
plt.subplot(131)
plt.imshow(yym[0, ..., 0].sum(axis=0), vmin=vmin, vmax=vmax)
plt.colorbar()
plt.subplot(132)
plt.imshow(sample[0, ..., 0].sum(axis=0), vmin=vmin, vmax=vmax)
plt.colorbar()
plt.subplot(133)
plt.imshow(sample2[0, ..., 0].sum(axis=0), vmin=vmin, vmax=vmax)
plt.colorbar()
plt.savefig(savepath + '/sampletrue_im%d' % max_steps)
plt.figure()
plt.hist(sample2.flatten(),
range=(-5, 5),
bins=100,
label='predict',
alpha=0.8)
plt.hist(yym[0, ..., 0].flatten(),
range=(-5, 5),
bins=100,
label='target',
alpha=0.5)
plt.hist(sample.flatten(),
range=(-5, 5),
bins=100,
label='predicttrue',
alpha=0.5)
plt.legend()
plt.savefig(savepath + '/truehist%d.png' % max_steps)
plt.show()
##
ii = 0
k, ph = tools.power(yym[ii, ..., ], boxsize=bs / cube_sizes[index])
k, pp1 = tools.power(sample[ii, ..., ], boxsize=bs / cube_sizes[index])
k, pp1x = tools.power(sample[ii, ..., ],
yym[ii, ..., ],
boxsize=bs / cube_sizes[index])
k, pp2 = tools.power(sample2[ii, ..., ], boxsize=bs / cube_sizes[index])
k, pp2x = tools.power(sample2[ii, ..., ],
yym[ii, ..., ],
boxsize=bs / cube_sizes[index])
plt.figure(figsize=(10, 4))
plt.subplot(121)
# plt.plot(k, ph, 'C%d-'%ii)
plt.plot(k, pp1 / ph, 'C%d-' % ii)
plt.plot(k, pp2 / ph, 'C%d--' % ii)
plt.ylim(0, 1.5)
plt.grid(which='both')
plt.semilogx()
# plt.loglog()
plt.subplot(122)
plt.plot(k, pp1x / (pp1 * ph)**0.5, 'C%d-' % ii)
plt.plot(k, pp2x / (pp2 * ph)**0.5, 'C%d--' % ii)
plt.ylim(0, 1)
plt.grid(which='both')
plt.semilogx()
plt.savefig(savepath + '/sampletrue_2pt%d' % max_steps)
except Exception as e:
print(e)
with open(ofolder + 'params.json', 'w') as fp:
json.dump(params, fp)
#######################################
x_test, y_test = testdata[0:1, 0], testdata[0:1, 1:]
x_test = tf.constant(x_test, dtype=tf.float32)
fpos = datamodel.pmpos(x_test)[1].numpy()[0] * bs / nc
bparams, bmodel = getbias(bs, nc, y_test[0, 0], x_test.numpy()[0], fpos)
bias_test = tf.constant([bparams[0], bparams[1]], dtype=tf.float32)
print('Bias test : ', bias_test)
bmodeltf = datamodel.biasfield(x_test, bias_test).numpy()
errormesh = y_test[:, 0] - bmodeltf
kerror, perror = tools.power(errormesh[0], boxsize=bs)
kerror, perror = kerror[1:], perror[1:]
ipkerror = interp1d(kerror,
perror,
bounds_error=False,
fill_value=(perror[0], perror.max()))
errormesh_test = tf.expand_dims(tf.constant(ipkerror(kmesh), dtype=tf.float32),
0)
#
if args.stdinit:
x_init = tf.constant(y_test[:, 1] / b1eul, dtype=tf.float32)
if args.diffps:
x_init = x_init + linear_field(
nc, bs, ipkdiff, batch_size=y_test.shape[0])
elif args.priorinit:
x_init = linear_field(nc, bs, ipklin, batch_size=y_test.shape[0])
def check_module(modpath):
print('\nTest module\n')
tf.reset_default_graph()
module = hub.Module(modpath + '/likelihood/')
xx = tf.placeholder(tf.float32,
shape=[None, None, None, None, nchannels],
name='input')
yy = tf.placeholder(tf.float32,
shape=[None, None, None, None, ntargets],
name='labels')
samples = module(dict(features=xx, labels=yy), as_dict=True)['sample']
loglik = module(dict(features=xx, labels=yy),
as_dict=True)['loglikelihood']
preds = {}
with tf.Session() as sess:
sess.run(tf.initializers.global_variables())
for seed in vseeds:
xxm = np.stack(
[np.pad(vmeshes[seed][0][i], pad, 'wrap') for i in ftname],
axis=-1)
#yym = np.stack([np.pad(vmeshes[seed][1]['pnncen'], pad, 'wrap'), np.pad(vmeshes[seed][1]['pnnsat'], pad, 'wrap')], axis=-1)
yym = np.stack([vmeshes[seed][1][i] for i in tgname], axis=-1)
print('xxm, yym shape = ', xxm.shape, yym.shape)
preds[seed] = sess.run(samples,
feed_dict={
xx: np.expand_dims(xxm, 0),
yy: np.expand_dims(yym, 0)
})
preds[seed] = np.squeeze(preds[seed])
vmeshes[seed][0]['predict'] = preds[seed] #[:, :, :]
##############################
##Power spectrum
shape = [nc, nc, nc]
kk = tools.fftk(shape, bs)
kmesh = sum(i**2 for i in kk)**0.5
yy = ['pos', 'mass']
for iy in range(2):
fig, axar = plt.subplots(2, 2, figsize=(8, 8))
ax = axar[0]
for seed in vseeds:
predict, hpmeshd = vmeshes[seed][0]['predict'][..., iy], np.stack(
[vmeshes[seed][1][i] for i in tgname], axis=-1)[..., iy]
print(predict.shape, hpmeshd.shape)
k, pkpred = tools.power(predict / predict.mean(),
boxsize=bs,
k=kmesh)
k, pkhd = tools.power(hpmeshd / hpmeshd.mean(),
boxsize=bs,
k=kmesh)
k, pkhx = tools.power(hpmeshd / hpmeshd.mean(),
predict / predict.mean(),
boxsize=bs,
k=kmesh)
##
ax[0].semilogx(k[1:], pkpred[1:] / pkhd[1:], label=seed)
ax[1].semilogx(k[1:], pkhx[1:] / (pkpred[1:] * pkhd[1:])**0.5)
for axis in ax.flatten():
axis.legend(fontsize=14)
axis.set_yticks(np.arange(0, 1.2, 0.1))
axis.grid(which='both')
axis.set_ylim(0., 1.1)
ax[0].set_ylabel('Transfer function', fontsize=14)
