def __init__(self):
super().__init__()
fields = QFormLayout()
self.regulations = list()
self.reaction_name = QLineEdit()
self.transcription_rate = QLineEdit()
self.transcription_rate.setValidator(helper.get_double_validator())
self.transcribed_species = common_widgets.make_species_combo()
self.transcribed_species.currentIndexChanged.connect(self._transcribed_species_current_index_changed)
self.is_regulated = QCheckBox("Is Regulated")
self.is_regulated.stateChanged.connect(self._is_regulated_state_changed)
self.regulation_settings_panel = self._make_regulation_settings_panel()
fields.addRow(QLabel("Reaction name"), self.reaction_name)
fields.addRow(QLabel("Transcription rate"), self.transcription_rate)
fields.addRow(QLabel("Transcribed species: "), self.transcribed_species)
fields.addRow(self.is_regulated)
fields.addRow(self.regulation_settings_panel)
self._is_regulated_state_changed()
self.setLayout(fields)
def _init_fields(self):
fields = QFormLayout()
self.lhs = common_widgets.make_species_combo()
self.rhs = QLineEdit()
self.rhs.setValidator(helper.get_double_validator())
self.rhs.setPlaceholderText("Constraint value")
self.sign_combo = QComboBox()
self.sign_combo.addItems([">=", "<="])
constraint_box = QHBoxLayout()
constraint_box.addWidget(self.lhs)
constraint_box.addWidget(self.sign_combo)
constraint_box.addWidget(self.rhs)
fields.addRow("Constraint (e.g. X >= 20)", constraint_box)
self.time_lb = QLineEdit()
self.time_lb.setValidator(helper.get_double_validator())
self.time_lb.setPlaceholderText("Start")
self.time_ub = QLineEdit()
self.time_ub.setValidator(helper.get_double_validator())
self.time_ub.setPlaceholderText("End")
time_box = QHBoxLayout()
time_box.addWidget(self.time_lb)
time_box.addWidget(QLabel("-"))
time_box.addWidget(self.time_ub)
fields.addRow("Time period (e.g. 0 - 20)", time_box)
self.layout.addLayout(fields)
def _init_custom_reaction_fields(self):
fields = QFormLayout()
self.reaction_name4 = QLineEdit()
fields.addRow(QLabel("Reaction name"), self.reaction_name4)
self.equation = QLineEdit()
fields.addRow(QLabel("Equation: "), self.equation)
self.reactant = common_widgets.make_species_combo()
fields.addRow(QLabel("Reactant: "), self.reactant)
self.product = common_widgets.make_species_combo()
fields.addRow(QLabel("Product: "), self.product)
self.custom_fields = QWidget()
self.custom_fields.setLayout(fields)
self.properties_layout.addWidget(self.custom_fields)
self.custom_fields.hide()
def _init_translation_fields(self):
fields = QFormLayout()
self.reaction_name2 = QLineEdit()
fields.addRow(QLabel("Reaction name"), self.reaction_name2)
self.translation_rate = QLineEdit()
self.translation_rate.setValidator(helper.get_double_validator())
fields.addRow(QLabel("Translation rate: "), self.translation_rate)
self.translated_mrna = common_widgets.make_species_combo()
fields.addRow(QLabel("Translated mRNA: "), self.translated_mrna)
self.produced_protein = common_widgets.make_species_combo()
fields.addRow(QLabel("Produced protein: "), self.produced_protein)
self.translation_fields = QWidget()
self.translation_fields.setLayout(fields)
self.properties_layout.addWidget(self.translation_fields)
self.translation_fields.hide()
def _init_degradation_fields(self):
fields = QFormLayout()
self.reaction_name3 = QLineEdit()
fields.addRow(QLabel("Reaction name"), self.reaction_name3)
self.decay_rate = QLineEdit()
self.decay_rate.setValidator(helper.get_double_validator())
fields.addRow(QLabel("Decay rate: "), self.decay_rate)
self.decaying_species = common_widgets.make_species_combo()
fields.addRow(QLabel("Decaying species: "), self.decaying_species)
self.degradation_fields = QWidget()
self.degradation_fields.setLayout(fields)
self.properties_layout.addWidget(self.degradation_fields)
self.degradation_fields.hide()
def _make_add_regulation_box(self):
self.activation_radio = QRadioButton("Activation")
self.repression_radio = QRadioButton("Repression")
self.regulator = common_widgets.make_species_combo()
self.k = QLineEdit()
self.k.setValidator(helper.get_double_validator())
self.add_button = QPushButton("Add regulation")
self.add_button.clicked.connect(self._add_regulation_clicked)
fields = QFormLayout()
fields.addRow(self.activation_radio, self.repression_radio)
fields.addRow(QLabel("Regulating species:"), self.regulator)
fields.addRow(QLabel("K:"), self.k)
fields.addRow(self.add_button)
add_regulation_box = QGroupBox()
add_regulation_box.setLayout(fields)
return add_regulation_box