def __init__(self, master, model, text):
ttk.Labelframe.__init__(self, master=master, text=text)
self.master = master
self.model = model
chromFrame = ttk.Labelframe(self, text="Precursor Chromatogram")
chromFrame.grid(row=0, column=0, sticky="NWES")
chromFrame.rowconfigure(0, weight=1)
chromFrame.columnconfigure(0, weight=1)
chromView = ChromatogramView.ChromatogramView(chromFrame, model)
chromView.grid(row=0, column=0, sticky="NWES")
msFrame = ttk.Labelframe(self, text="Precursorspectrum")
msFrame.grid(row=0, column=1, sticky="NWES")
msFrame.rowconfigure(0, weight=1)
msFrame.columnconfigure(0, weight=1)
msView = PrecursorView.PrecursorView(msFrame, model)
msView.grid(row=0, column=0, sticky="NWES")
msmsFrame = ttk.Labelframe(self, text="MS/MS Spectrum")
msmsFrame.grid(row=1, column=0, columnspan=2, sticky="NWES")
msmsFrame.rowconfigure(0, weight=1)
msmsFrame.columnconfigure(0, weight=1)
msmsView = SpectrumView2.SpectrumView(msmsFrame, model)
msmsView.grid(row=0, column=0, sticky="NWES")
self.rowconfigure(0, weight=1)
self.rowconfigure(1, weight=1)
self.columnconfigure(0, weight=1)
self.columnconfigure(1, weight=1)
def __init__(self, nbparent):
tki.Frame.__init__(self, nbparent)
self._notebook = nbparent
lfopen = ttk.Labelframe(self,
text=' ' + lang[lng.txtSelectExisting] + ' ')
lfopen.grid(row=0, column=0, padx=10, pady=10, sticky=tki.W + tki.E)
b = tki.Button(lfopen,
text=lang[lng.txtOpen] + '...',
command=self._ehOpen)
b.grid(padx=10, pady=10)
lfnew = ttk.Labelframe(self, text=' ' + lang[lng.txtCreateNew] + ' ')
lfnew.grid(row=1, column=0, padx=10, pady=10, sticky=tki.W + tki.E)
cb = ttk.Combobox(lfnew, values=displaytypes, state="readonly")
self._cb = cb
cb.set(displaytypes[0])
cb.grid(row=0, column=0, padx=10, pady=10)
b = tki.Button(lfnew,
text=lang[lng.txtSelectName] + '...',
command=self._ehNew)
b.grid(row=0, column=1, padx=10, pady=10)
def __init__(self, master, model):
Tkinter.Toplevel.__init__(self, master=master)
#self.minsize(600, 300)
self.master = master
self.title("Define Modification")
self.config(bg="#d9d9d9")
self.columnconfigure(0, weight=1)
self.columnconfigure(1, weight=0)
self.rowconfigure(0, weight=0)
self.rowconfigure(1, weight=1)
self.rowconfigure(2, weight=0)
self.elements = ["C", "H", "O", "N", "S", "P", "Na", "K", "Mg"]
elementFrame = ttk.Labelframe(self, text="Elements")
elementFrame.grid(row=0, column=0, columnspan=2, sticky="NWES")
columns = 5
self.content = {}
for i in range(0,len(self.elements)):
row = i/columns
col = i%columns
elementFrame.columnconfigure(col, weight=1)
elementFrame.rowconfigure(row, weight=1)
e = ElementBox(elementFrame, self.elements[i], update = self.updateComposition)
e.grid(row=row, column=col, sticky="NWES")
self.content[self.elements[i]] = e
nameFrame = ttk.Labelframe(self, text="Composition")
nameFrame.grid(row=1, column=0, sticky="NWES")
nameFrame.columnconfigure(0, weight=1)
nameFrame.rowconfigure(0, weight=1)
self.compositionVar = Tkinter.StringVar()
labelCompositon = Tkinter.Label(nameFrame, textvariable = self.compositionVar, anchor="w", justify="left")
labelCompositon.grid(row=0, column=0, sticky="NWES")
massFrame = ttk.Labelframe(self, text="Mass")
massFrame.grid(row=1, column=1, sticky="NWES")
massFrame.columnconfigure(0, weight=1)
massFrame.rowconfigure(0, weight=1)
self.massVar = Tkinter.StringVar()
labelMass = Tkinter.Label(massFrame, textvariable = self.massVar, width=15)
labelMass.grid(row=0, column=0, sticky="NWES")
okFrame = ttk.Frame(self)
okFrame.grid(row=2, column=0, columnspan=2, sticky="NWES")
saveButton = Tkinter.Button(okFrame, text="Add Modification", command=self.addModification)
cancelButton = Tkinter.Button(okFrame, text="Cancel", command=self.cancel)