ax[1].set_ylabel('Cross correlation', fontsize=14)
#
ax = axar[1]
#predict, hpmeshd = vmeshes[seed][0]['predict][...,iy] , np.stack([vmeshes[seed][1][i] for i in tgname], axis=-1)[...,iy]
vmin, vmax = 0, (hpmeshd[:, :, :].sum(axis=0)).max()
im = ax[0].imshow(predict[:, :, :].sum(axis=0), vmin=vmin, vmax=vmax)
im = ax[1].imshow(hpmeshd[:, :, :].sum(axis=0), vmin=vmin, vmax=vmax)
ax[0].set_title('Prediction', fontsize=15)
ax[1].set_title('Truth', fontsize=15)
plt.savefig(savepath + '/vpredict%d-%s.png' % (max_steps, yy[iy]))
plt.show()
plt.figure()
plt.hist(hpmeshd.flatten(),
range=(-1, 20),
bins=100,
label='target',
alpha=0.8)
plt.hist(predict.flatten(),
range=(-1, 20),
bins=100,
label='prediict',
alpha=0.5)
plt.legend()
plt.yscale('log')
plt.savefig(savepath + '/hist%d-%s.png' % (max_steps, yy[iy]))
plt.show()
def check_module(modpath):
print('\nTest module\n')
tf.reset_default_graph()
module = hub.Module(modpath + '/likelihood/')
xx = tf.placeholder(tf.float32,
shape=[None, None, None, None, nchannels],
name='input')
yy = tf.placeholder(tf.float32,
shape=[None, None, None, None, ntargets],
name='labels')
samples = module(dict(features=xx, labels=yy), as_dict=True)['sample']
loglik = module(dict(features=xx, labels=yy),
as_dict=True)['loglikelihood']
preds = {}
with tf.Session() as sess:
sess.run(tf.initializers.global_variables())
for seed in vseeds:
xxm = np.stack(
[np.pad(vmeshes[seed][0][i], pad, 'wrap') for i in ftname],
axis=-1)
#yym = np.stack([np.pad(vmeshes[seed][1]['pnncen'], pad, 'wrap'), np.pad(vmeshes[seed][1]['pnnsat'], pad, 'wrap')], axis=-1)
yym = np.stack([vmeshes[seed][1][i] for i in tgname], axis=-1)
print('xxm, yym shape = ', xxm.shape, yym.shape)
print('xxm :', xxm.mean(), xxm.std())
print('yym :', yym.mean(), yym.std())
preds[seed] = sess.run(samples,
feed_dict={
xx: np.expand_dims(xxm, 0),
yy: 0 * np.expand_dims(yym, 0)
})
vmeshes[seed][0]['predict'] = np.squeeze(preds[seed])
##############################
##Power spectrum
shape = [nc, nc, nc]
kk = tools.fftk(shape, bs)
kmesh = sum(i**2 for i in kk)**0.5
fig, axar = plt.subplots(2, 2, figsize=(8, 8))
ax = axar[0]
for seed in vseeds:
for i, key in enumerate(['']):
predict, hpmeshd = vmeshes[seed][0][
'predict%s' % key], vmeshes[seed][1][tgname[0]],
if predict.mean() < 1e-3: predict += 1
if hpmeshd.mean() < 1e-3: hpmeshd += 1
k, pkpred = tools.power(predict / predict.mean(),
boxsize=bs,
k=kmesh)
k, pkhd = tools.power(hpmeshd / hpmeshd.mean(),
boxsize=bs,
k=kmesh)
k, pkhx = tools.power(hpmeshd / hpmeshd.mean(),
predict / predict.mean(),
boxsize=bs,
k=kmesh)
##
ax[0].semilogx(k[1:], pkpred[1:] / pkhd[1:], label=seed)
ax[1].semilogx(k[1:], pkhx[1:] / (pkpred[1:] * pkhd[1:])**0.5)
ax[0].set_title(key, fontsize=12)
for axis in ax.flatten():
axis.legend(fontsize=14)
axis.set_yticks(np.arange(0, 1.2, 0.1))
axis.grid(which='both')
axis.set_ylim(0., 1.1)
ax[0].set_ylabel('Transfer function', fontsize=14)
ax[1].set_ylabel('Cross correlation', fontsize=14)
#
ax = axar[1]
for i, key in enumerate(['']):
predict, hpmeshd = vmeshes[seed][0]['predict%s' %
key], vmeshes[seed][1][tgname[0]],
vmin, vmax = 0, (hpmeshd[:, :, :].sum(axis=0)).max()
#im = ax[0].imshow(predict[:, :, :].sum(axis=0), vmin=vmin, vmax=vmax)
#im = ax[1].imshow(hpmeshd[:, :, :].sum(axis=0), vmin=vmin, vmax=vmax)
im = ax[0].imshow(predict[:, :, :].sum(axis=0))
plt.colorbar(im, ax=ax[0])
im = ax[1].imshow(hpmeshd[:, :, :].sum(axis=0))
plt.colorbar(im, ax=ax[1])
ax[0].set_title(key, fontsize=15)
ax[0].set_title('Prediction', fontsize=15)
ax[1].set_title('Truth', fontsize=15)
plt.savefig(savepath + '/vpredict%d.png' % max_steps)
plt.show()
plt.figure()
plt.hist(vmeshes[100][0]['predict'].flatten(), range=(-5, 5), bins=100)
plt.hist(vmeshes[100][1][tgname[0]].flatten(),
alpha=0.5,
range=(-5, 5),
bins=100)
plt.savefig(savepath + '/hist%d.png' % max_steps)
plt.show()
dosampletrue = False
if max_steps in [
50, 100, 500, 1000, 5000, 15000, 25000, 35000, 45000, 55000, 65000
]:
dosampletrue = True
csize = 16
if max_steps in [3000, 10000, 20000, 30000, 40000, 50000, 60000, 70000]:
dosampletrue = True
csize = 32
if dosampletrue: sampletrue(modpath, csize)
def main(_):
dtype = tf.float32
startw = time.time()
tf.random.set_random_seed(100)
np.random.seed(100)
# Compute a few things first, using simple tensorflow
a0 = FLAGS.a0
a = FLAGS.af
nsteps = FLAGS.nsteps
bs, nc = FLAGS.box_size, FLAGS.nc
klin = np.loadtxt('../data/Planck15_a1p00.txt').T[0]
plin = np.loadtxt('../data/Planck15_a1p00.txt').T[1]
ipklin = iuspline(klin, plin)
stages = np.linspace(a0, a, nsteps, endpoint=True)
tf.reset_default_graph()
