#-*- coding:utf-8 -*-
from data_extension import DataExtension
from unet import UNet
import cv2
if __name__ == '__main__':
de = DataExtension()
# 扩展数据
de.data_extension()
# 创建训练集
de.create_train_data()
# 加载训练集
train_img, train_lbl = de.load_train_data()
unet = UNet()
#unet.unet_train(train_img, train_lbl)
img = cv2.imread('./data/test/test.png')
label = unet.unet_predict_img(img)
cv2.imwrite('test_label.png', label)
Date created: 11/3/2020
Date last modified: 11/24/2020
Python Version: 3
"""
import numpy as np
import matplotlib.pyplot as plt
from data import test_generator, test_data
from setting import *
from unet import UNet
"""
Do evaluation with result from train.py
"""
model = UNet((IMG_HEIGHT, IMG_WIDTH, IMG_CHANNELS))
model.load_weights("unet.hdf5")
results = model.evaluate(test_generator,
verbose=1,
steps=len(test_data) / BATCH_SIZE,
return_dict=True)
print('Evaluation dice coefficient is', results['dice_coef'])
"""
plot image for samples
"""
batches = 2
plt.figure(figsize=(10, 10))
for i in range(batches):
img, mask = next(test_generator)
class TextRemoval(object):
"""Implementation of Noise2Noise from Lehtinen et al. (2018)."""
def __init__(self, params, trainable):
"""Initializes model."""
self.p = params
self.trainable = trainable
self._compile()
def _compile(self):
"""Compiles model (architecture, loss function, optimizers, etc.)."""
# Model (3x3=9 channels for Monte Carlo since it uses 3 HDR buffers)
self.model = UNet(in_channels=3)
# Set optimizer and loss, if in training mode
if self.trainable:
self.optim = Adam(self.model.parameters(),
lr=self.p.learning_rate,
betas=self.p.adam[:2],
eps=self.p.adam[2])
# Learning rate adjustment
self.scheduler = lr_scheduler.ReduceLROnPlateau(self.optim,
patience=self.p.nb_epochs/4, factor=0.5, verbose=True)
# Loss function
self.loss = nn.L1Loss()
# CUDA support
self.use_cuda = torch.cuda.is_available() and self.p.cuda
if self.use_cuda:
self.model = self.model.cuda()
if self.trainable:
self.loss = self.loss.cuda()
def _print_params(self):
"""Formats parameters to print when training."""
print('Training parameters: ')
self.p.cuda = self.use_cuda
param_dict = vars(self.p)
pretty = lambda x: x.replace('_', ' ').capitalize()
print('\n'.join(' {} = {}'.format(pretty(k), str(v)) for k, v in param_dict.items()))
print()
def save_model(self, epoch, stats, first=False):
"""Saves model to files; can be overwritten at every epoch to save disk space."""
# Create directory for model checkpoints, if nonexistent
if first:
ckpt_dir_name = f'{datetime.now()}'
if self.p.ckpt_overwrite:
ckpt_dir_name = self.noise_type
self.ckpt_dir = os.path.join(self.p.ckpt_save_path, ckpt_dir_name)
if not os.path.isdir(self.p.ckpt_save_path):
os.mkdir(self.p.ckpt_save_path)
if not os.path.isdir(self.ckpt_dir):
os.mkdir(self.ckpt_dir)
# Save checkpoint dictionary
if self.p.ckpt_overwrite:
fname_unet = '{}/overwrite.pt'.format(self.ckpt_dir)
else:
valid_loss = stats['valid_loss'][epoch]
fname_unet = '{}/epoch{}-{:>1.5f}.pt'.format(self.ckpt_dir, epoch + 1, valid_loss)
print('Saving checkpoint to: {}\n'.format(fname_unet))
torch.save(self.model.state_dict(), fname_unet)
# Save stats to JSON
fname_dict = '{}/stats.json'.format(self.ckpt_dir)
with open(fname_dict, 'w') as fp:
json.dump(stats, fp, indent=2)
def load_model(self, ckpt_fname):
"""Loads model from checkpoint file."""
print('Loading checkpoint from: {}'.format(ckpt_fname))
if self.use_cuda:
self.model.load_state_dict(torch.load(ckpt_fname))
else:
self.model.load_state_dict(torch.load(ckpt_fname, map_location='cpu'))
def _on_epoch_end(self, stats, train_loss, epoch, epoch_start, valid_loader):
"""Tracks and saves starts after each epoch."""
