def main():
# Takes a series of patterns as fasta files
# or strings and a text as fasta file or string and
# returns the match locations by constructing a trie.
text, patterns = parse()
trie = trie_builder.PrefixTrieConstruction(patterns)
match_loc = trie_builder.match_loc(text, trie)
print('Matches at: ', match_loc)
return match_loc
def test_normal(self):
text = "acgta"
patterns = ["cg", "gta"]
trie = trie_builder.PrefixTrieConstruction(patterns)
val = trie_builder.match_loc(text, trie)
self.assertEqual(val, [1, 2])