# Run normal flowpm to generate data
ic = np.load('../data/poisson_L%04d_N%03d/ic.npy' % (bs, nc))
fin = np.load('../data/poisson_L%04d_N%03d/final.npy' % (bs, nc))
data = np.load('../data/poisson_L%04d_N%03d/psample_%0.2f.npy' %
(bs, nc, plambda))
k, pic = tools.power(ic[0] + 1, boxsize=bs)
k, pfin = tools.power(fin[0], boxsize=bs)
plt.plot(k, pic)
plt.plot(k, pfin)
plt.loglog()
plt.grid(which='both')
plt.savefig('pklin.png')
plt.close()
print(pic)
print(pfin)
#sys.exit(-1)
################################################################
tf.reset_default_graph()
print('ic constructed')
#noise = np.random.normal(0, 1, nc**3).reshape(fin.shape).astype(np.float32)*1
#data_noised = fin + noise
#data = data_noised
startpos = np.random.normal(0, 1, nc**3).reshape(fin.shape).astype(
np.float32) * 1
startpos = startpos.flatten()
x0 = tf.placeholder(dtype=tf.float32,
shape=data.flatten().shape,
name='initlin')
xlin = tf.placeholder(dtype=tf.float32, shape=data.shape, name='linfield')
Rsm = tf.placeholder(tf.float32, name='smoothing')
def recon_prototype(linearflat):
"""
"""
linear = tf.reshape(linearflat, data.shape)
#
#loss = tf.reduce_sum(tf.square(linear - minimum))
state = lpt_init(linear, a0=0.1, order=1)
final_state = nbody(state, stages, FLAGS.nc)
final_field = cic_paint(tf.zeros_like(linear), final_state[0])
#final_field = pmgraph(linear)
base = final_field
if FLAGS.anneal:
Rsmsq = tf.multiply(Rsm * bs / nc, Rsm * bs / nc)
smwts = tf.exp(tf.multiply(-kmesh**2, Rsmsq))
basek = r2c3d(base, norm=nc**3)
basek = tf.multiply(basek, tf.cast(smwts, tf.complex64))
base = c2r3d(basek, norm=nc**3)
galmean = tfp.distributions.Poisson(rate=plambda * (1 + base))
logprob = -tf.reduce_sum(galmean.log_prob(data))
#logprob = tf.multiply(logprob, 1/nc**3, name='logprob')
#Prior
lineark = r2c3d(linear, norm=nc**3)
priormesh = tf.square(tf.cast(tf.abs(lineark), tf.float32))
prior = tf.reduce_sum(tf.multiply(priormesh, 1 / priorwt))
#prior = tf.multiply(prior, 1/nc**3, name='prior')
#
loss = logprob + prior
grad = tf.gradients(loss, linearflat)
print(grad)
return loss, grad[0]
@tf.function
def min_lbfgs():
return tfp.optimizer.lbfgs_minimize(
#make_val_and_grad_fn(recon_prototype),
recon_prototype,
initial_position=x0,
tolerance=1e-10,
max_iterations=FLAGS.niter)
tfinal_field = pmgraph(xlin)
RRs = [2.0, 1.0, 0.0]
start0 = time.time()
with tf.Session() as sess:
for iR, RR in enumerate(RRs):
start = time.time()
results = sess.run(min_lbfgs(), {Rsm: RR, x0: startpos})
print("\n")
print(results)
print("\n")
startpos = results.position
print(startpos)
print("\nTime taken for %d iterations: " % FLAGS.niter,
time.time() - start)
minic = startpos.reshape(data.shape)
minfin = sess.run(tfinal_field, {xlin: minic})
dg.saveimfig("R%d" % RR, [minic, minfin], [ic, fin], fpath + '')
dg.save2ptfig("R%d" % RR, [minic, minfin], [ic, fin], fpath + '',
bs)
np.save(fpath + 'recon-icR%d' % RR, minic)
np.save(fpath + 'recon-finalR%d' % RR, minfin)
#tf.reset_default_graph()
print("\n")
print('\nminimized\n')
print('\nTotal time taken %d iterations: ' % (len(RRs) * FLAGS.niter),
time.time() - start0)
#tfic = linear_field(FLAGS.nc, FLAGS.box_size, ipklin, batch_size=1, seed=100, dtype=dtype)*0 + minimum.reshape(data_noised.shape)
#state = lpt_init(tfic, a0=0.1, order=1)
#final_state = nbody(state, stages, FLAGS.nc)
#tfinal_field = cic_paint(tf.zeros_like(tfic), final_state[0])
##
exit(0)
def main(_):
dtype = tf.float32
startw = time.time()
tf.random.set_random_seed(100)
np.random.seed(100)
# Compute a few things first, using simple tensorflow
a0 = FLAGS.a0
a = FLAGS.af
nsteps = FLAGS.nsteps
bs, nc = FLAGS.box_size, FLAGS.nc
klin = np.loadtxt('../data/Planck15_a1p00.txt').T[0]
plin = np.loadtxt('../data/Planck15_a1p00.txt').T[1]
ipklin = iuspline(klin, plin)
stages = np.linspace(a0, a, nsteps, endpoint=True)
tf.reset_default_graph()
# Run normal flowpm to generate data
try:
ic, fin = np.load(fpath + 'ic.npy'), np.load(fpath + 'final.npy')
print('Data loaded')
except Exception as e:
print('Exception occured', e)
tfic = linear_field(FLAGS.nc,
FLAGS.box_size,
ipklin,
batch_size=1,
seed=100,
dtype=dtype)
if FLAGS.nbody:
state = lpt_init(tfic, a0=0.1, order=1)
final_state = nbody(state, stages, FLAGS.nc)
else:
final_state = lpt_init(tfic, a0=stages[-1], order=1)
tfinal_field = cic_paint(tf.zeros_like(tfic), final_state[0])
with tf.Session() as sess:
ic, fin = sess.run([tfic, tfinal_field])
np.save(fpath + 'ic', ic)
np.save(fpath + 'final', fin)
k, pic = tools.power(ic[0] + 1, boxsize=bs)
k, pfin = tools.power(fin[0], boxsize=bs)
plt.plot(k, pic)
plt.plot(k, pfin)
plt.loglog()
plt.grid(which='both')