saveButton.grid(row=0, column=0, sticky="NWES")
cancelButton.grid(row=0, column=1, sticky="NWES")
def _setup_Display_Frame_Widgets(self):
self.Display_Disp_Frame = ttk.Labelframe(self.parent,
text="Display",
relief=tk.GROOVE,
borderwidth=1)
self.Display_Disp_Frame.pack(padx=10,
pady=0,
fill=tk.BOTH,
expand=True)
self.Display_Disp_volts_In_Frame = ttk.Labelframe(
self.Display_Disp_Frame, text="Volts In")
self.Display_Disp_volts_In_Frame.pack(
side=tk.LEFT,
padx=10,
)
self.eb_Display_Volts_In = ttk.Entry(self.Display_Disp_volts_In_Frame,
font=('Arial', 24, 'bold'),
width=8)
self.eb_Display_Volts_In.pack()
self.Display_Disp_volts_Out_Frame = ttk.Labelframe(
self.Display_Disp_Frame, text="Volts Out")
self.Display_Disp_volts_Out_Frame.pack(
side=tk.LEFT,
padx=10,
)
self.eb_Display_Volts_Out = ttk.Entry(
self.Display_Disp_volts_Out_Frame,
font=('Arial', 24, 'bold'),
width=8)
self.eb_Display_Volts_Out.pack()
self.Display_Disp_Current_Frame = ttk.Labelframe(
self.Display_Disp_Frame, text="Current")
self.Display_Disp_Current_Frame.pack(
side=tk.LEFT,
padx=10,
)
self.eb_Display_Current = ttk.Entry(self.Display_Disp_Current_Frame,
font=('Arial', 24, 'bold'),
width=8)
self.eb_Display_Current.pack()
self.Output_Enable_IntVar = tk.IntVar()
self.rb_Output_On = ttk.Radiobutton(self.Display_Disp_Frame,
text="Enable Output",
variable=self.Output_Enable_IntVar,
value=1)
self.rb_Output_On.pack(side=tk.LEFT, padx=10)
self.rb_Output_On.state(["disabled"])
def __init__(self, master=None, xscroll=False, yscroll=False,
label="", style="", **kw):
Tkinter.Canvas.__init__(self, master, **kw)
scrollbars = {
"v": AutoScrollbar(master, grid_row=0, grid_column=1, sticky="ns"),
"h": AutoScrollbar(master, grid_row=1, grid_column=0, sticky="ew"),
}
scrollbars["h"].config(orient=Tkinter.HORIZONTAL)
print "(x,y) scroll:", xscroll, yscroll
if(xscroll):
self.config(xscrollcommand=scrollbars["h"].set)
scrollbars["h"].config(command=self.xview)
if(yscroll):
self.config(yscrollcommand=scrollbars["v"].set)
scrollbars["v"].config(command=self.yview)
# make the canvas expandable
master.grid_rowconfigure(0, weight=1)
master.grid_columnconfigure(0, weight=1)
# Create a frame for the contents
if(label):
self.frame = ttk.Labelframe(self, text=label, style=style)
else:
self.frame = ttk.Frame(self, style=style)
self.frame.rowconfigure(0, weight=1)
self.frame.columnconfigure(0, weight=1)
# Anchor the frame to the NW corner of the canvas
self.create_window(0, 0, anchor="nw", window=self.frame)
def _setup_search_types_frame(self):
frame = ttk.Labelframe(self.inner_frame, text="Search Types")
frame["padding"] = (5,5)
labs = [ ttk.Label(frame, text="List of Lore Structure Names:") ]
labs.append( ttk.Label(frame, text="Lore Structures Subset:") )
self.vars["probe_pdblist"] = Tkinter.StringVar()
self.vars["searchabletablename"] = Tkinter.StringVar()
entries = [ ttk.Entry(frame, textvariable=self.vars["probe_pdblist"]) ]
entries[0].configure(width=30)
entries.append(
ttk.Combobox(frame, textvariable=self.vars["searchabletablename"]) )
#tmp = [ row["name"] for row in self.searchable ]
entries[1]["values"] = [ row["name"] for row in self.searchable ]
self.vars["searchabletablename"].set("All")
print entries[1].configure()
#print tmp
for i in range(2):
labs[i].grid(row=i, column=0, padx=2, pady=2, sticky="w")
entries[i].grid(row=i, column=1, padx=2, pady=2, sticky="w")
return frame
def __init__(self, parent, filename, *args, **kwargs):
tk.Toplevel.__init__(self, parent, *args, **kwargs)
if not CUPSAVAILABLE:
tkMessageBox.showerror('CUPS Not Available!', 'CUPS is necessary to print. Please install!',
parent=self)
self.destroy()
return
self.parent = parent
self.filename = filename
self.grab_set()
self.wm_title("Print Code...")
