class NewTrackSequence(twf.TableForm):
file_upload = twf.FileField(label='Upload : ',
help_text='Upload file from filesystem')
url = twf.TextField(label='Url : ', help_text='Provide an url')
sequence_id = twf.HiddenField()
track_admin = twf.HiddenField()
submit = twf.SubmitButton(id="submit", value="New")
class NewPresentationForm(AddRecordForm):
__model__ = Presentation
__require_fields__ = ['title', 'date']
__omit_fields__ = ['files', '_other_authors']
__field_order__ = [
'title', 'description', 'date', 'thumbnail', 'repo_url', 'authors',
'other_authors', 'file', 'file_description', 'file_2',
'file_2_description', 'file_3', 'file_3_description'
]
__base_validator__ = form_validator
other_authors = twf.TextField('other_authors',
placeholder='Separate by commas')
repo_url = twf.UrlField('repo_url')
# this sucks, but I can't figure out a cleaner, simpler way of doing it
file = twf.FileField('file')
file_description = twf.TextField('file_description')
file_2 = twf.FileField('file_2')
file_2_description = twf.TextField('file_2_description')
file_3 = twf.FileField('file_3')
file_3_description = twf.TextField('file_3_description')
class NewTrackPrefilled(twf.TableForm):
file_upload = twf.FileField(label='Upload : ',
help_text='Upload file from filesystem')
url = twf.TextField(label='Url : ', help_text='Provide an url')
trackname = twf.TextField(label='Name : ')
extension = twf.TextField(
label='Extension : ',
help_text=
"Specify the extension of your file if it's not already provided by your file name."
)
project_id = twf.HiddenField()
submit = twf.SubmitButton(id="submit", value="New")
class child(twf.TableLayout):
file = twf.FileField(validator=twf.FileValidator(required=True, extention='.html'))
email = twf.TextField(validator=twc.EmailValidator(required=True))
# confirm_email = twf.TextField()
class fred(twf.GridLayout):
repetitions = 3
class child(twf.RowLayout):
bob = twf.TextField()
rob = twf.TextField()
validator = twc.MatchValidator('bob', 'rob')
select = twf.SingleSelectField(options=list(enumerate(opts)), validator=twc.Validator(required=True), item_validator=twc.IntValidator())
class NewTrack(twf.TableForm):
file_upload = twf.FileField(label='Upload : ',
help_text='Upload file from filesystem')
url = twf.TextField(label='Url : ', help_text='Provide an url')
smapping = twf.HiddenField()
trackname = twf.TextField(label='Name : ')
extension = twf.TextField(
label='Extension : ',
help_text=
"Specify the extension of your file if it's not already provided by your file name."
)
species = twf.SingleSelectField(label='Species :')
assembly = twf.SingleSelectField(label='Assembly :', options=[])
submit = twf.SubmitButton(id="submit", value="New")
class MultipleFileUpload(twd.GrowingGridLayout):
f = twf.FileField()
more = twf.CheckBox()
def clone_form(user_lab, id_object):
'''
to clone dynamic measurement form
'''
lab = DBSession.query(Labs).filter(Labs.name == user_lab).first()
#static list ]
list_static = [
twf.HiddenField(id="IDselected", label_text="ID selected :"),
twf.TextField(id="name",
label_text="Name :",
placeholder="Measurement name...",
validator=twc.Validator(required=True)),
twf.TextArea(id="description", label_text="Description :"),
twf.MultipleSelectField(
id="samples",
label_text="Your samples : ",
help_text="You can add some of your existing data to this project."