plt.savefig('pklin.png')
plt.close()
print(pic)
print(pfin)
#sys.exit(-1)
################################################################
tf.reset_default_graph()
print('ic constructed')
noise = np.random.normal(0, 1, nc**3).reshape(fin.shape).astype(
np.float32) * 1
data_noised = fin + noise
data = data_noised
startpos = noise.copy().flatten().astype(np.float32)
x0 = tf.placeholder(dtype=tf.float32,
shape=data.flatten().shape,
name='initlin')
Rsm = tf.placeholder(tf.float32, name='smoothing')
def recon_prototype(linearflat):
"""
"""
linear = tf.reshape(linearflat, data.shape)
#
#loss = tf.reduce_sum(tf.square(linear - minimum))
state = lpt_init(linear, a0=0.1, order=1)
final_state = nbody(state, stages, FLAGS.nc)
final_field = cic_paint(tf.zeros_like(linear), final_state[0])
residual = final_field - data.astype(np.float32)
base = residual
Rsmsq = tf.multiply(Rsm * bs / nc, Rsm * bs / nc)
smwts = tf.exp(tf.multiply(-kmesh**2, Rsmsq))
basek = r2c3d(base, norm=nc**3)
basek = tf.multiply(basek, tf.cast(smwts, tf.complex64))
base = c2r3d(basek, norm=nc**3)
#
chisq = tf.multiply(base, base)
chisq = tf.reduce_sum(chisq)
chisq = tf.multiply(chisq, 1 / nc**3, name='chisq')
#Prior
lineark = r2c3d(linear, norm=nc**3)
priormesh = tf.square(tf.cast(tf.abs(lineark), tf.float32))
prior = tf.reduce_sum(tf.multiply(priormesh, 1 / priorwt))
prior = tf.multiply(prior, 1 / nc**3, name='prior')
#
loss = chisq + prior
grad = tf.gradients(loss, linearflat)
print(grad)
return loss, grad[0]
@tf.function
def min_lbfgs():
return tfp.optimizer.lbfgs_minimize(
#make_val_and_grad_fn(recon_prototype),
recon_prototype,
initial_position=x0,
tolerance=1e-10,
max_iterations=100)
with tf.Session() as sess:
start = time.time()
results = sess.run(min_lbfgs(), {Rsm: 2, x0: startpos})
print("\n")
print(results)
print("\n")
minimum = results.position
print(minimum)
print("\nTime taken : ", time.time() - start)
start = time.time()
results = sess.run(min_lbfgs(), {Rsm: 1, x0: minimum})
print("\n")
print(results)
minimum = results.position
print("\n")
print(minimum)
print("\nTime taken : ", time.time() - start)
start = time.time()
results = sess.run(min_lbfgs(), {Rsm: 0, x0: minimum})
print("\n")
print(results)
minimum = results.position
print("\n")
print(minimum)
print("\nTime taken : ", time.time() - start)
tf.reset_default_graph()
print("\n")
print('\nminimized\n')
tfic = linear_field(
FLAGS.nc, FLAGS.box_size, ipklin, batch_size=1, seed=100,
dtype=dtype) * 0 + minimum.reshape(data_noised.shape)
state = lpt_init(tfic, a0=0.1, order=1)
final_state = nbody(state, stages, FLAGS.nc)
tfinal_field = cic_paint(tf.zeros_like(tfic), final_state[0])
with tf.Session() as sess:
minic, minfin = sess.run([tfic, tfinal_field])
dg.saveimfig(0, [minic, minfin], [ic, fin], fpath + '')
dg.save2ptfig(0, [minic, minfin], [ic, fin], fpath + '', bs)
np.save(fpath + 'recon0ic', minic)
np.save(fpath + 'recon-final', minfin)
##
exit(0)
def main():
#bs, nc = 400, 64
#ncf, stepf = nc*4, 40
numd = 1e-3
num = int(numd*bs**3)
seed = 100
path = '//mnt/ceph/users/cmodi/cosmo4d/z00/'
dyn = "%02dstep_B1"%nsteps
dynf = "%02dstep_B1"%nstepsf
hpath = path + '/L%04d_N%04d_%s//'%(bs, ncf, dynf)
path = path + '/L%04d_N%04d_%s//'%(bs, nc, dyn)
ic = tools.readbigfile(path + '/L%04d_N%04d_S%04d_%02dstep/mesh/s/'%(bs, nc, seed, nsteps))
final = tools.readbigfile(path + '/L%04d_N%04d_S%04d_%02dstep/mesh/d/'%(bs, nc, seed, nsteps))
hpos = tools.readbigfile(hpath + '/L%04d_N%04d_S%04d_%02dstep/FOF/PeakPosition/'%(bs, ncf, seed, nstepsf))[:num]
hmassall = tools.readbigfile(hpath + '/L%04d_N%04d_S%04d_%02dstep/FOF/Mass/'%(bs, ncf, seed, nstepsf)).flatten()
print(hmassall.shape, hmassall.shape[0]/bs**3, hmassall.shape[0]/bs**3 /numd)
hmass = hmassall[:num]
print(hmass.shape, hmass.shape[0]/bs**3, hmass.shape[0]/bs**3 /numd)
hmeshpos = tools.paintcic(hpos, bs, nc)
hmeshmass = tools.paintcic(hpos, bs, nc, hmass.flatten()*1e10)
hmeshmass /= hmeshmass.mean()
hmeshmass -= 1
hmeshpos /= hmeshpos.mean()
hmeshpos -= 1
if posdata: data = tf.constant(hmeshpos.reshape(1, nc, nc, nc), dtype=tf.float32)
else: data = tf.constant(hmeshmass.reshape(1, nc, nc, nc), dtype=tf.float32)
base = hmeshpos
#base = (base - base.mean())/base.mean()
pfin = tools.power(final, boxsize=bs)[1]
ph = tools.power(1+base, boxsize=bs)[1]
bias = ((ph[1:5]/pfin[1:5])**0.5).mean()
tfdisplaced, tfrandom = standardrecon(data, tf.expand_dims(tf.constant(hpos, dtype=tf.float32), 0),
tf.constant(bias, dtype=tf.float32), R=tf.constant(8, dtype=tf.float32))
displaced, random = tfdisplaced.numpy()[0], tfrandom.numpy()[0]
displaced /= displaced.mean()
displaced -= 1
random /= random.mean()