# Evaluate model on validation set
print('\rTesting model on validation set... ', end='')
epoch_time = time_elapsed_since(epoch_start)[0]
valid_loss, valid_time, valid_psnr = self.eval(valid_loader)
show_on_epoch_end(epoch_time, valid_time, valid_loss, valid_psnr)
# Decrease learning rate if plateau
self.scheduler.step(valid_loss)
# Save checkpoint
stats['train_loss'].append(train_loss)
stats['valid_loss'].append(valid_loss)
stats['valid_psnr'].append(valid_psnr)
self.save_model(epoch, stats, epoch == 0)
# Plot stats
if self.p.plot_stats:
loss_str = f'{self.p.loss.upper()} loss'
plot_per_epoch(self.ckpt_dir, 'Valid loss', stats['valid_loss'], loss_str)
plot_per_epoch(self.ckpt_dir, 'Valid PSNR', stats['valid_psnr'], 'PSNR (dB)')
def eval(self, valid_loader):
"""Evaluates denoiser on validation set."""
self.model.train(False)
valid_start = datetime.now()
loss_meter = AvgMeter()
psnr_meter = AvgMeter()
for batch_idx, (source, target) in enumerate(valid_loader):
if self.use_cuda:
source = source.cuda()
target = target.cuda()
# Denoise
source_denoised = self.model(source)
# Update loss
loss = self.loss(source_denoised, target)
loss_meter.update(loss.item())
# Compute PSRN
# TODO: Find a way to offload to GPU, and deal with uneven batch sizes
for i in range(self.p.batch_size):
source_denoised = source_denoised.cpu()
target = target.cpu()
psnr_meter.update(psnr(source_denoised[i], target[i]).item())
valid_loss = loss_meter.avg
valid_time = time_elapsed_since(valid_start)[0]
psnr_avg = psnr_meter.avg
return valid_loss, valid_time, psnr_avg
def train(self, train_loader, valid_loader):
"""Trains denoiser on training set."""
self.model.train(True)
self._print_params()
num_batches = len(train_loader)
assert num_batches % self.p.report_interval == 0, 'Report interval must divide total number of batches'
# Dictionaries of tracked stats
stats = {'noise_param': self.p.noise_param,
'train_loss': [],
'valid_loss': [],
'valid_psnr': []}
# Main training loop
train_start = datetime.now()
for epoch in range(self.p.nb_epochs):
print('EPOCH {:d} / {:d}'.format(epoch + 1, self.p.nb_epochs))
# Some stats trackers
epoch_start = datetime.now()
train_loss_meter = AvgMeter()
loss_meter = AvgMeter()
time_meter = AvgMeter()
# Minibatch SGD
for batch_idx, (source, target) in enumerate(train_loader):
batch_start = datetime.now()
progress_bar(batch_idx, num_batches, self.p.report_interval, loss_meter.val)
if self.use_cuda:
source = source.cuda()
target = target.cuda()
# Denoise image
source_denoised = self.model(source)
loss = self.loss(source_denoised, target)
loss_meter.update(loss.item())
# Zero gradients, perform a backward pass, and update the weights
self.optim.zero_grad()
loss.backward()
self.optim.step()
# Report/update statistics
time_meter.update(time_elapsed_since(batch_start)[1])
if (batch_idx + 1) % self.p.report_interval == 0 and batch_idx:
show_on_report(batch_idx, num_batches, loss_meter.avg, time_meter.avg)
train_loss_meter.update(loss_meter.avg)
loss_meter.reset()
time_meter.reset()
# Epoch end, save and reset tracker
self._on_epoch_end(stats, train_loss_meter.avg, epoch, epoch_start, valid_loader)
train_loss_meter.reset()
train_elapsed = time_elapsed_since(train_start)[0]
print('Training done! Total elapsed time: {}\n'.format(train_elapsed))
if __name__ == '__main__':
logging.basicConfig(level=logging.INFO,
format='%(levelname)s: %(message)s')
args = get_args()
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
logging.info(f'Using device {device}')
# Change here to adapt to your data
# n_channels=3 for RGB images
# n_classes is the number of probabilities you want to get per pixel
# - For 1 class and background, use n_classes=1
# - For 2 classes, use n_classes=1
# - For N > 2 classes, use n_classes=N
net = UNet(n_channels=1, n_classes=args.n_classes, bilinear=True)
logging.info(
f'Network:\n'
f'\t{net.n_channels} input channels\n'
f'\t{net.n_classes} output channels (classes)\n'
f'\t{"Bilinear" if net.bilinear else "Transposed conv"} upscaling')
if args.load:
net.load_state_dict(torch.load(args.load, map_location=device))
logging.info(f'Model loaded from {args.load}')
net.to(device=device)
# faster convolutions, but more memory
# cudnn.benchmark = True
try:
def train():
transforms = [
Transforms.RondomFlip(),
Transforms.RandomRotate(15),
Transforms.Log(0.5),
Transforms.Blur(0.2),
Transforms.ToGray(),
Transforms.ToTensor()
]
train_dataset = UNetDataset('./data/train/',
'./data/train_cleaned/',
transform=transforms)
train_dataLoader = DataLoader(dataset=train_dataset,
batch_size=config.BATCH_SIZE,
shuffle=True,
num_workers=0)
valid_dataset = UNetDataset('./data/valid/',
'./data/valid_cleaned/',
transform=transforms)
valid_dataLoader = DataLoader(dataset=valid_dataset,
batch_size=config.BATCH_SIZE,
shuffle=True,
num_workers=0)
net = UNet(n_channels=config.n_channels,
n_classes=config.n_classes).to(config.device)
writer = SummaryWriter()
optimizer = optim.Adam(net.parameters(), lr=config.LR)
if config.n_classes > 1:
loss_func = nn.CrossEntropyLoss().to(config.device)
else:
loss_func = nn.BCEWithLogitsLoss().to(config.device)
best_loss = float('inf')
if os.path.exists(config.weight_with_optimizer):
checkpoint = torch.load(config.weight_with_optimizer,
map_location='cpu')
net.load_state_dict(checkpoint['net'])
optimizer.load_state_dict(checkpoint['optimizer'])
print('load weight')
for epoch in range(config.EPOCH):
train_loss = 0
net.train()
for step, (batch_x, batch_y) in enumerate(train_dataLoader):
batch_x = batch_x.to(device=config.device)
batch_y = batch_y.squeeze(1).to(device=config.device)
output = net(batch_x)
loss = loss_func(output, batch_y)
train_loss += loss.item()
if loss < best_loss:
best_loss = loss
torch.save(
{
'net': net.state_dict(),
'optimizer': optimizer.state_dict()
}, config.best_model_with_optimizer)
torch.save({'net': net.state_dict()}, config.best_model)
optimizer.zero_grad()
loss.backward()
optimizer.step()
net.eval()
eval_loss = 0
for step, (batch_x, batch_y) in enumerate(valid_dataLoader):
batch_x = batch_x.to(device=config.device)
batch_y = batch_y.squeeze(1).to(device=config.device)
output = net(batch_x)
valid_loss = loss_func(output, batch_y)
eval_loss += valid_loss.item()
writer.add_scalar("train_loss", train_loss, epoch)
writer.add_scalar("eval_loss", eval_loss, epoch)
print("*" * 80)
print('epoch: %d | train loss: %.4f | valid loss: %.4f' %
(epoch, train_loss, eval_loss))
print("*" * 80)
if (epoch + 1) % 10 == 0:
torch.save(
{
'net': net.state_dict(),
'optimizer': optimizer.state_dict()
}, config.weight_with_optimizer)
torch.save({'net': net.state_dict()}, config.weight)
print('saved')
writer.close()
def train_net(load_pth,
device,
epochs=5,
batch_size=1,
lr=0.001,
val_percent=0.1,
save_cp=True,
img_scale=0.5):
# data load for Carvana
# dataset = BasicDataset(dir_img, dir_mask, img_scale)
# n_val = int(len(dataset) * val_percent)
# n_train = len(dataset) - n_val
# train, val = random_split(dataset, [n_train, n_val])
# train_loader = DataLoader(train, batch_size=batch_size, shuffle=True, num_workers=8, pin_memory=True)
# val_loader = DataLoader(val, batch_size=batch_size, shuffle=False, num_workers=8, pin_memory=True, drop_last=True)
# data load for VOC2007
t_loader = data_loader(voc_data_path,
sbd_path,
is_transform=True,
split='train_aug',
img_size=(500, 500))
v_loader = data_loader(voc_data_path,
sbd_path,
is_transform=True,
split='val',
img_size=(500, 500))
trainloader = DataLoader(t_loader,
batch_size=2,
num_workers=16,
shuffle=True)
valloader = DataLoader(v_loader, batch_size=2, num_workers=16)
# init model
net = UNet(n_channels=3, n_classes=t_loader.n_classes, bilinear=True)
logging.info(
f'Network:\n'
f'\t{net.n_channels} input channels\n'
f'\t{net.n_classes} output channels (classes)\n'
f'\t{"Bilinear" if net.bilinear else "Transposed conv"} upscaling')
if load_pth:
net.load_state_dict(torch.load(load_pth, map_location=device))
logging.info(f'Model loaded from {load_pth}')
net = net.to(device=device)
net = torch.nn.DataParallel(net,
device_ids=range(torch.cuda.device_count()))