),
twf.CheckBox(
id="status_type",
label_text="Privacy : ",
help_text=
"Check to have it available from outside EPFL (required for UCSC visualisation)"
),
twf.CheckBox(id="type",
label_text="Raw data : ",
help_text="Check if raw data"),
#twf.MultipleSelectField(id="parents", label_text="Parents : ", help_text="Parent(s) of this measurement."),
twd.HidingRadioButtonList(id="upload_way",
label_text='Upload my file via...',
options=('my computer', 'a Vital-IT path',
'a URL'),
mapping={
'my computer': ['upload'],
'a Vital-IT path': ['vitalit_path'],
'a URL': ['url_path', 'url_up'],
}),
twf.FileField(id="upload", help_text='Please provide a data'),
twf.TextField(id="vitalit_path",
label_text="Scratch path",
placeholder="/scratch/el/biorepo/dropbox/"),
twf.TextField(id="url_path",
label_text="File's url",
placeholder="http://www..."),
twf.CheckBox(id="url_up",
label_text="I want to upload the file from this URL : ",
help_text="tick it if you want to download it in BioRepo")
]
list_dynamic = []
if lab is None:
print "----- no dynamic fields detected ---------"
list_fields = [list_static, list_dynamic]
return list_fields
else:
to_clone = DBSession.query(Measurements).filter(
Measurements.id == int(id_object)).first()
tag = "measurements"
if to_clone is not None:
list_dynamic_attributes = to_clone.attributs
for att in list_dynamic_attributes:
if att.deprecated == False:
twf_type = convert_widget(att.widget)
twf_type.id = att.key
list_a_values = att.values
if att.widget == "textfield" or att.widget == "textarea" or att.widget == "hiding_textfield" or att.widget == "hiding_textarea":
for v in list_a_values:
if hasattr(v, tag):
value_object = getattr(v, tag)
if to_clone in value_object:
twf_type.value = v.value
list_dynamic.append(twf_type)
elif att.widget == "checkbox" or att.widget == "hiding_checkbox":
for v in list_a_values:
if hasattr(v, tag):
value_object = getattr(v, tag)
if to_clone in value_object:
#dynamic boolean are stored in varchar in the db, we have to cast them in boolean for the display
value_2_display = check_boolean(v.value)
twf_type.value = value_2_display
list_dynamic.append(twf_type)
elif att.widget == "multipleselectfield" or att.widget == "hiding_multipleselectfield":
list_possible_values = []
for v in list_a_values:
list_possible_values.append(v.value)
twf_type.options = list_possible_values
selected_values = []
for v in list_a_values:
if hasattr(v, tag):
value_object = getattr(v, tag)
if to_clone in value_object:
selected_values.append(v.value)
twf_type.value = selected_values
list_dynamic.append(twf_type)
elif att.widget == "singleselectfield" or att.widget == "hiding_singleselectfield":
list_possible_values = []
for v in list_a_values:
if v.value not in list_possible_values:
list_possible_values.append(v.value)
twf_type.options = list_possible_values
for v in list_a_values:
if hasattr(v, tag):
value_object = getattr(v, tag)
if to_clone in value_object:
twf_type.value = v.value
list_dynamic.append(twf_type)
else:
print "Your measurement was not found. ID problem. id :", id_object
raise
list_fields = [list_static, list_dynamic]
return list_fields
def new_form_parents(user_lab):
'''for new form with parents'''
lab = DBSession.query(Labs).filter(Labs.name == user_lab).first()
#static lists
list_static_samples = [
twf.SingleSelectField(id="project",
label_text="Your projects : ",
help_text="Select project for this sample",
prompt_text=None),
twf.TextField(id="name",
label_text="Name :",
validator=twc.Validator(required=True)),
twf.SingleSelectField(id="type",
label_text="Type : ",
help_text="Technique used",
prompt_text=None),
twf.TextArea(
id="protocole",
label_text="Protocole :",
)
]
list_static_measurements = [
twf.HiddenField(id="IDselected", label_text="ID selected :"),
twf.TextField(id="name",
label_text="Name :",
placeholder="Measurement name...",
validator=twc.Validator(required=True)),
twf.TextArea(id="description", label_text="Description :"),
twf.MultipleSelectField(
id="samples",
label_text="Your samples : ",
help_text="You can add some of your existing data to this project."
),
twf.CheckBox(
id="status_type",
label_text="Privacy : ",
help_text=
"Check to have it available from outside EPFL (required for UCSC visualisation)"
),
twf.CheckBox(id="type",
label_text="Raw data : ",
help_text="Check if raw data"),
twf.MultipleSelectField(id="parents",
label_text="Parents : ",
help_text="Parent(s) of this measurement."),
twd.HidingRadioButtonList(id="upload_way",
label_text='Upload my file via...',
options=('my computer', 'a Vital-IT path',
'a URL'),
mapping={
'my computer': ['upload'],
'a Vital-IT path': ['vitalit_path'],
'a URL': ['url_path', 'url_up'],
}),
twf.FileField(id="upload", help_text='Please provide a data'),
twf.TextField(id="vitalit_path",
label_text="Scratch path",
placeholder="/scratch/el/biorepo/dropbox/"),
twf.TextField(id="url_path",
label_text="File's url",
placeholder="http://www..."),
twf.CheckBox(id="url_up",
label_text="I want to upload the file from this URL : ",
help_text="tick it if you want to download it in BioRepo")
]
list_dynamic_samples = []
list_hiding_samples = []
list_dynamic_measurements = []
list_hiding_meas = []
#catch the dynamic hiding fields
dic_hiding_meas = session.get("hiding_meas", {})
dic_hiding_samples = session.get("hiding_sample", {})
if lab is None:
print "----- no dynamic fields detected ---------"
list_fields = [
list_static_samples, list_dynamic_samples,
list_static_measurements, list_dynamic_measurements
]
return list_fields
else:
lab_id = lab.id
list_attributs = DBSession.query(Attributs).filter(
Attributs.lab_id == lab_id).all()
if len(list_attributs) > 0:
#lists_construction(list_attributs)
for a in list_attributs:
attribut_key = a.key
deprecated = a.deprecated
fixed_value = a.fixed_value
widget = a.widget
owner = a.owner
#############################
######### NEW SAMPLE ########
#############################
if owner == "sample":
#dynamic
if not deprecated and fixed_value:
twf_type = convert_widget(widget)
twf_type.id = attribut_key
if widget == "multipleselectfield" or widget == "singleselectfield":
list_values = []
list_attributes_values = DBSession.query(
Attributs_values).filter(
Attributs_values.attribut_id ==
a.id).all()
for av in list_attributes_values:
if not av.deprecated and av.value not in list_values:
list_values.append(av.value)
twf_type.options = list_values
list_dynamic_samples.append(twf_type)
elif widget == "checkbox":
list_dynamic_samples.append(twf_type)
elif widget == "hiding_singleselectfield":
list_values = []
list_attributes_values = DBSession.query(
Attributs_values).filter(
Attributs_values.attribut_id ==
a.id).all()
for av in list_attributes_values:
if not av.deprecated and av.value not in list_values:
list_values.append(av.value)
twf_type.options = list_values
list_hiding_samples.append(twf_type)
elif widget == "hiding_checkbox":
list_hiding_samples.append(twf_type)
else:
print widget, "-----ERROR----- ELSE, type samples widget in forms.py"
elif not deprecated and not fixed_value:
twf_type = convert_widget(widget)
twf_type.id = attribut_key
if widget == "textfield" or widget == "textarea":
twf_type.placeholder = "Write here..."