self.conn = cups.Connection()
printerDictRef = self.conn.getPrinters()
self.printerListFrame = ttk.Labelframe(self, text="Printers")
self.printerList = extrawidgets.ScrollListbox(self.printerListFrame)
for key in printerDictRef.keys():
self.printerList.Listbox.insert(tk.END, key)
self.printerList.pack(expand=1, fill=tk.BOTH)
self.printerListFrame.grid(row=0, column=0, columnspan=2, sticky="NSEW")
self.grid_columnconfigure(0, weight=1)
self.grid_rowconfigure(0, weight=1)
self.printButton = tk.Button(self, text="Print", command=self.sendToPrinter,
width=self.BUTTONWIDTH)
self.printButton.grid(row=1, column=0)
self.cancelButton = tk.Button(self, text="Cancel", command=self.destroy,
width=self.BUTTONWIDTH)
self.cancelButton.grid(row=1, column=1)
self.getPrinterSelected()
def __init__(self, parent):
ttk.Frame.__init__(self, parent)
self.parent = parent
self['padding'] = '4'
self.TKvariables = {}
#Read in the defaults
for key in defaults:
if key[0:5] == 'graph' or key.find('ylims') >= 0:
self.TKvariables.update({key:[]})
for val in range(len(defaults[key])):
self.TKvariables[key].append(tk.StringVar(value=defaults[key][val]))
else:
self.TKvariables.update({key:tk.StringVar(value=defaults[key])})
num_vars = int(self.TKvariables['datalength'].get())
self.datalist = list(range(1,num_vars+1))
#Create a combobox containing the available COM ports
comlst = self.get_comlst()
self.COMbox = ttk.Labelframe(self, text='COM port to source data from')
self.COMcombo = ttk.Combobox(self.COMbox, width=60, values=comlst, \
state='readonly', textvariable=self.TKvariables['COMport'],\
postcommand=self.updateCOMbox )
self.COMbox.grid(row = 0, column = 0, columnspan = 5)
self.COMcombo.grid()
#Create an "about" text box
ABOUTframe = ttk.LabelFrame(self, text = 'What it does')
ABOUTlabel = ttk.Label(ABOUTframe, text= \
'Graphs data coming in over the serial port in a comma '
'seperated variable string. Hover over each option to get '
'a description of what the setting does', wraplength = 140)
ABOUTframe.grid(row=1, column = 0, rowspan = 2, columnspan = 2, \
sticky = 'nw, se', padx= 3, pady = 5)
CreateToolTip(ABOUTlabel,\
"The default values can be changed by opening defaults.py with a text "
"editor and changing the values")
ABOUTlabel.pack()
#Create a Graph! and About buttons
GObut = ttk.Button(self, text='Go!', command=self.goButton)
GObut.grid(row=6, column = 0, sticky = 'we')
ABOUTbut = ttk.Button(self, text='About', command=self.aboutButton)
ABOUTbut.grid(row = 6, column = 1, sticky = 'we')
#Create an instance of the class for the config panel
notebook = ConfigNotebook(self, self)
#Update the state of the graphs based on the defaults and grid
notebook.updateGraphs()
notebook.grid(row=1, column=3, columnspan=2, rowspan=6, sticky = 'nsew', \
padx = 5, pady = 5)
#Bind the enter key to start the program
self.parent.bind("<Return>", lambda event:self.goButton())
def _setup_Current_Frame_Widgets(self):
self.Current_Disp_Frame = ttk.Labelframe(self.parent,
text="Current",
relief=tk.GROOVE,
borderwidth=1)
self.Current_Disp_Frame.pack(padx=10,
pady=0,
fill=tk.BOTH,
expand=True)
self.eb_Current = ttk.Entry(self.Current_Disp_Frame,
font=('Arial', 24, 'bold'),
width=5)
self.eb_Current.pack(padx=10, pady=5, side=tk.LEFT)
self.sc_Current = tk.Scale(self.Current_Disp_Frame,
from_=0,
to=24,
tickinterval=2,
orient=tk.HORIZONTAL)
self.sc_Current.pack(padx=10,
pady=5,
side=tk.LEFT,
fill=tk.X,
expand=True)
self.bt_Set_Current = ttk.Button(self.Current_Disp_Frame,
text="Set Current",
command=self.On_bt_Set_Current_Click)
self.bt_Set_Current.pack(padx=10, pady=10, side=tk.LEFT)
def _setup_Volts_Frame_Widgets(self):
self.Volts_Disp_Frame = ttk.Labelframe(self.parent,
text="Volts",
relief=tk.GROOVE,
borderwidth=1)
self.Volts_Disp_Frame.pack(padx=10, pady=0, fill=tk.BOTH, expand=True)
self.eb_Volts = ttk.Entry(self.Volts_Disp_Frame,
font=('Arial', 24, 'bold'),
width=5)
self.eb_Volts.pack(padx=10, pady=5, side=tk.LEFT)
self.sc_Volts = tk.Scale(self.Volts_Disp_Frame,