random -= 1
recon = np.squeeze(displaced - random)
print(recon.mean())
print(displaced.shape, random.shape)
import matplotlib.pyplot as plt
plt.figure(figsize = (9, 4))
plt.subplot(131)
plt.imshow(ic.sum(axis=0))
plt.subplot(132)
plt.imshow(data.numpy()[0].sum(axis=0))
plt.subplot(133)
plt.imshow(recon.sum(axis=0))
plt.savefig('tmp.png')
plt.close()
print(ic.mean(), recon.mean())
k, p1 = tools.power(ic+1, boxsize=bs)
p2 = tools.power(recon+1, boxsize=bs)[1]
px = tools.power(ic+1, f2=recon+1, boxsize=bs)[1]
plt.plot(k, p2/p1)
plt.plot(k, px/(p1*p2)**0.5, '--')
plt.semilogx()
plt.savefig('tmp2.png')
plt.close()
for R in [4, 8, 16, 24, 32, 64, 128, 200, 256]:
tfdisplaced, tfrandom = standardrecon(data, tf.expand_dims(tf.constant(hpos, dtype=tf.float32), 0),
tf.constant(bias, dtype=tf.float32), R=tf.constant(R, dtype=tf.float32))
displaced, random = tfdisplaced.numpy()[0], tfrandom.numpy()[0]
displaced /= displaced.mean()
displaced -= 1
random /= random.mean()
random -= 1
recon = np.squeeze(displaced - random)
print(ic.mean(), recon.mean())
k, p1 = tools.power(ic+1, boxsize=bs)
p2 = tools.power(recon+1, boxsize=bs)[1]
px = tools.power(ic+1, f2=recon+1, boxsize=bs)[1]
#plt.plot(k, p2/p1)
plt.plot(k, px/(p1*p2)**0.5, '-', label=R)
plt.semilogx()
plt.legend()
plt.semilogx()
plt.grid(which='both')
plt.ylim(-0.2, 1.2)
plt.savefig('stdRcompare.png')
lr=0.5,
x_init=x_init,
useprior=True)
check_2pt(
datamodel,
#[[x_test, y_test], [x_init, minic]],
#[[x_test, y_test], [pred_adam, pred_adam10, minic]], grad_params, ofolder + 'fid_recon')
[[x_test + 1., y_test], [x_init + 1., minic + 1.]],
[[x_test + 1., y_test], [pred_adam + 1., pred_adam10 + 1., minic + 1.]],
grad_params,
ofolder + 'fid_recon')
bmodeltf = datamodel.biasfield(x_test, bias)
error = y_test - bmodeltf
k, ph = tools.power(y_test.numpy()[0], boxsize=bs)
k, pb = tools.power(bmodeltf.numpy()[0], boxsize=bs)
kerror, perr = tools.power(error.numpy()[0] + 1, boxsize=bs)
kny = nc * np.pi / bs
cutoff = 1.5
perr[np.where(kerror > cutoff * kny)] = perr[np.where(
kerror > cutoff * kny)[0][0]]
k, px = tools.power(y_test.numpy()[0], f2=bmodeltf.numpy()[0], boxsize=bs)
fig, ax = plt.subplots(1, 2, figsize=(9, 4))
ax[0].plot(k, ph, label='halo')
ax[0].plot(k, pb, '--', label='bias')
ax[0].plot(k, perr, label='error')
ax[0].loglog()
ax[1].plot(k, px / (ph * pb)**0.5)
ax[1].plot(k, (pb / ph)**0.5, '--', label='tf')
def sampletrue(modpath):
print('sampling true')
tf.reset_default_graph()
module = hub.Module(modpath + '/likelihood/')
xx = tf.placeholder(tf.float32,
shape=[None, None, None, None, nchannels],
name='input')
yy = tf.placeholder(tf.float32,
shape=[None, None, None, None, ntargets],
name='labels')
samples = module(dict(features=xx, labels=yy), as_dict=True)['sample']
loglik = module(dict(features=xx, labels=yy),
as_dict=True)['loglikelihood']
#
j = 0
bs, nc = bsnclist[j]
with tf.Session() as sess:
sess.run(tf.initializers.global_variables())
start = time()
vseeds = np.random.choice(test_features[j].shape[0], 1)
xxm = test_features[j][vseeds]
yym = test_target[j][vseeds]
print('xxm, yym shape = ', xxm.shape, yym.shape)
sample = np.zeros_like(yym)
sample2 = sess.run(samples, feed_dict={xx: xxm, yy: yym * 0})
for i in range(yym.shape[1]):
for j in range(yym.shape[2]):
for k in range(yym.shape[3]):
data_dict = {xx: xxm, yy: sample}
next_sample = sess.run(samples, feed_dict=data_dict)
sample[:, i, j, k, :] = next_sample[:, i, j, k, :]
end = time()
print('Taken : ', end - start)
plt.figure(figsize=(12, 4))
vmin, vmax = None, None
plt.subplot(131)
plt.imshow(yym[0, ..., 0].sum(axis=0), vmin=vmin, vmax=vmax)
plt.colorbar()
plt.title('Data')
plt.subplot(132)
plt.imshow(sample[0, ..., 0].sum(axis=0), vmin=vmin, vmax=vmax)
plt.colorbar()
plt.title('Correct sample')
plt.subplot(133)
plt.imshow(sample2[0, ..., 0].sum(axis=0), vmin=vmin, vmax=vmax)
plt.colorbar()
plt.title('Single pass sample')
plt.savefig(savepath + '/sampletrue_im%d' % max_steps)
##
ii = 0
k, ph = tools.power(yym[ii, ..., ], boxsize=bs)
k, pp1 = tools.power(sample[ii, ..., ], boxsize=bs)
k, pp1x = tools.power(sample[ii, ..., ], yym[ii, ..., ], boxsize=bs)
k, pp2 = tools.power(sample2[ii, ..., ], boxsize=bs)
k, pp2x = tools.power(sample2[ii, ..., ], yym[ii, ..., ], boxsize=bs)
plt.figure(figsize=(10, 4))
plt.subplot(121)
# plt.plot(k, ph, 'C%d-'%ii)
plt.plot(k, pp1 / ph, label='Correct')
plt.plot(k, pp2 / ph, label='Single Pass')
plt.ylim(0, 1.5)
plt.grid(which='both')
plt.semilogx()
plt.legend()
# plt.loglog()
plt.subplot(122)
plt.plot(k, pp1x / (pp1 * ph)**0.5)
plt.plot(k, pp2x / (pp2 * ph)**0.5)
plt.ylim(0, 1)
plt.grid(which='both')
plt.semilogx()