list_dynamic_samples.append(twf_type)
elif widget == "checkbox":
list_dynamic_samples.append(twf_type)
elif widget == "hiding_textfield" or widget == "hiding_textarea":
twf_type.placeholder = "Write here..."
list_hiding_samples.append(twf_type)
elif widget == "hiding_checkbox":
list_hiding_samples.append(twf_type)
else:
print widget, "WIDGET SAMPLE NOT FOUND, add an elif please"
raise
elif deprecated:
pass
else:
print "WIDGET SAMPLES ERROR : widget type is not known --> ", widget
raise
################################
######## NEW MEASUREMENT #######
################################
elif owner == "measurement":
#dynamic
#for attributes with fixed values
if not deprecated and fixed_value:
twf_type = convert_widget(widget)
twf_type.id = attribut_key
if widget == "multipleselectfield" or widget == "singleselectfield":
list_values = []
list_attributes_values = DBSession.query(
Attributs_values).filter(
Attributs_values.attribut_id ==
a.id).all()
for av in list_attributes_values:
if not av.deprecated and av.value not in list_values:
list_values.append(av.value)
twf_type.options = list_values
list_dynamic_measurements.append(twf_type)
elif widget == "hiding_singleselectfield":
list_values = []
list_attributes_values = DBSession.query(
Attributs_values).filter(
Attributs_values.attribut_id ==
a.id).all()
for av in list_attributes_values:
if not av.deprecated and av.value not in list_values:
list_values.append(av.value)
twf_type.options = list_values
list_hiding_meas.append(twf_type)
#elif widget == "checkbox":
#list_dynamic_measurements.append(twf_type)
else:
print widget, "-----ERROR----- ELSE, type measurements widget in forms.py"
raise
#for others attributes
elif not deprecated and not fixed_value:
twf_type = convert_widget(widget)
twf_type.id = attribut_key
if widget == "textfield" or widget == "textarea":
twf_type.placeholder = "Write here..."
list_dynamic_measurements.append(twf_type)
elif widget == "checkbox":
list_dynamic_measurements.append(twf_type)
elif widget == "hiding_textfield" or widget == "hiding_textarea":
twf_type.placeholder = "Write here..."
list_hiding_meas.append(twf_type)
elif widget == "hiding_checkbox":
list_hiding_meas.append(twf_type)
else:
print widget, "WIGDET MEASUREMENT NOT FOUND, add an elif please"
raise
elif deprecated:
pass
#in bugs case
else:
print "WIDGET MEASUREMENTS ERROR : widget type is not known --> ", widget
raise
#TO TEST WITH SEVERAL TWD OBJECTS
#build dynamic dynamic fields
#samples
list_twd_s = []
for k in dic_hiding_samples:
twd_object = twd.HidingRadioButtonList()
twd_object.id = k
dico_mapping = dic_hiding_samples[k]
options = []
for key in dico_mapping.keys():
options.append(key)
twd_object.options = options
twd_object.mapping = dico_mapping
list_twd_s.append(twd_object)
list_dynamic_samples = list_dynamic_samples + list_twd_s + list_hiding_samples
#measurements
list_twd_m = []
for k in dic_hiding_meas:
twd_object = twd.HidingRadioButtonList()
twd_object.id = k
dico_mapping = dic_hiding_meas[k]
options = []
for key in dico_mapping.keys():
options.append(key)
twd_object.options = options
twd_object.mapping = dico_mapping
list_twd_m.append(twd_object)
list_dynamic_measurements = list_dynamic_measurements + list_twd_m + list_hiding_meas
list_fields = [
list_static_samples, list_dynamic_samples,
list_static_measurements, list_dynamic_measurements
]
return list_fields
else:
print "-----forms.py----- Houston, we have a problem : The lab ", lab.name, " doesn't get any attributes -----"
raise