def load():
from ui.whiskerdata import load_whiskers, load_trajectories
from ui.genetiff import Reader
movie = Reader('../../data/seq/whisker_data_0140.seq',adjuststipple=1)
w,wid = load_whiskers('seq.whiskers')
#w,wid = load_whiskers('whisk-vc/whisk-vc/seq.whiskers')
#movie = Reader('../../data/JF8410_041808_001.tif',adjuststipple=1)
#w,wid = load_whiskers('test.whiskers')
#w,wid = load_whiskers('results/seq-hand.whiskers')
#t,tid = load_trajectories('results/seq-hand.trajectories')
return w,movie
def setUp(self):
self.movie = Reader('data/curated/huber/whisker_data_0024.seq')
self.gold_wv = trace.find_segments(self.movie[0])
def thumbnail(target, source, env):
import Image
Image.fromarray(Reader(source[0].path)[0]).save(target[0].path)
Copyright (c) 2009 HHMI. Free downloads and distribution are allowed for any
non-profit research and educational purposes as long as proper credit is given
to the author. All other rights reserved.
"""
from pylab import *
from numpy import *
import trace
import pdb
#
# LOAD FIELDS
#
from ui.genetiff import Reader
from trace import *
#movie = Reader('../../data/S0.tif',adjuststipple=1)
#movie = Reader('../../data/seq/whisker_data_0140.seq',adjuststipple=1)
movie = Reader('../../data/JF8410_041808_001.tif', adjuststipple=1)
im = movie[0]
#h,m,s = compute_seed_fields( im, 4 )
#
# TRACING
#
def draw_whisker(image, w, thick, color):
th = arctan2(diff(w.y), diff(w.x)).mean() + pi / 2
ox, oy = thick * cos(th), thick * sin(th)
xy0 = r_[w.x + ox, w.y + oy].reshape(2, len(w.x)).T
xy1 = r_[w.x - ox, w.y - oy].reshape(2, len(w.x)).T
xy = r_[xy0, xy1[::-1]]
def load(moviename, whiskersname):
from ui.whiskerdata import load_whiskers, load_trajectories
from ui.genetiff import Reader
movie = Reader(moviename, adjuststipple=1)
w, wid = load_whiskers(whiskersname)
return w, movie