def advection(Dt, i, z, Ux_moy, Uy_moy, Ux_rms, Uy_rms, display=True):
"""
Advect the current profile by the instantaneous x-averaged Uz profile
"""
# first spline the vertical profile
# then,
fx = interp.splrep(z, Ux_rms, s=0) # kind='cubic')
fy = interp.splrep(z, Uy_rms, s=0) # interp1d(z, Ux_rms, kind='cubic')
dz = np.diff(z[0:2])[0]
dzi = dz / 10.
zi = np.arange(min(z) - dzi, max(z) + dzi, dzi)
dU_x = interp.splev(z, fx, der=1)
dU_y = interp.splev(z, fy, der=1)
V = Ux_moy
# dt = M.t[t0+1]-M.t[t0]
print(np.mean(Ux_rms))
print(np.max(Dt * V * dU_x))
print(np.min(Dt * V * dU_x))
Ux_adv = Ux_rms - Dt * V * dU_x
Uy_adv = Uy_rms - Dt * V * dU_y
if display:
graphes.semilogx(Ux_adv, z, fignum=i, label='r-')
graphes.semilogx(Uy_adv, z, fignum=i, label='r-')
return Ux_adv, Uy_adv
def isotropy(M, label='k^--', display=True, fignum=1):
'''for each time, compute the distribution of angles (!) in horizontal plane
at a very earlier time, should be peaked along x and y directions. Then spread in box directions.
Compute that from 5000 or 10000fps movies
'''
step = 1
tl = M.t[0:None:step]
N = 50
display_part = False
Anisotropy = np.zeros(len(tl))
Meanflow = np.zeros(len(tl))
for i, t in enumerate(tl):
print(i * 100 / len(tl))
rho, Phi = angles(M, i)
theta, U_moy, U_rms = angular_distribution(M, i)
# t,U_moy,U_rms = time_window_distribution(M,i,Dt=40)
if display_part:
graphes.hist(Phi, fignum=1, num=N)
graphes.legende('Phi', 'PDF', '')
graphes.graph(theta, U_moy, fignum=3, label='k^')
graphes.legende('$\theta$', '$U^p$',
'Angular fluctation distribution')
graphes.graph(theta, U_rms, fignum=4, label='ro')
graphes.legende('$\theta$', '$U^p$', 'Angular average flow')
Anisotropy[i] = np.std(U_rms) / np.nanmean(U_rms)
Meanflow[i] = np.std(U_moy) / np.nanmean(U_rms)
graphes.semilogx(tl,
Anisotropy,
label='ro',
fignum=fignum,
subplot=(1, 2, 1))
graphes.legende('Time (s)', 'I', 'Anisotropy' + graphes.set_title(M))
graphes.set_axes(10**-2, 10**4, 0, 2)
graphes.semilogx(tl,
Meanflow,
label='k^',
fignum=fignum,
subplot=(1, 2, 2))
graphes.legende('Time (s)', '<U>', 'Average flow')
graphes.set_axes(10**-2, 10**4, 0, 4)
def taylor_scale(M, fignum=1, display=True, label='k^'):
#author: stephane
nx, ny, nt = M.shape()
t = M.t
Dt = 20
step = 1
lambda_R = {}
Urms = []
t_R = []
for i in range(Dt, nt - Dt, step):
t_R.append(t[i])
lambdas, U = compute(M, i, Dt=Dt)
Urms.append(U)
if lambda_R == {}:
for key in lambdas.keys():
lambda_R[key] = [lambdas[key]]
else:
for key in lambdas.keys():
lambda_R[key] += [lambdas[key]]
graphes.semilogx(t_R,
lambda_R['t_moy'],
fignum=fignum,
label=label[0] + '^')
graphes.semilogx(t_R,
lambda_R['l_moy'],
fignum=fignum,
label=label[0] + '>')
graphes.graphloglog(t_R,
np.asarray(Urms) * np.asarray(lambda_R['t_moy']),
fignum=fignum + 1,
label=label)
graphes.graphloglog(np.asarray(Urms),
np.asarray(lambda_R['t_moy']),
fignum=fignum + 2,
label=label)
graphes.legende('<U' '>', 'lambda', '')
def display_profile(M,
i,
t0,
z,
Ux_moy,
Uy_moy,
Ux_rms,
Uy_rms,
Dt=1,
fig=1,
logscale=True):
t = M.t[t0]
U_noise_low, U_noise_high = check.bounds(M, t0)
graphes.set_fig(fig)
title = 't=' + str(int(t * 1000)) + ' ms' + 'Urms_zprofile'
Dir = M.fileDir + 'Velocity_distribution_log_M_2015_12_28_Meanfield' + '/'
z, Ux_th = fit_profile(M, t0, z, Ux_rms, p=9, log=True)
z, Uy_th = fit_profile(M, t0, z, Uy_rms, p=9, log=True)