plt.savefig(savepath + '/sampletrue_2pt%d' % max_steps)
def check_module(modpath):
print('\nTest module\n')
tf.reset_default_graph()
module = hub.Module(modpath + '/likelihood/')
xx = tf.placeholder(tf.float32,
shape=[None, None, None, None, nchannels],
name='input')
yy = tf.placeholder(tf.float32,
shape=[None, None, None, None, ntargets],
name='labels')
samples = module(dict(features=xx, labels=yy), as_dict=True)['sample']
loglik = module(dict(features=xx, labels=yy),
as_dict=True)['loglikelihood']
for j in range(nsizes):
bs, nc = bsnclist[j]
with tf.Session() as sess:
sess.run(tf.initializers.global_variables())
vseeds = np.random.choice(test_features[j].shape[0], 10)
xxm = test_features[j][vseeds]
yym = test_target[j][vseeds]
print('xxm, yym shape = ', xxm.shape, yym.shape)
preds = sess.run(samples, feed_dict={xx: xxm, yy: yym})
##############################
##Power spectrum
shape = [nc, nc, nc]
kk = tools.fftk(shape, bs)
kmesh = sum(i**2 for i in kk)**0.5
print(kmesh.shape)
print(preds.shape, yym.shape)
fig, axar = plt.subplots(2, 2, figsize=(8, 8))
ax = axar[0]
for iseed, seed in enumerate(vseeds):
predict, hpmeshd = np.squeeze(preds[iseed]), np.squeeze(yym[iseed])
k, pkpred = tools.power(predict / predict.mean(),
boxsize=bs,
k=kmesh)
k, pkhd = tools.power(hpmeshd / hpmeshd.mean(),
boxsize=bs,
k=kmesh)
k, pkhx = tools.power(hpmeshd / hpmeshd.mean(),
predict / predict.mean(),
boxsize=bs,
k=kmesh)
##
ax[0].semilogx(k[1:], pkpred[1:] / pkhd[1:], label=seed)
ax[1].semilogx(k[1:], pkhx[1:] / (pkpred[1:] * pkhd[1:])**0.5)
for axis in ax.flatten():
axis.legend(fontsize=14, ncol=3)
axis.set_yticks(np.arange(0, 1.2, 0.1))
axis.grid(which='both')
axis.set_ylim(0., 1.1)
ax[0].set_ylabel('Transfer function', fontsize=14)
ax[1].set_ylabel('Cross correlation', fontsize=14)
#
ax = axar[1]
vmin, vmax = 1, (hpmeshd[:, :, :].sum(axis=0)).max()
im = ax[0].imshow(predict[:, :, :].sum(axis=0), vmin=vmin, vmax=vmax)
plt.colorbar(im, ax=ax[0])
im = ax[1].imshow(hpmeshd[:, :, :].sum(axis=0), vmin=vmin, vmax=vmax)
plt.colorbar(im, ax=ax[1])
ax[0].set_title('Prediction', fontsize=15)
ax[1].set_title('Truth', fontsize=15)
plt.savefig(savepath + '/vpredict%d-%d.png' % (nc, max_steps))
plt.show()
plt.figure()
plt.hist(yym.flatten(),
range=(-1, 20),
bins=100,
label='target',
alpha=0.8)
plt.hist(preds.flatten(),
range=(-1, 20),
bins=100,
label='prediict',
alpha=0.5)
plt.legend()
plt.savefig(savepath + '/hist%d-%d.png' % (nc, max_steps))
plt.show()
##
dosampletrue = False
if max_steps in [100, 5000, 10000, 15000, 20000, 25000, 30000]:
dosampletrue = True
csize = 32
if dosampletrue: sampletrue(modpath)
def main(_):
infield = True
dtype = tf.float32
mesh_shape = mtf.convert_to_shape(FLAGS.mesh_shape)
nc, bs = FLAGS.nc, FLAGS.box_size
a0, a, nsteps = FLAGS.a0, FLAGS.af, FLAGS.nsteps
stages = np.linspace(a0, a, nsteps, endpoint=True)
numd = 1e-3
##Begin here
klin = np.loadtxt('../data/Planck15_a1p00.txt').T[0]
plin = np.loadtxt('../data/Planck15_a1p00.txt').T[1]
ipklin = iuspline(klin, plin)
#pypath = '/global/cscratch1/sd/chmodi/cosmo4d/output/version2/L0400_N0128_05step-fof/lhd_S0100/n10/opt_s999_iM12-sm3v25off/meshes/'
final = tools.readbigfile('../data//L0400_N0128_S0100_05step/mesh/d/')
ic = tools.readbigfile('../data/L0400_N0128_S0100_05step/mesh/s/')
fpos = tools.readbigfile(
'../data/L0400_N0128_S0100_05step/dynamic/1/Position/')
hpos = tools.readbigfile(
'../data/L0400_N0512_S0100_40step/FOF/PeakPosition//')[1:int(bs**3 *
numd)]
hmass = tools.readbigfile(
'../data/L0400_N0512_S0100_40step/FOF/Mass//')[1:int(bs**3 *
numd)].flatten()
meshpos = tools.paintcic(hpos, bs, nc)
meshmass = tools.paintcic(hpos, bs, nc, hmass.flatten() * 1e10)
data = meshmass
data /= data.mean()
data -= 1
kv = tools.fftk([nc, nc, nc], bs, symmetric=True, dtype=np.float32)
datasm = tools.fingauss(data, kv, 3, np.pi * nc / bs)
ic, data = np.expand_dims(ic, 0), np.expand_dims(data,
0).astype(np.float32)
datasm = np.expand_dims(datasm, 0).astype(np.float32)
print("Min in data : %0.4e" % datasm.min())
np.save(fpath + 'ic', ic)
np.save(fpath + 'data', data)
####################################################
#
tf.reset_default_graph()
tfic = tf.constant(ic.astype(np.float32))
state = lpt_init(tfic, a0=0.1, order=1)
final_state = nbody(state, stages, FLAGS.nc)
tfinal_field = cic_paint(tf.zeros_like(tfic), final_state[0])
with tf.Session() as sess:
state = sess.run(final_state)
fpos = state[0, 0] * bs / nc
bparams, bmodel = getbias(bs, nc, data[0] + 1, ic[0], fpos)
#bmodel += 1 #np.expand_dims(bmodel, 0) + 1
errormesh = data - np.expand_dims(bmodel, 0)
kerror, perror = tools.power(errormesh[0] + 1, boxsize=bs)