writer = SummaryWriter(
comment=f'LR_{lr}_BS_{batch_size}_SCALE_{img_scale}')
global_step = 0
n_train = len(t_loader)
n_val = len(v_loader)
logging.info(f'''Starting training:
Epochs: {epochs}
Batch size: {batch_size}
Learning rate: {lr}
Training size: {n_train}
Validation size: {n_val}
Checkpoints: {save_cp}
Device: {device.type}
Images scaling: {img_scale}
''')
optimizer = optim.SGD(net.parameters(),
lr=1.0e-10,
weight_decay=0.0005,
momentum=0.99)
scheduler = optim.lr_scheduler.ReduceLROnPlateau(optimizer,
'min',
patience=2)
loss_fc = get_loss_function('cross_entropy', size_average=False)
for epoch in range(epochs):
net.train()
epoch_loss = 0
with tqdm(total=n_train,
desc=f'Epoch {epoch + 1}/{epochs}',
unit='img') as pbar:
for batch in trainloader:
imgs = batch['image']
true_masks = batch['mask']
imgs = imgs.to(device=device, dtype=torch.float32)
mask_type = torch.long
true_masks = true_masks.to(device=device, dtype=mask_type)
masks_pred = net(imgs)
loss = loss_fc(input=masks_pred, target=true_masks)
epoch_loss += loss.item()
writer.add_scalar('Loss/train', loss.item(), global_step)
pbar.set_postfix(**{'loss (batch)': loss.item()})
optimizer.zero_grad()
loss.backward()
nn.utils.clip_grad_value_(net.parameters(), 0.1)
optimizer.step()
pbar.update(imgs.shape[0])
global_step += 1
if global_step % (n_train // (10 * batch_size)) == 0:
for tag, value in net.named_parameters():
tag = tag.replace('.', '/')
writer.add_histogram('weights/' + tag,
value.data.cpu().numpy(),
global_step)
writer.add_histogram('grads/' + tag,
value.grad.data.cpu().numpy(),
global_step)
val_score = eval_net(net, valloader, loss_fc, device)
scheduler.step(val_score)
writer.add_scalar('learning_rate',
optimizer.param_groups[0]['lr'],
global_step)
logging.info(
'Validation cross entropy: {}'.format(val_score))
writer.add_scalar('Loss/test', val_score, global_step)
writer.add_images('images', imgs, global_step)
if save_cp:
try:
os.mkdir(dir_checkpoint)
logging.info('Created checkpoint directory')
except OSError:
pass
torch.save(net.state_dict(),
dir_checkpoint + f'CP_epoch{epoch + 1}.pth')
logging.info(f'Checkpoint {epoch + 1} saved !')
writer.close()
out_files = args.output
return out_files
def mask_to_image(mask):
print(mask[0].shape)
return Image.fromarray((mask[0] * 255).astype(np.uint8))
if __name__ == "__main__":
args = get_args()
in_files = args.input
out_files = get_output_filenames(args)
net = UNet(n_channels=3, n_classes=14)
logging.info("Loading model {}".format(args.model))
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
logging.info(f'Using device {device}')
net.to(device=device)
net.load_state_dict(torch.load(args.model, map_location=device))
logging.info("Model loaded !")
for i, fn in enumerate(in_files):
logging.info("\nPredicting image {} ...".format(fn))
img = Image.open(fn)
import numpy as np
import matplotlib.pyplot as plt
import random
from loader import SnakeGameDataset as dataset
from unet import UNet
import torch
from torch.autograd import Variable
from torchvision import datasets, transforms
import matplotlib.pyplot as plt
code_size = 120
autoencoder = UNet(1, in_channels=1, depth=5, start_filts=8, merge_mode='add')
autoencoder.load_state_dict(
torch.load("/home/joshua/Desktop/ConvAutoencoder/unet_model.pth"))
autoencoder.eval()
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
autoencoder.to(device)
test_data = dataset(
root_dir="/home/joshua/Desktop/ConvAutoencoder/data/testData",
transform=None,
prefix="testDataBoards1.npy")
vis_1, vis_2, vis_3 = random.choice(test_data), random.choice(
test_data), random.choice(test_data)
check_1 = torch.from_numpy(vis_1[0]).unsqueeze(0).unsqueeze(1).float()
check_2 = torch.from_numpy(vis_2[0]).unsqueeze(0).unsqueeze(1).float()
check_3 = torch.from_numpy(vis_3[0]).unsqueeze(0).unsqueeze(1).float()
res_1, res_2, res_3 = autoencoder(Variable(check_1.to(device))), autoencoder(
def main():
import os
os.environ["CUDA_VISIBLE_DEVICES"] = "0"
# Training settings
parser = argparse.ArgumentParser(
description='Scratch segmentation Example')