# Ux_adv,Uy_adv = advection(Dt,z,Ux_moy,Uy_moy,Ux_rms,Uy_rms)
# print(Ux_adv/Ux_rms)
# print(Ux_adv)
figs = {}
if logscale:
# graphes.semilogx(Ux_rms,z,fignum=0,label='bo--')
graphes.semilogx(Uy_rms, z, fignum=i, label='k^--')
graphes.semilogx([U_noise_low, U_noise_low], [-400, -100],
fignum=i,
label='r--')
graphes.semilogx([U_noise_high, U_noise_high], [-400, -100],
fignum=i,
label='r--')
# graphes.semilogx(np.sqrt(np.power(Ux_moy,2)),z,fignum=i,label='b+--')
# graphes.semilogx(np.sqrt(np.power(Uy_moy,2)),z,fignum=i,label='c ^--')
graphes.set_axis(10**0, 10**4, -300, -120)
figs.update(graphes.legende('$U_{rms} (t/t_0)$', '$z$ (m)', ''))
file = graphes.set_title(M, title)
filename = Dir + file
else:
graphes.graph(Ux_rms, z, fignum=0, label='bo--')
graphes.graph(Uy_rms, z, fignum=i, label='k^--')
# graphes.semilogx(Ux_th,z,fignum=i,label='r-')
# graphes.semilogx(Uy_th,z,fignum=i,label='r-')
graphes.graph([U_noise_low, U_noise_low], [-400, -100],
fignum=i,
label='r--')
graphes.graph([U_noise_high, U_noise_high], [-400, -100],
fignum=i,
label='r--')
graphes.graph(np.sqrt(np.power(Ux_moy, 2)), z, fignum=i, label='b+--')
graphes.graph(np.sqrt(np.power(Uy_moy, 2)), z, fignum=i, label='c ^--')
graphes.set_axis(0, 2.5 * 10**3, -300, -120)
figs.update(graphes.legende('$U_{rms} (t/t_0)$', '$z$ (m)', ''))
file = graphes.set_title(M, title)
filename = Dir + file
graphes.save_figs(figs,
savedir='./Spreading/Stat_average_lin/',
suffix='',
prefix='2015_12_28_front_' + str(t0),
frmt='png')
return figs
def spreading(Mlist, logscale=False):
labels = ['k^', 'ro', 'bs']
M = Mlist[0]
nx, ny, nt = M.shape()
# for i,M in enumerate(Mlist):
# vertical_spreading(M,10,Dt=20,label=labels[i])
print(M.shape())
frame = range(10, 350, 10)
Dt = np.asarray(
[M.t[frame[i]] - M.t[frame[i - 1]] for i in range(1, len(frame))])
# print(Dt)
# Ux_adv = np.zeros(nx)
# Uy_adv = np.zeros(ny)
D = 5 * 10**2
z_init, U_init = initial_shape(offset=140)
t_init = 0.026
for i, t0 in enumerate(frame[:-1]):
z, Ux_moy, Uy_moy, Ux_rms, Uy_rms = profile_average(Mlist,
t0,
Dt=10,
display=False)
print(M.t[t0])
z_dif, U_dif = solve_diffusion(-z_init, U_init, D, M.t[t0] - t_init)
# print(U_dif)
if i == 0:
fx = interp.splrep(z, Ux_rms, s=2) # kind='cubic')
fy = interp.splrep(z, Uy_rms,
s=2) # interp1d(z, Ux_rms, kind='cubic')
Ux_adv = interp.splev(z, fx)
Uy_adv = interp.splev(z, fy)
figs = display_profile(Mlist[0],
i,
t0,
z,
Ux_moy,
Uy_moy,
Ux_rms,
Uy_rms,
Dt=Dt[i],
fig=i,
logscale=logscale)
# Ux_adv,Uy_adv = advection(Dt[i],i,z,Ux_moy,Uy_moy,Ux_adv,Uy_adv,display=True)
graphes.semilogx(U_dif, z_dif, fignum=i, label='r-')
graphes.set_axis(10**0, 10**4, -300, -120)
graphes.save_figs(figs,
savedir='./Spreading/Diffusion_noNoise/',
suffix='',
prefix='2015_12_28_front_' + str(t0),
frmt='png')
figs = {}
graphes.set_fig(1)
figs.update(graphes.legende('$t$ (s)', '$Front position z$ (mm)', ''))
graphes.set_fig(2)
figs.update(graphes.legende('$t$ (s)', '$Front position z (log)$ (mm)',
''))
graphes.set_fig(3)
figs.update(graphes.legende('$t$ (s)', '$U_{rms}$ (mm/s)', ''))
graphes.save_figs(figs,
savedir='./Spreading/',
suffix='',
prefix='2015_12_28_all_')
def display_fft_vs_t(m, dimension='1d', Dt=20, fignum=0, label='^', display=False):
"""
Parameters
----------
m :
dimension:
Dt:
fignum:
label:
display:
Returns
-------
t, E_t
"""
display_part = True
# plt.close(1)
if dimension == '1d':