kerror, perror = kerror[1:], perror[1:]
print("Error power spectra", kerror, perror)
print("\nkerror", kerror.min(), kerror.max(), "\n")
print("\nperror", perror.min(), perror.max(), "\n")
suff = "-error"
dg.saveimfig(suff, [ic, errormesh], [ic, data], fpath + '/figs/')
dg.save2ptfig(suff, [ic, errormesh], [ic, data], fpath + '/figs/', bs)
ipkerror = iuspline(kerror, perror)
####################################################
#stdinit = srecon.standardinit(bs, nc, meshpos, hpos, final, R=8)
recon_estimator = tf.estimator.Estimator(model_fn=model_fn,
model_dir=fpath)
def predict_input_fn(data=data,
M0=0.,
w=3.,
R0=0.,
off=None,
istd=None,
x0=None):
features = {}
features['datasm'] = data
features['R0'] = R0
features['x0'] = x0
features['bparams'] = bparams
features['ipkerror'] = [kerror, perror] #ipkerror
return features, None
eval_results = recon_estimator.predict(
input_fn=lambda: predict_input_fn(x0=ic), yield_single_examples=False)
for i, pred in enumerate(eval_results):
if i > 0: break
suff = '-model'
dg.saveimfig(suff, [pred['ic'], pred['model']], [ic, data],
fpath + '/figs/')
dg.save2ptfig(suff, [pred['ic'], pred['model']], [ic, data],
fpath + '/figs/', bs)
np.save(fpath + '/reconmeshes/ic_true' + suff, pred['ic'])
np.save(fpath + '/reconmeshes/fin_true' + suff, pred['final'])
np.save(fpath + '/reconmeshes/model_true' + suff, pred['model'])
#
randominit = np.random.normal(size=data.size).reshape(data.shape)
#eval_results = recon_estimator.predict(input_fn=lambda : predict_input_fn(x0 = np.expand_dims(stdinit, 0)), yield_single_examples=False)
eval_results = recon_estimator.predict(
input_fn=lambda: predict_input_fn(x0=randominit),
yield_single_examples=False)
for i, pred in enumerate(eval_results):
if i > 0: break
suff = '-init'
dg.saveimfig(suff, [pred['ic'], pred['model']], [ic, data],
fpath + '/figs/')
dg.save2ptfig(suff, [pred['ic'], pred['model']], [ic, data],
fpath + '/figs/', bs)
np.save(fpath + '/reconmeshes/ic_init' + suff, pred['ic'])
np.save(fpath + '/reconmeshes/fin_init' + suff, pred['final'])
np.save(fpath + '/reconmeshes/model_init' + suff, pred['model'])
#
# Train and evaluate model.
RRs = [4., 2., 1., 0.5, 0.]
niter = 100
iiter = 0
for R0 in RRs:
print('\nFor iteration %d\n' % iiter)
print('With R0=%0.2f \n' % (R0))
def train_input_fn():
features = {}
features['datasm'] = data
features['R0'] = R0
features['bparams'] = bparams
features['ipkerror'] = [kerror, perror] #ipkerror
#features['x0'] = np.expand_dims(stdinit, 0)
features['x0'] = randominit
features['lr'] = 0.01
return features, None
recon_estimator.train(input_fn=train_input_fn, max_steps=iiter + niter)
eval_results = recon_estimator.predict(input_fn=predict_input_fn,
yield_single_examples=False)
for i, pred in enumerate(eval_results):
if i > 0: break
iiter += niter #
suff = '-%d-R%d' % (iiter, R0)
dg.saveimfig(suff, [pred['ic'], pred['model']], [ic, data],
fpath + '/figs/')
dg.save2ptfig(suff, [pred['ic'], pred['model']], [ic, data],
fpath + '/figs/', bs)
np.save(fpath + '/reconmeshes/ic' + suff, pred['ic'])
np.save(fpath + '/reconmeshes/fin' + suff, pred['final'])
np.save(fpath + '/reconmeshes/model' + suff, pred['model'])
sys.exit(0)
##
exit(0)
def getbias(bs, nc, hmesh, basemesh, pos, doed=False, fpos=None, kmax=0.3, fitshear=False):
print('Will fit for bias now')
try: d0, d2, s2 = basemesh
except:
d0 = basemesh.copy()
d0 -= basemesh.mean()
d2 = 1.*d0**2
d2 -= d2.mean()
s2 = shear(d0)
s2 -= 1.*d0**2
s2 -= s2.mean()
k, ph = tools.power(hmesh, boxsize = bs)
ik = numpy.where(k > kmax)[0][0]
ed0 = tools.paintcic(pos, bs, nc, mass=d0.flatten())
ed2 = tools.paintcic(pos, bs, nc, mass=d2.flatten())
es2 = tools.paintcic(pos, bs, nc, mass=s2.flatten())
if abs(ed0.mean()) < 1e-3: ed0 += 1
if abs(ed2.mean()) < 1e-3: ed2 += 1
if abs(es2.mean()) < 1e-3: es2 += 1
ped0 = tools.power(ed0, boxsize=bs)[1]
ped2 = tools.power(ed2, boxsize=bs)[1]
pes2 = tools.power(es2, boxsize=bs)[1]
pxed0d2 = tools.power(ed0, f2=ed2, boxsize=bs)[1]
pxed0s2 = tools.power(ed0, f2=es2, boxsize=bs)[1]
pxed2s2 = tools.power(ed2, f2=es2, boxsize=bs)[1]
pxhed0 = tools.power(hmesh, f2=ed0, boxsize=bs)[1]
pxhed2 = tools.power(hmesh, f2=ed2, boxsize=bs)[1]
pxhes2 = tools.power(hmesh, f2=es2, boxsize=bs)[1]
if doed:
ed = tools.paintcic(pos, bs, nc, mass=np.ones(pos.shape[0]))
ped = tools.power(ed, boxsize=bs)[1]
pxhed = tools.power(hmesh, f2=ed, boxsize=bs)[1]
pxedd0 = tools.power(ed, f2=ed0, boxsize=bs)[1]
pxedd2 = tools.power(ed, f2=ed2, boxsize=bs)[1]
pxeds2 = tools.power(ed, f2=es2, boxsize=bs)[1]
def ftomin(bb, ii=ik, retp = False):
b1, b2, bs = bb
#
if fitshear: pass
else: bs = 0.
