def call(self):
# 1. Register file
if self.pathToRegister:
self.fileRegistrar.registerFile(self.pathToRegister)
# 2. generate position
position = [self.collectionTime]
if self.filepathToReport:
position.append(self.filepathToReport)
processorResults = []
for processor in self.processors:
processorResults += list(
processor.getPosition(self.datasetProvider.getDataset()))
# 3. display image
if self.panelName:
#print "Plotter.plotImage(%r, ...)" % self.panelName
Plotter.plotImage(
self.panelName,
self.renderer.renderShapesOntoDataset(
self.datasetProvider.getDataset()))
if self.panelNameRCP:
#print "RCPPlotter.imagePlot(%r, ...)" % self.panelNameRCP
SDAPlotter.imagePlot(
self.panelNameRCP,
self.renderer.renderShapesOntoDataset(
self.datasetProvider.getDataset()))
metricsResults = [time.time() - self.time_created
] if self.return_performance_metrics else []
return position + metricsResults + processorResults
def imagePlot(self, panel=None):
if panel is None:
panel=self.panel;
da=self.chData.cagetArrayUnsigned();
ds = IntegerDataset.createFromObject(da);
newds=ds.reshape([self.height, self.width]);
SDAPlotter.imagePlot(panel, newds);
def imagePlot0(self, panel=None):
if panel is None:
panel=self.panel;
da=self.chData.cagetArrayByte()
ds = ByteDataset.createFromObject(da);
newds=ds.reshape([self.height, self.width]);
SDAPlotter.imagePlot(panel, newds);
def display(self, fileName):
if fileName is None:
print "Please give a full file name to display";
return;
else:
dataset = self.loadDataset(fileName)
if self.panel:
SDAPlotter.imagePlot(self.panel, dataset);
else:
print "No panel set to display"
raise Exception("No panel_name set in %s. Set this or set %s.setAlive(False)" % (self.name,self.name));
def display(self, fileName=None):
if fileName is None:
fileName = self.fileName;
self.dataHolder=dnp.io.load(fileName);
dataset = self.dataHolder[0];
if self.panel:
if self.logScale:
SDAPlotter.imagePlot(self.panel, DatasetUtils.lognorm(dataset)); #For RCP GUI
else:
SDAPlotter.imagePlot(self.panel, dataset); #For RCP GUI
else:
print "No panel set to display"
raise Exception("No panel_name set in %s. Set this or set %s.setAlive(False)" % (self.name,self.name));
def display(self, dataset=None):
if dataset is None:
if self.dataset is None:
print "No dataset to display"
return
else:
dataset = self.dataset
if self.panel:
SDAPlotter.imagePlot(self.panel, dataset)
else:
print "No panel set to display"
raise Exception(
"No panel_name set in %s. Set this or set %s.setAlive(False)" %
(self.name, self.name))
def display(self,file=None):
if file==None:
file = self.getFullFileName()
# self.data.loadPilatusData(file)
self.data.load(PilatusTiffLoader(file));
dataset = self.data.getAxis(0);
if self.panel:
if self.logScale:
SDAPlotter.imagePlot(self.panel, DatasetUtils.lognorm(dataset)); #For RCP GUI
else:
SDAPlotter.imagePlot(self.panel, dataset); #For RCP GUI
else:
print "No panel set to display"
raise Exception("No panel_name set in %s. Set this or set %s.setAlive(False)" % (self.name,self.name));
def display(self, dataset=None):
if dataset is None:
dataset = self.dataset
if dataset is None:
print("No dataset to display")
return
if self.panel:
from uk.ac.diamond.scisoft.analysis import SDAPlotter
SDAPlotter.imagePlot(self.panel, dataset)
else:
print("No panel set to display")
raise ValueError(
"No panel_name set in %s. Set this or set %s.setAlive(False)" %
(self.name, self.name))
def imagePlot2(self, panel=None):
if panel is None:
panel=self.panel;
da=self.chData.cagetArrayByte();
#To convert from singed to unsigned
#method 2
da=[x&0xff for x in da]
#method 3
# ds1=array.array('B' [x&0xff for x in ds1] )
ds = IntegerDataset.createFromObject(da);
newds=ds.reshape([self.height, self.width]);
SDAPlotter.imagePlot(panel, newds);
def display(self, retryUntilTimeout=True):
if self.panel_name == None and self.panel_name_rcp == None:
raise Exception("No panel_name or panel_name_rcp set in %s. " +
"Set this or set %s.display_image=False" %
(self.name, self.name))
if self.panel_name:
#print "Plotter.plotImage(%r, ...)" % self.panel_name
Plotter.plotImage(
self.panel_name,
self.renderer.renderShapesOntoDataset(
self.getDataset(retryUntilTimeout)))
if self.panel_name_rcp:
#print "RCPPlotter.imagePlot(%r, ...)" % self.panel_name_rcp
SDAPlotter.imagePlot(
self.panel_name_rcp,
self.renderer.renderShapesOntoDataset(
self.getDataset(retryUntilTimeout)))
def display(self, file=None):
if file == None:
file = self.getFullFileName()
# self.data.loadPilatusData(file)
self.data.load(PilatusTiffLoader(file))
dataset = self.data.getAxis(0)
if self.panel:
if self.logScale:
SDAPlotter.imagePlot(self.panel, DatasetUtils.lognorm(dataset))
#For RCP GUI
else:
SDAPlotter.imagePlot(self.panel, dataset)
#For RCP GUI
else:
print "No panel set to display"
raise Exception(
"No panel_name set in %s. Set this or set %s.setAlive(False)" %
(self.name, self.name))
def display(self, file=None):
if file is None:
file = self.fileName
# self.dataHolder.loadPilatusData(file)
# self.dataHolder.load(PilatusTiffLoader(file));
# dataset = self.dataHolder.getAxis(0);
self.dataHolder = dnp.io.load(file)
dataset = self.dataHolder[0]
if self.panel:
if self.logScale:
SDAPlotter.imagePlot(self.panel, DatasetMaths.lognorm(dataset))
#For RCP GUI
else:
SDAPlotter.imagePlot(self.panel, dataset)
#For RCP GUI
else:
print "No panel set to display"
raise Exception(
"No panel_name set in %s. Set this or set %s.setAlive(False)" %
(self.name, self.name))
def plot_image(*arg, **kwarg):
_plotter.imagePlot(*arg, **kwarg)
def plot_image(*arg, **kwarg):
_plotter.imagePlot(*arg, **kwarg)