parser.add_argument('--batch-size',
type=int,
default=8,
metavar='N',
help='input batch size for training (default: 64)')
parser.add_argument('--test-batch-size',
type=int,
default=8,
metavar='N',
help='input batch size for testing (default: 1000)')
parser.add_argument('--epochs',
type=int,
default=200,
metavar='N',
help='number of epochs to train (default: 10)')
parser.add_argument('--lr',
type=float,
default=0.01,
metavar='LR',
help='learning rate (default: 0.01)')
parser.add_argument('--momentum',
type=float,
default=0.9,
metavar='M',
help='SGD momentum (default: 0.5)')
parser.add_argument('--no-cuda',
action='store_true',
default=False,
help='disables CUDA training')
parser.add_argument('--seed',
type=int,
default=1,
metavar='S',
help='random seed (default: 1)')
parser.add_argument(
'--log-interval',
type=int,
default=20,
metavar='N',
help='how many batches to wait before logging training status')
parser.add_argument('--optim', type=str, default='sgd', help="optimizer")
parser.add_argument('--lr-scheduler',
type=str,
default='cos',
choices=['poly', 'step', 'cos'],
help='lr scheduler mode: (default: poly)')
args = parser.parse_args()
use_cuda = not args.no_cuda and torch.cuda.is_available()
torch.manual_seed(args.seed)
device = torch.device("cuda" if use_cuda else "cpu")
print('my device is :', device)
kwargs = {'num_workers': 0, 'pin_memory': True} if use_cuda else {}
train_loader = torch.utils.data.DataLoader(FarmDataset(istrain=True),
batch_size=args.batch_size,
shuffle=True,
drop_last=True,
**kwargs)
#
startepoch = 0
model = torch.load(
'./tmp/model{}'.format(startepoch)) if startepoch else UNet(3,
4).cuda()
# optimizer = optim.SGD(model.parameters(), lr=args.lr, momentum=args.momentum)
# Define Optimizer
train_params = model.parameters()
weight_decay = 5e-4
if args.optim == 'sgd':
optimizer = torch.optim.SGD(train_params,
lr=args.lr,
momentum=args.momentum,
weight_decay=weight_decay,
nesterov=False)
elif args.optim == 'adam':
optimizer = torch.optim.Adam(train_params,
lr=args.lr,
weight_decay=weight_decay,
nesterov=False)
else:
raise NotImplementedError("Optimizer have't been implemented")
scheduler = LR_Scheduler(args.lr_scheduler,
args.lr,
args.epochs,
157,
lr_step=10,
warmup_epochs=10)
for epoch in range(startepoch, args.epochs + 1):
train(args, model, device, train_loader, optimizer, epoch, scheduler)
if epoch > 50:
torch.save(model, './tmp/model{}'.format(epoch))
elif epoch % 10 == 0:
torch.save(model, './tmp/model{}'.format(epoch))
import cv2
import numpy as np
import torch
import os
from unet import UNet
weight = './weight/weight.pth'
device = torch.device("cuda:0" if torch.cuda.is_available() else "cpu")
# load net
print('load net')
net = UNet(1, 2).to(device)
if os.path.exists(weight):
checkpoint = torch.load(weight)
net.load_state_dict(checkpoint['net'])
else:
exit(0)
# load img
print('load img')
dir = './data/test/'
filenames = [
os.path.join(dir, filename) for filename in os.listdir(dir)
if filename.endswith('.jpg') or filename.endswith('.png')
]
totalN = len(filenames)
for index, filename in enumerate(filenames):
img = cv2.imread(filename, 0)
if img is None:
print('img is None')
def pro(path):
n_class = 3
model = UNet(n_channels=3, n_classes=n_class)
model = nn.DataParallel(model, device_ids=[0])
model.load_state_dict(torch.load('trainmodels.pth'))
tensor2pil = transforms.ToPILImage('RGB')
img2tensor = transforms.ToTensor()
transform = transforms.Compose([
transforms.ToTensor(),
transforms.Normalize(mean=[0.3301, 0.3301, 0.3301],
std=[0.1938, 0.1938, 0.1938])
])
image = Image.open(path).convert('RGB')
image = image.resize((224, 224), Image.ANTIALIAS)
in_img_tensor = transform(image)
in_img_origin = img2tensor(image)
n = in_img_tensor.size()
data = torch.ones(1, 3, n[1], n[2])
data[0] = in_img_tensor
in_img_origin = torch.squeeze(in_img_origin) # 保存原图
data = Variable(data.cuda(0))
with torch.no_grad():
output = model(data) # 把图片输入模型处理
out = torch.reshape(output.cpu(), (n_class, n[1], n[2]))
pre = torch.max(out, 0)[1]
out_img_tensor = torch.zeros(3, n[1], n[2])