from_=0.0,
to=24.0,
resolution=0.01,
tickinterval=24 / 5,
orient=tk.HORIZONTAL)
self.sc_Volts.pack(padx=10,
pady=5,
side=tk.LEFT,
fill=tk.X,
expand=True)
self.bt_Set_Volts = ttk.Button(self.Volts_Disp_Frame,
text="Set Volts",
command=self.On_bt_Set_Volts_Click)
self.bt_Set_Volts.pack(padx=10, pady=10, side=tk.LEFT)
def _setup_Ctrl_Frame_Widgets(self):
self.Ctrl_Frame = ttk.Labelframe(self.parent,
text="Ctrl",
relief=tk.GROOVE,
borderwidth=1)
self.Ctrl_Frame.pack(padx=10, pady=(0, 10), fill=tk.BOTH, expand=True)
self.bt_On = ttk.Button(self.Ctrl_Frame,
text="ON",
command=self.On_bt_On_Click)
self.bt_On.pack(padx=10, pady=10, side=tk.RIGHT)
self.Output_Enable_IntVar.set(1)
self.bt_Off = ttk.Button(self.Ctrl_Frame,
text="OFF",
command=self.On_bt_Off_Click)
self.bt_Off.pack(padx=10, pady=10, side=tk.RIGHT)
self.Output_Enable_IntVar.set(0)
self.bt_Query = ttk.Button(self.Ctrl_Frame,
text="Query",
command=self.On_bt_Query_Click)
self.bt_Query.pack(padx=10, pady=10, side=tk.RIGHT)
self.bt_Ping = ttk.Button(self.Ctrl_Frame,
text="Ping",
command=self.On_bt_Ping_Click)
self.bt_Ping.pack(padx=10, pady=10, side=tk.RIGHT)
self.lb_Status_String_Var = tk.StringVar()
self.lb_Status = ttk.Label(self.Ctrl_Frame,
textvariable=self.lb_Status_String_Var)
self.lb_Status.pack(padx=20, pady=10, side=tk.LEFT)
def addLabelFrame(self, text):
frame = ttk.Labelframe(self, text=text)
frame.grid(row=self.i, column=0, columnspan=3, sticky="NSEW")
self.i += 1
frame.row = 0
self.frames[text] = frame
return frame
def __init__(self,name,th,test=False):
Tkinter.Toplevel.__init__(self)
self.grab_set()
self.focus_set()
self.resizable(0,0)
icon(self)
self.t =th
self.test=test
self.title("Making report ...")
self.font_normal=tkFont.Font(family='sans-serif',size=9)
self.font_active=tkFont.Font(family='sans-serif',size=9,weight="bold")
lf = ttk.Labelframe(self, text=name)
lf.pack(padx=5,pady=5)
self.s1 = Tkinter.Label(lf, text="Parsing mission file")
self.s1.pack(padx=4,pady=4, anchor=Tkinter.W)
self.s2 = Tkinter.Label(lf, text="Exporting Tree Object and counting")
self.s2.pack(padx=4,pady=4, anchor=Tkinter.W)
self.s3 = Tkinter.Label(lf, text="Writing report")
self.s3.pack(padx=4,pady=4, anchor=Tkinter.W)
self.t.start()
if self.test:
self.after(2000,self.refresh)
else:
self.after(200,self.refresh)
self.protocol('WM_DELETE_WINDOW', self.close_checker)
def create_input_widget(self, target_content_area):
self.options_container = ttk.Labelframe(target_content_area)
self.options_container.pack(side=tk.BOTTOM, fill=tk.X, padx=10)
for index, option_name in enumerate(self.item_names):
frame = ttk.Frame(self.options_container)
frame.pack(fill=tk.X)
radiobutton = ttk.Radiobutton(frame,
text=option_name,
variable=self.ttk_radio_button_value,
command=self.on_clicked,
value=self.item_values[index])
radiobutton.bind("<ButtonRelease-3>",
lambda event: self.set_default_value(
)) # bind right-click -> default value
radiobutton.pack(side=LEFT)
try:
if self.item_descriptions[index]:
lbl_checkbox_desc = tk.Label(frame,
text="(%s)" %
self.item_descriptions[index],
font="-slant italic -size 9")
lbl_checkbox_desc.pack(side=LEFT)
except:
pass
def initUI(self):
'''
Crea y empaqueta los windgets de la ventana, tambien se establecen las propiedades
de la ventana
'''
self.geometry('350x100+300+100')
self.protocol("WM_DELETE_WINDOW", "onexit")
self.resizable(0, 0)
frmClases = ttk.Labelframe(self, text="Cracion de una clase")
ttk.Label(frmClases, text='Nombre de la nueva clase: ').grid(row=0,
column=0,
pady=10)
self.strVarNomNvaClase = tk.StringVar()
ttk.Entry(frmClases,
textvariable=self.strVarNomNvaClase).grid(row=0,
column=1,
pady=10)
frmSur = ttk.Frame(frmClases)
ttk.Button(frmSur, text='Crear Clase',
command=self.comandoCrearClase).pack(side=tk.LEFT, padx=5)
ttk.Button(frmSur, text='Cancelar',
command=self.hide).pack(side=tk.LEFT, padx=5)
frmSur.grid(row=1, column=0, columnspan=2, pady=10)
frmClases.pack(fill=tk.BOTH)