S_k_2d, kx, ky = energy_spectrum_2d(m, Dt=Dt)
S_k, k = energy_spectrum_1d(m, Dt=Dt)
if dimension == '2d':
S_k, kx, ky = energy_spectrum_2d(m, Dt=Dt)
# start=580
# end=700
# step=10
# print(S_k)
if dimension == '1d':
x = [10 ** 0, 10 ** 1.5]
y = [10 ** -0.5, 10 ** -3]
# graphes.graph(x,y,-1,'r-')
# t0=590
# time_serie=range(t0+10,10000,50)#[round(t0*i**2) for i in np.arange(1,4,0.3)]
# origin of time
t0 = 0. # .51
tref = np.asarray(m.t) - t0
# tref=1-tref
nt = len(tref)
# time_serie=[600,900,1200,1600,1900,2900,5000,8000]
# time_serie=[i for i in np.arange(400,650,10)]
# time_serie=range(10,nt-2)
step = 1
time_serie = range(Dt + 1, nt - Dt * 3 - 11, step) # [50,120,200,300,400,450,550]
# print(nt-Dt*3-11)
# t0=500
# time_serie=[round(i)+t0 for i in np.logspace(1,3.973) if round(i)+t0<nt]
# time_serie=range(start,end,50)
alpha = np.zeros(len(time_serie))
beta = np.zeros(len(time_serie))
epsilon = np.zeros(len(time_serie))
t_alpha = np.zeros(len(time_serie))
# graphes.hist(k)
kmin = -2.7
kmax = -1.7
# print(np.log10(k))
tmax = 300;
for i, t in enumerate(time_serie):
# print(t)
if tref[t] < tmax:
if dimension == '1d':
k_log = np.log10(k)
S_log = np.log10(S_k[:, t])
indices = np.logical_and(k_log > kmin, k_log < kmax)
# print(indices)
# print(S_log)
k_log = k_log[indices]
S_log = S_log[indices]
P = np.polyfit(k_log, S_log, 1)
alpha[i] = 10 ** P[1] # *np.mean(k)**P[0]
beta[i] = P[0]
C_k = 0.55
epsilon[i] = (alpha[i] / C_k) ** (3 / 2)
t_alpha[i] = tref[t]
# if t>min(time_serie):
# Dt=tref[time_serie.index(t)]-tref[time_serie.index(t-1)]
# print(Dt,alpha[time_serie.index(t)])
# print((t_alpha,alpha))
if display_part:
graphes.set_fig(1)
# graphes.subplot(1,2,1)
k0 = np.min(k);
display_fft_1d(k, (k / k0) ** (5 / 3) * S_k[:, t] / alpha[i], fignum=1, label='')
display_fft_1d(k, (k / k0) * S_k[:, t] / alpha[i], fignum=2, label='')
# normalized
# print(t_alpha[i])
# display_fft_1d(k,np.abs(S_k[:,t]/t_alpha[i]),fignum=1)
# graphes.graphloglog(k[indices],10**np.polyval(P,k_log),label='r--')
display_fft(m, t, dimension)
# graphes.subplot(1,2,2)
# graphes.vfield_plot(m,t,fignum=2)
# there is a slighlty degeneracy of the spectrum along both axis. Removes |kx| < epsilon and |ky| < epsilon for every k ?
# display_fft_2d(kx,ky,S_k_2d[:,:,t],fignum=3)
# display_fft(m,t,dimension)
# input()
if dimension == '2d':
display_fft_2d(kx, ky, S_k[:, :, t])
display_fft(m, t, dimension)
if display:
# title='$Z$ = '+str(m.Sdata.param.Zplane/10)+' cm'
# graphes.legende('$t$ (s)','$E (a.u.)$',title
graphes.graphloglog(t_alpha, alpha, label=label, fignum=7)
graphes.graphloglog([10 ** -1, 10 ** 3], [10 ** 8, 10 ** 0], label='r--', fignum=7)
graphes.legende('$t$ (s)', '$E_{\lambda}$ (a.u.)', graphes.set_title(m))
graphes.semilogx(t_alpha, beta, label=label, fignum=8)
# graphes.semilogx(t_alpha,beta,label=label,fignum=0)
graphes.semilogx([10 ** -1, 10 ** 3], [-5 / 3, -5 / 3], label='r-', fignum=8)
graphes.set_axis(10 ** -1, 10 ** 3, -2.5, 0)
graphes.legende('$t$ (s)', 'exponent', graphes.set_title(m))
# plot the dissipative scale as a function of time
nu = 1 # in mm^2/s
eta = (nu ** 3 / np.asarray(epsilon)) ** (1 / 4)
graphes.graphloglog(t_alpha, eta, label=label, fignum=9)
graphes.graphloglog([10 ** -1, 10 ** 3], [10 ** 8, 10 ** 0], label='r--', fignum=9)
graphes.legende('$t$ (s)', '$\eta$ (mm)', graphes.set_title(m))
E_t = epsilon
t = t_alpha
return t, E_t