out_img_tensor[0, pre == 2] = 1
out_img_tensor[1, pre == 1] = 1
ratio = torch.sum(out_img_tensor[0]) / torch.sum(out_img_tensor)
if ratio > 0.3:
# out_img_tensor[0] += out_img_tensor[1]
# out_img_tensor[1] = 0
results = '恶性'
else:
# out_img_tensor[1] += out_img_tensor[0]
# out_img_tensor[0] = 0
results = '良性' # 判断良恶性
out_img_ndarray = cv.cvtColor(np.asarray(tensor2pil(out_img_tensor)),
cv.COLOR_RGB2BGR)
image_cv = cv.cvtColor(np.asarray(image), cv.COLOR_RGB2BGR)
out_img_ndarray = contours(out_img_ndarray, image_cv, results)
# =========================================
# for i in range(n[1]):
# for j in range(n[2]):
# if out_img_tensor[0, i, j] == 1 or out_img_tensor[1, i, j] == 1:
# in_img_origin[:, i, j] = 0
#
#
# out_img_tensor = in_img_origin + out_img_tensor
# ==========================================
path_filename = osp.split(path)
f_name = os.path.splitext(path_filename[1])[0]
filename = path_filename[1] # [0]表示file的路径, [1]表示文件
out_img_pil = Image.fromarray(
cv.cvtColor(out_img_ndarray, cv.COLOR_BGR2RGB))
fp = path_filename[0] + '/res/'
if not os.path.exists(fp):
os.mkdir(fp)
fp1 = fp + f_name + '.png'
fp2 = fp + 'tmp.png'
out_img_pil.save(fp1)
image.save(fp + 'tmp.png')
return fp1, fp2, results
def main():
model = nn.DataParallel(UNet(n_channels=4, n_classes=2, bilinear=True))
model.cuda()
model.load_state_dict(torch.load('best_model.pt'))
model.eval()
count = 0
for batch_idx, data in enumerate(test_loader):
img = data[0].cuda()
mask = data[1].cuda()
part_mask = data[2].cuda()
depth = data[3].cuda().float()
img_name = data[4][0]
input_data = torch.cat([img, depth], dim=1)
#print(input_data.shape)
#img = img * part_mask
cls = model(input_data).squeeze(dim=0)
#print(cls.shape)
cls_b = cls.cpu().detach().numpy()
#img = img.squeeze(dim=0).cpu().detach().numpy()
#cls_b = np.transpose(cls_b, (1,2,0))
#img = np.transpose(img, (2,1,0))
nameload = '../SIM_dataset_v10/rgb/' + test_dir[batch_idx]
real_img = cv2.imread(nameload)
real_img = cv2.cvtColor(real_img, cv2.COLOR_BGR2RGB)
img_h, img_w, img_c = real_img.shape
#print('W:',img_w)
#print('H:',img_h)
#real_img = cv2.warpAffine(real_img, cv2.getRotationMatrix2D((int(img_shape[1] / 2), int(img_shape[0]/ 2)), 180, 1),(img_shape[1], img_shape[0]))
#nf_array = np.zeros(320,200)
# print(cls_b.shape)
# exit()
#cv2.imwrite('report/' + img_name[0]+'.png', img)
for w in range(320):
for h in range(200):
#print(cls_b[h][w][0])
#print(cls_b[h][w][1])
if cls_b[0][w][h] < cls_b[1][w][h]:
print('yes')
#x,y = Transpose(w,h,0.625)
cv2.circle(real_img,
(int(w * img_w / 320), int(h * img_h / 200)),
13, [250, 0, 0], -1)
#cv2.circle(real_img, (int(w*w_img/320), int(h)), 13, [150,0,0], -1)
#cv2.circle(real_img, (0,0), 15, [0,0,150], -1)
#cv2.circle(real_img, (320,200), 15, [0,0,150],-1)
#cv2.circle(real_img, (640,400), 15, [0,0,150], -1)
#cv2.circle(real_img, (960, 600), 15, [0,0,150], -1)
#cv2.circle(real_img, (1280, 800), 15, [0,0,150], -1)
#cv2.circle(real_img, (1600, 1000), 15, [0,0,150], -1)
#cv2.circle(real_img, (1920, 1200), 15, [0,0,150], -1)
#real_img[3*h][3*w][2]=255
# else :
# img[3*h][3*w][0] = 0
# img[3 * h][3 * w][1] = 0
# img[3 * h][3 * w][2] = 0
st_name = img_name.split('/')
cv2.imwrite('report/' + st_name[len(st_name) - 1], real_img)
class Trainer(object):
def __init__(self, config, args):
self.args = args
self.config = config
# Define Dataloader
self.train_loader, self.val_loader, self.test_loader = make_data_loader(
config)
# Define network
#self.model = DeepLab(num_classes=self.nclass,
# backbone=config.backbone,
# output_stride=config.out_stride,
# sync_bn=config.sync_bn,
# freeze_bn=config.freeze_bn)
self.model = UNet(n_channels=1, n_classes=3, bilinear=True)
#train_params = [{'params': self.model.get_1x_lr_params(), 'lr': config.lr},
# {'params': self.model.get_10x_lr_params(), 'lr': config.lr * config.lr_ratio}]
# Define Optimizer
self.optimizer = torch.optim.SGD(self.model.parameters(),
lr=config.lr,
momentum=config.momentum,
weight_decay=config.weight_decay)