def __init__(self, parent, controller, config, dbvar=None):
self.widget_name = "analysispage"
super().__init__(parent, controller, config, dbvar)
self.engine = AnalysisPageEngine()
self.graph_table_notebook = ttk.Notebook(self)
self.graph_table_notebook.grid(row=0,
rowspan=1,
column=0,
sticky="news")
self.graph_frame = graphframe.GraphFrame(self.graph_table_notebook,
self, config)
self.datatable = datatable.DataTable(self.graph_table_notebook, self,
config)
self.graph_table_notebook.add(self.graph_frame, text="Graph")
self.graph_table_notebook.add(self.datatable, text="Table")
self.query_panel = querypanel.QueryPanel(self, self, config)
self.query_panel.grid(row=0, column=1, sticky="nw", rowspan=2)
self.menu_pane = ttk.Labelframe(self, text="Controls")
self.menu_pane.grid(row=1, column=0, sticky="NW")
self.b_menu_pane()
self.columnconfigure(0, weight=0)
self.columnconfigure(1, weight=1)
self.config_chain.append(self.query_panel)
def create_input_widget(self, target_content_area):
self.options_container = ttk.Labelframe(target_content_area)
self.options_container.pack(side=tk.BOTTOM, fill=tk.X, padx=10)
value_list = self.prev_valid_value.split(',')
for index, option_name in enumerate(self.item_names):
ttk_checkbox_value = StringVar()
for value in value_list:
if value == option_name:
ttk_checkbox_value.set(option_name)
break
frame = ttk.Frame(self.options_container)
frame.pack(fill=tk.X)
checkbox = ttk.Checkbutton(frame, variable=ttk_checkbox_value, onvalue=self.item_values[index], offvalue="")
checkbox.config(command=self.on_clicked)
checkbox.bind("<ButtonRelease-3>", lambda event: self.set_default_value()) # bind right-click -> default value
checkbox.pack(side=LEFT)
lbl_checkbox = tk.Label(frame, text=option_name, font = "-weight bold -size 10")
lbl_checkbox.pack(side=LEFT)
if self.item_descriptions[index]:
lbl_checkbox_desc = tk.Label(frame, text="(%s)" % self.item_descriptions[index], font = "-slant italic -size 9")
lbl_checkbox_desc.pack(side=LEFT)
self.checkbox_value_list[option_name] = ttk_checkbox_value
def varcaller(self):
self.vc = ttk.Labelframe(self.inwin, text='Variant Caller')
self.vc.place(x=self.x0, y=self.y0 + 215, height=150, width=600)
vlabel = ["Aligner"]
valv = ["bwa mem"]
aligner, self.vstr, vref = [0] * 2, [0] * 2, [0] * 2
xvl, xrl = 5, 70
for i in range(len(valv)):
aligner[i] = Label(self.vc, text=vlabel[i])
aligner[i].place(x=xvl, y=10)
self.vstr[i] = StringVar(self.vc)
self.vstr[i].set(valv[i]) # default value
vref[i] = OptionMenu(self.vc, self.vstr[i], valv[i])
vref[i].place(x=xrl, y=5)
xvl += 190
xrl += 195
self.sam = Label(self.vc, text="Samtools")
self.sam.place(x=5, y=70)
self.sam_entry = Text(self.vc)
self.sam_entry.place(x=70, y=55, height=50, width=450)
self.sam_entry.insert(
END,
'samtools mpileup -uBg --max-depth 100000 --min-MQ minMappingQuality --min-BQ minBaseQuality -f RefGenome $1.sorted.bam|bcftools call --ploidy 1 --skip-variants indels --multiallelic-caller > $1_caller.vcf'
)
self.sam_entry.configure(state='disabled', wrap='word')
def __init__(self, master, model, text):
ttk.Labelframe.__init__(self, master=master, text=text)
self.master = master
self.model = model
twoDFrame = ttk.Labelframe(self, text="Feature Map")
twoDFrame.grid(row=0, column=0, sticky="NWES")
twoDFrame.columnconfigure(0, weight=1)
twoDFrame.rowconfigure(0, weight=1)
twoDView = TwoDView.TwoDView(twoDFrame, model)
twoDView.grid(row=0, column=0, sticky="NWES")
self.notebook = ttk.Notebook(self)
self.notebook.grid(row=1, column=0, sticky="NWES")
self.n1 = Notebook1(self.notebook, self.model)
self.n2 = Notebook2(self.notebook, self.model)
self.n3 = Notebook3(self.notebook, self.model)
self.notebook.add(self.n1, text='Feature')
self.notebook.add(self.n2, text='Fragment Spectrum')
self.notebook.add(self.n3, text='Consensus Spectrum')
self.columnconfigure(0, weight=1)
self.rowconfigure(0, weight=1)
self.rowconfigure(1, weight=1)
def __init__(self, top=None):
'''This class configures and populates the toplevel window.