#
pred = b1**2 *ped0 + b2**2*ped2 + 2*b1*b2*pxed0d2
pred += bs**2 *pes2 + 2*b1*bs*pxed0s2 + 2*b2*bs*pxed2s2
if doed: pred += ped + 2*b1*pxedd0 + 2*b2*pxedd2 + 2*bs*pxeds2
predx = 1*b1*pxhed0 + 1*b2*pxhed2
predx += 1*bs*pxhes2
if doed: predx += 1*pxhed
if retp : return pred, predx
chisq = (((ph + pred - 2*predx)[1:ii])**2).sum()**0.5.real
return chisq.real
print('Minimize\n')
# b1, b2, bs2 = minimize(ftomin, [1, 1, 1], method='Nelder-Mead', options={'maxfev':10000}).x
params = minimize(ftomin, [1, 0, 0]).x
b1, b2, bs2 = params
print('\nBias fit params are : ', b1, b2, bs2)
ed0 = tools.paintcic(pos, bs, nc, mass=d0.flatten())
ed2 = tools.paintcic(pos, bs, nc, mass=d2.flatten())
es2 = tools.paintcic(pos, bs, nc, mass=s2.flatten())
if fpos is not None:
ed0 = tools.paintcic(fpos, bs, nc, mass=d0.flatten())
ed2 = tools.paintcic(fpos, bs, nc, mass=d2.flatten())
es2 = tools.paintcic(fpos, bs, nc, mass=s2.flatten())
mod = b1*ed0 + b2*ed2 + bs2*es2
else:
mod = b1*ed0 + b2*ed2 + bs2*es2
if doed:
ed = tools.paintcic(pos, bs, nc, mass=np.ones(pos.shape[0]))
mod += ed
return params, mod
def main():
"""
Model function for the CosmicRIM.
"""
if args.parallel: rim = build_rim_parallel(params)
else: rim = build_rim_split(params)
grad_fn = recon_dm_grad
#
#
traindata, testdata = get_data()
idx = np.random.randint(0, traindata.shape[0], 1)
xx, yy = traindata[idx,
0].astype(np.float32), traindata[idx,
1].astype(np.float32),
x_init = np.random.normal(size=xx.size).reshape(xx.shape).astype(
np.float32)
x_pred = rim(x_init, yy, grad_fn)
trainiter = args.trainiter
rim.load_weights(ofolder + '%d' % trainiter)
print('Loaded')
idx = np.random.randint(0, testdata.shape[0], 1)
x_test, y_test = testdata[idx, 0].astype(
np.float32), testdata[idx, 1].astype(np.float32),
x_init = np.random.normal(size=x_test.size).reshape(x_test.shape).astype(
np.float32)
pred = rim(tf.constant(x_init), tf.constant(y_test), grad_fn)
fig, ax = plt.subplots(1, 2, figsize=(9, 4))
k, pkt = tools.power(x_test[0], boxsize=bs)
lss = ["-"] * 7 + ["--"] * 7
print(lss)
for i in range(pred.shape[0]):
print(i, pred[i].shape, x_test.shape)
k, pk = tools.power(pred[i, 0].numpy(), boxsize=bs)
k, px = tools.power(pred[i, 0].numpy(), f2=x_test[0], boxsize=bs)
rcc = px / (pkt * pk)**0.5
print(rcc)
ax[0].plot(k,
rcc,
'C%d' % (i % 7),
alpha=0.7,
ls=lss[(i % 7)],
label=i)
ax[1].plot(k, (pk / pkt)**0.5,
'C%d' % (i % 7),
alpha=0.7,
ls=lss[(i % 7)])
for axis in ax:
axis.semilogx()
axis.legend()
axis.grid(which='both')
ax[0].set_ylim(-0.1, 1.2)
ax[1].set_ylim(-0.2, 2.5)
plt.savefig('./figs/2pt-iters.png')
plt.close()
fig, ax = plt.subplots(2, 5, figsize=(14, 8))
for i in range(10):
ax.flatten()[i].imshow(pred[i + 1, 0].numpy().sum(axis=0))
plt.savefig('./figs/im-iters.png')
plt.close()
lss = ['-', '--', ':', '-.']
pred_adam = adam(tf.constant(x_init), tf.constant(y_test), grad_fn)
pred_adam = [pred_adam[0].numpy(), pm(pred_adam)[0].numpy()]
pred_adam10 = adam10(tf.constant(x_init), tf.constant(y_test), grad_fn)
pred_adam10 = [pred_adam10[0].numpy(), pm(pred_adam10)[0].numpy()]
minic, minfin = fid_recon.reconstruct(tf.constant(y_test),
RRs=[1.0, 0.0],
niter=args.rim_iter * 10,
lr=0.1)
compares = [pred_adam, pred_adam10, [minic[0], minfin[0]]]
print('Test set generated')
check_im(x_test[0], x_init[0], pred.numpy()[0], fname='rim-im')
check_2pt(x_test, y_test, rim, grad_fn, compares, fname='rim-2pt')
x_init = pred.numpy().copy()
pred = rim(tf.constant(pred), tf.constant(y_test), grad_fn)[-1]
check_im(x_test[0], x_init[0], pred.numpy()[0], fname='rim-im-pred')
check_2pt(x_test, y_test, rim, grad_fn, compares, fname='rim-2pt-pred')
x_init = y_test
pred = rim(tf.constant(pred), tf.constant(y_test), grad_fn)[-1]
check_im(x_test[0], x_init[0], pred.numpy()[0], fname='rim-im-data')
check_2pt(x_test, y_test, rim, grad_fn, compares, fname='rim-2pt-data')
x_init = x_test
pred = rim(tf.constant(pred), tf.constant(y_test), grad_fn)[-1]
check_im(x_test[0], x_init[0], pred.numpy()[0], fname='rim-im-truth')
check_2pt(x_test, y_test, rim, grad_fn, compares, fname='rim-2pt-truth')