# Define Criterion
# whether to use class balanced weights
self.criterion = MSELoss(cuda=args.cuda)
# Define lr scheduler
self.scheduler = LR_Scheduler(config.lr_scheduler,
config.lr, config.epochs,
len(self.train_loader), config.lr_step,
config.warmup_epochs)
self.summary = TensorboardSummary('./train_log')
# Using cuda
if args.cuda:
self.model = torch.nn.DataParallel(self.model)
patch_replication_callback(self.model)
# cudnn.benchmark = True
self.model = self.model.cuda()
self.best_pred_source = 0.0
# Resuming checkpoint
if args.resume is not None:
if not os.path.isfile(args.resume):
raise RuntimeError("=> no checkpoint found at '{}'".format(
args.resume))
checkpoint = torch.load(args.resume)
if args.cuda:
self.model.module.load_state_dict(checkpoint)
else:
self.model.load_state_dict(checkpoint,
map_location=torch.device('cpu'))
print("=> loaded checkpoint '{}' (epoch {})".format(
args.resume, args.start_epoch))
def training(self, epoch):
train_loss = 0.0
self.model.train()
if config.freeze_bn:
self.model.module.freeze_bn()
tbar = tqdm(self.train_loader)
num_img_tr = len(self.train_loader)
for i, sample in enumerate(tbar):
itr = epoch * len(self.train_loader) + i
self.summary.writer.add_scalar(
'Train/lr', self.optimizer.param_groups[0]['lr'], itr)
A_image, A_target = sample['image'], sample['label']
if self.args.cuda:
A_image, A_target = A_image.cuda(), A_target.cuda()
self.scheduler(self.optimizer, i, epoch, self.best_pred_source, 0.,
self.config.lr_ratio)
A_output = self.model(A_image)
self.optimizer.zero_grad()
# Train seg network
# Supervised loss
#seg_loss = self.criterion(A_output, A_target)
main_loss = self.criterion(A_output, A_target)
main_loss.backward()
self.optimizer.step()
train_loss += main_loss.item()
self.summary.writer.add_scalar('Train/MSELoss', main_loss.item(),
itr)
tbar.set_description('Train loss: %.3f' % (train_loss / (i + 1)))
# Show the results of the last iteration
#if i == len(self.train_loader)-1:
print("Add Train images at epoch" + str(epoch))
self.summary.visualize_image('Train', self.config.dataset, A_image,
A_target, A_output, epoch, 5)
print('[Epoch: %d, numImages: %5d]' %
(epoch, i * self.config.batch_size + A_image.data.shape[0]))
print('Loss: %.3f' % train_loss)
def validation(self, epoch):
def get_metrics(tbar):
test_loss = 0.0
for i, sample in enumerate(tbar):
image, target = sample['image'], sample['label']
if self.args.cuda:
image, target = image.cuda(), target.cuda()
with torch.no_grad():
output = self.model(image)
loss = self.criterion(output, target)
test_loss += loss.item()
tbar.set_description('Test loss: %.3f' % (test_loss / (i + 1)))
pred = output.data.cpu().numpy()
target_ = target.cpu().numpy()
print("Add Validation-Source images at epoch" + str(epoch))
self.summary.visualize_image('Val', self.config.dataset, image,
target, output, epoch, 5)
print('Loss: %.3f' % test_loss)
return test_loss
self.model.eval()
tbar = tqdm(self.val_loader, desc='\r')
err = get_metrics(tbar)
new_pred_source = err
if new_pred_source > self.best_pred_source:
is_best = True
self.best_pred_source = max(new_pred_source, self.best_pred_source)
print('Saving state, epoch:', epoch)
torch.save(
self.model.module.state_dict(),
self.args.save_folder + 'models/' + 'epoch' + str(epoch) + '.pth')
loss_file = {'err': err}
with open(
os.path.join(self.args.save_folder, 'eval',
'epoch' + str(epoch) + '.json'), 'w') as f:
json.dump(loss_file, f)
# How many phases did we create databases for?
phases = ["train","val"]
# When should we do valiation? note that validation is time consuming, so as opposed to doing
# for both training and validation, we do it only for vlaidation at the end of the epoch
validation_phases= ["val"]
# Specify if we should use a GPU (cuda) or only the CPU
# The Totch device is where we allocate and manipulate a tensor. This is either
# the local CPU or a GPU.
print(torch.cuda.get_device_properties(gpuid))
torch.cuda.set_device(gpuid)
torchDevice = torch.device('cuda:'+str(gpuid) if torch.cuda.is_available() else 'cpu')
#torchDevice = torch.device('cpu')