top is the toplevel containing window.'''
_bgcolor = '#d9d9d9' # X11 color: 'gray85'
_fgcolor = '#000000' # X11 color: 'black'
_compcolor = '#d9d9d9' # X11 color: 'gray85'
_ana1color = '#d9d9d9' # X11 color: 'gray85'
_ana2color = '#ececec' # Closest X11 color: 'gray92'
self.style = ttk.Style()
if sys.platform == "win32":
self.style.theme_use('winnative')
self.style.configure('.', background=_bgcolor)
self.style.configure('.', foreground=_fgcolor)
self.style.configure('.', font="TkDefaultFont")
self.style.map('.',
background=[('selected', _compcolor),
('active', _ana2color)])
top.geometry("600x450+547+130")
top.title("New Toplevel")
top.configure(borderwidth="3")
top.configure(background="#d9d9d9")
top.configure(highlightbackground="#9e9e9e")
self.NF = ttk.Labelframe(top)
self.NF.place(relx=0.05, rely=0.067, relheight=0.818, relwidth=0.613)
self.NF.configure(relief='raised')
self.NF.configure(text='''NumberField''')
self.NF.configure(borderwidth="1")
self.NF.configure(relief='raised')
self.NF.configure(width=180)
self.NF.configure(cursor="arrow")
def multi(self):
multi = ttk.Labelframe(self.inwin, text='Multiprocess')
multi.place(x=self.x0 + 200, y=self.y0 + 40, height=125, width=200)
self.Threadlabel = Label(multi, text="Num. of Threads ")
self.Threadlabel.place(x=15, y=40)
self.T_entry = Entry(multi)
self.T_entry.place(x=135, y=40, height=25, width=50)
self.T_entry.insert(END, '8')
def buttonbox(self):
'''
Initializes most of the GUI components. Called by the constructor.
'''
self.title("Collimator")
self.box = Frame(self)
self.box.grid(column=0,row=0)
self.plateHeight = 0.0
self.collimatorBlank = 0.0
self.collimatorBlankShape = "Circle"
shapeSelectFrame=ttk.Labelframe(self.box,text="Select apperature shape")
shapeSelectFrame.grid(row=0,column=0,padx=5,pady=5,columnspan=3)
self.shape = StringVar()
self.shape.set(HeightSelector.CIRCLE)
circle = ttk.Radiobutton(shapeSelectFrame, text='Circle', variable=self.shape, value=HeightSelector.CIRCLE,command=self.selection)
square = ttk.Radiobutton(shapeSelectFrame, text='Square', variable=self.shape, value=HeightSelector.SQUARE,command=self.selection)
rectangle = ttk.Radiobutton(shapeSelectFrame, text='Rectangle', variable=self.shape, value=HeightSelector.RECTANGLE,command=self.selection)
circle.grid(row=0,column=0)
square.grid(row=0,column=1)
rectangle.grid(row=0,column=2)
self.dimensionLabel=ttk.Label(self.box,text="Diameter: ")
self.dimensionLabel.grid(row=1,column=0)
self.dimensionVariable=StringVar()
self.dimensionEntry=Entry(self.box,textvariable=self.dimensionVariable)
self.dimensionEntry.config(highlightcolor="GOLD", bd=2, highlightthickness=1, relief=GROOVE)
self.dimensionEntry.grid(column=1,row=1)
dimensionUnits=ttk.Label(self.box,text="mm")
dimensionUnits.grid(row=1,column=2)
self.circleImg=PhotoImage(file="circle.gif")
self.rectangleImg=PhotoImage(file="rectangle.gif")
self.squareImg=PhotoImage(file="square.gif")
self.imageLabel=ttk.Label(self.box,image=self.circleImg)
self.imageLabel.grid(row=2,column=0,columnspan=3,pady=5)
buttonFrame=ttk.Frame(self.box)
buttonFrame.grid(column=0,row=3,columnspan=3)
w = ttk.Button(buttonFrame, text="OK", width=10,
command=self.ok, default=ACTIVE)
w.grid(column=0,row=0, padx=5, pady=5,sticky=(E))
w = ttk.Button(buttonFrame, text="cancel", width=10,
command=self.cancel)
w.grid(column=1,row=0, padx=5, pady=5,sticky=(W))
self.bind("<Return>", self.ok)
self.bind("<Escape>", self.cancel)
self.height = 564.5
self.bottomLimit = 423.0
self.topLimit = 203.7
self.topRatio = self.height/self.topLimit
self.bottomRatio = self.height/self.bottomLimit
self.squareSizes = [24.0,14.0,9.0,5.0,3.0] #size of the square blanks in descending size
self.circleSizes = [8.0,4.0,2.0,1.6,1.0,0.5] #size of the circle blanks in descending size
self.rectangleSizes = [6.0,3.0] #side of the rectangle blanks in descending size
self.message = ""
def __init__(self, master, model, tagparents,updateTagsView):
Tkinter.Toplevel.__init__(self, master=master)
self.master = master
self.title("Edit Tags")
self.config(bg="#d9d9d9")
self.model = model
self.updateTagsView = updateTagsView
self.tagContainer = {}
for tagparent in tagparents:
self.tagContainer[tagparent] = set(tagparent.tags)
self.allTags = set(self.model.currentAnalysis.analysis.all_tags)
self.tagVars = {}
self.editedTags = set()
w = 600
h = 300
#self.minsize(w,h)
self.maxCol = 5
# collect tags
self.tagCopy = {}
frameAddTag = ttk.Labelframe(self, text="Add Tag")
self.frameTags = ttk.Labelframe(self, text="Tags")
frameButtons = Tkinter.Frame(self)
frameAddTag.grid(row=0, column=0, sticky="NSEW")
self.frameTags.grid(row=1, column=0, sticky="NSEW")
frameButtons.grid(row=2, column=0, sticky="NSEW")
self.entryContent = Tkinter.StringVar()
entry = Tkinter.Entry(frameAddTag,textvariable=self.entryContent)
entry.config(bg="white")
buttonEntry = Tkinter.Button(frameAddTag, text="Add", command=self.addTag)
entry.grid(row=0, column=0, sticky="NSEW")
buttonEntry.grid(row=0, column=1)
buttonCancel = Tkinter.Button(frameButtons, text="Cancel",command=self.pressedCancel)
buttonOK = Tkinter.Button(frameButtons, text="OK",command=self.pressedOK)
buttonCancel.grid(row=0, column=0)
buttonOK.grid(row=0, column=1)
self.paintTags()
def __init__(self, mainWindow):
self.colorList = []
self.mainWindow = mainWindow
menu = Menu(mainWindow)
fileList = Menu(menu)
dropDownList = menu.add_command(label="Open file dialog",
command=self.openFileDialog)
mainWin.config(menu=menu)
self.graphFrame = Frame(mainWindow)
self.graphFrame.pack(expand=0)
self.TreeSelector = WidgetTreeViewTk.WidgetTreeViewTk(self)
self.mainNote = ttk.Notebook(self.graphFrame, style="BW.TLabel")
self.mainNote.pack(fill=BOTH, expand=1)
# Create the several graph
self.frame1 = ttk.Labelframe(self.mainNote,
text='Power',
width=100,
height=100)
self.frame2 = ttk.Labelframe(self.mainNote,
text='Advanced Plot',
width=100,
height=100)
self.mainNote.add(self.frame1, text="power")
self.mainNote.add(self.frame2, text="Advanced Plot")
self.frame2 = ttk.Frame(self.mainNote)
self.mainNote.insert("end", self.frame2)
self.graph = PlotGraph.PlotGraph(self.frame1)
self.toggleFrame = Frame(self.graphFrame, width=25, height=10)
self.toggleFrame.grid_propagate(0)
self.toggleFrame.pack(fill=X, expand=1)
self.graph.handleResize()
def __init__(self, master, model):
ttk.Frame.__init__(self, master=master)
self.master = master
self.model = model
self.columnconfigure(0, weight=1)
self.rowconfigure(0, weight=1)
msmsFrame = ttk.Labelframe(self, text="MS/MS Spectrum")
msmsFrame.grid(row=0, column=0, sticky="NWES")
msmsFrame.columnconfigure(0, weight=1)
msmsFrame.rowconfigure(0, weight=1)
msmsView = FeatureSpectrumView.FeatureSpectrumView(msmsFrame, model)
msmsView.grid(row=0, column=0, sticky="NWES")
def __init__(self, master, model):
ttk.Frame.__init__(self, master=master)
self.master = master
self.model = model
self.columnconfigure(0, weight=1)
self.rowconfigure(0, weight=1)
consFrame = ttk.Labelframe(self, text="Consensusspectrum")
consFrame.grid(row=0, column=0, sticky="NWES")
consFrame.columnconfigure(0, weight=1)
consFrame.rowconfigure(0, weight=1)
consView = ConsensusSpectrumFrame2.ConsensusSpectrumFrame(consFrame, model)
consView.grid(row=0, column=0, sticky="NWES")
def __init__(self, master, model):
ttk.Frame.__init__(self, master=master)
self.master = master
self.model = model
self.columnconfigure(0, weight=1)
self.columnconfigure(1, weight=1)
self.rowconfigure(0, weight=1)
chromFrame = ttk.Labelframe(self, text="Precursor Chromatogram")
chromFrame.grid(row=0, column=0, sticky="NWES")
chromView = FeatureChromatogramView.FeatureChromatogramView(chromFrame, model)
chromView.grid(row=0, column=0, sticky="NWES")
chromFrame.columnconfigure(0, weight=1)
chromFrame.rowconfigure(0, weight=1)
msFrame = ttk.Labelframe(self, text="Precursorspectrum")
msFrame.grid(row=0, column=1, sticky="NWES")
msView = FeaturePrecursorView.PrecursorView(msFrame, model)
msView.grid(row=0, column=0, sticky="NWES")
msFrame.columnconfigure(0, weight=1)
msFrame.rowconfigure(0, weight=1)
def add_option_widget(self, option_name, group_box_name=None):
if not group_box_name:
group_box_name = self.get_group_box_name(option_name)
group_box = self.group_boxes.get(group_box_name, None)
if not group_box:
group_box = ttk.Frame(self.content_area)
group_box = ttk.Labelframe(self.content_area, text=group_box_name)
group_box.pack(anchor=tk.W, fill=tk.BOTH)
self.group_boxes[group_box_name] = group_box
self.create_option_widget(option_name, group_box)
def __init__(self, master, model, text):
ttk.Labelframe.__init__(self, master=master, text=text)
self.master = master
self.model = model
panedWindow = Tkinter.PanedWindow(self, orient="vertical")
panedWindow.pack(fill="both", expand=1)
panedWindow.config(sashwidth=10)
panedWindow.config(opaqueresize=False)
panedWindow.config(sashrelief="raised")
panedWindow.columnconfigure(0, weight=1)
panedWindow.rowconfigure(0, weight=1)
panedWindow.rowconfigure(1, weight=0)
panedWindow.rowconfigure(2, weight=1)
errorFrame = ttk.Labelframe(panedWindow, text="Identification errors")
errorView = IdentificationStatsFrame.IdentificationStatsFrame(
errorFrame, model)
errorView.pack(expand=True, fill="both")
peptideFrame = ttk.Labelframe(panedWindow, text="Peptide")
peptideView = PeptideCoverageFrame.PeptideCoverageFrame(
peptideFrame, model)
peptideView.pack(expand=True, fill="both")
consensusFrame = ttk.Labelframe(panedWindow, text="Consensus-Spectrum")
consensusView = ConsensusSpectrumFrame.ConsensusSpectrumFrame(
consensusFrame, model)
consensusView.pack(expand=True, fill="both")
# add panels to panedWindow
panedWindow.add(errorFrame)
panedWindow.add(peptideFrame)
panedWindow.add(consensusFrame)
panedWindow.paneconfigure(errorFrame, stretch="last")
panedWindow.paneconfigure(peptideFrame, stretch="middle")
panedWindow.paneconfigure(consensusFrame, stretch="first")
def _setup_match_params(self, frame_label, labels, var_names, desc,
padding=(5,5)):
frame = ttk.Labelframe(self.inner_frame, text=frame_label)
frame["padding"] = padding
for i in range(len(labels)):
my_row = self.Labelentry(
frame, varname=var_names[i], label=labels[i], width=30)
my_row += (ttk.Label(frame, text=desc[i]),)
for j,el in enumerate(my_row):
el.grid(row=i, column=j, padx=2, pady=2, sticky='W')
return frame