# Build the UNetRuntime according to the paramters specified above and copy it to the GPU.
UNetRuntime = UNet(n_classes=n_classes, in_channels=in_channels, padding=padding, depth=depth, wf=wf, up_mode=up_mode, batch_norm=batch_norm).to(torchDevice)
# Print out the number of trainable parameters
params = sum([np.prod(p.size()) for p in UNetRuntime.parameters()])
print("total params: \t"+str(params))
################################################################################
# helper function for pretty printing of current time and remaining time
################################################################################
########################################
def asMinutes(s):
m = math.floor(s / 60)
s -= m * 60
return '%dm %ds' % (m, s)
def make_generator(self, generator_args: Dict):
return UNet(**generator_args)
def seg_wsi(args):
def normalize(data):
return data / data.max()
sampled_img_size = 256
# the border is single-side, e.g. [512,512] -> [528, 528]
border = 16
config = tf.ConfigProto()
config.gpu_options.allow_growth = True
sess = tf.Session(config=config)
K.set_session(sess)
# K.set_learning_phase(0)
img = tf.placeholder(tf.float32,
shape=(None, args.imSize, args.imSize,
args.input_channel))
model = UNet().create_model(img_shape=[opt.imSize, opt.imSize, 3],
num_class=opt.num_class,
rate=0.0,
input_tensor=preprocess_input(img))
unet_pred = tf.nn.softmax(model.output)
sess.run(tf.global_variables_initializer()) # initilize
try:
model.load_weights(args.load_from_checkpoint)
print("[*] Success to load model.")
except:
sys.exit("[*] Failed to find a checkpoint " +
args.load_from_checkpoint)
print("=> Starting WSI patch generation...")
wsi_filelist = []
wsi_filelist.extend(sorted(glob.glob(os.path.join(args.wsi_dir, '*.svs'))))
wsi_filelist.extend(sorted(glob.glob(os.path.join(args.wsi_dir,
'*.tiff'))))
# wsi_filelist = ['../../dataset/bladder/test_slides_small/104842_sub1_type1.tiff']
segmented_files = next(os.walk(args.res_dir))[1]
SlideHandler = SlideLoader(args.batch_size,
level=args.slide_level,
to_real_scale=4,
imsize=args.imSize)
print("=> Found {} whole slide images in total.".format(len(wsi_filelist)))
print("=> {} has been processed.".format(len(segmented_files)))
wsi_filelist = [
a for a in wsi_filelist
if os.path.splitext(os.path.basename(a))[0] not in segmented_files
]
print("=> {} is being processed.".format(len(wsi_filelist)))
end = min(args.end, len(wsi_filelist))
for index in range(args.start, end): # TODO remove this s
wsi_filepath = wsi_filelist[index]
wsi_img_name = os.path.splitext(os.path.basename(wsi_filepath))[0]
if os.path.isdir(os.path.join(args.res_dir, wsi_img_name)) or \
wsi_img_name in segmented_files:
continue
start_time = datetime.now()
print("=> Start {}/{} segment {}".format(index + 1, end, wsi_img_name))
# if wsi_img_name in ClearMarginPos.keys():
# crop_down_scale = int(ClearMarginPos[wsi_img_name][3])
# else:
crop_down_scale = 1
try:
slide_iterator, num_batches, slide_name, act_slide_size = SlideHandler.get_slide_iterator(
wsi_filepath, down_scale_rate=crop_down_scale, overlapp=512)
wsi_seg_results = np.zeros(act_slide_size, dtype=np.float16)
wsi_img_results = np.zeros(act_slide_size + [3], dtype=np.uint8)
wsi_mask = np.zeros(
act_slide_size, dtype=np.float16
) # used to average the overlapping region for border removing
candidates = []
with sess.as_default():
for step, (batch_imgs, locs) in enumerate(slide_iterator):
# locs[0]: (y, x)
sys.stdout.write('{}-{},'.format(step,
(batch_imgs.shape[0])))
sys.stdout.flush()
feed_dict = {img: batch_imgs, K.learning_phase(): False}
batch_pred = sess.run(unet_pred, feed_dict=feed_dict)
batch_logits = batch_pred[:, :, :, 1]
# put the results back to
for id, (seg, im, loc) in enumerate(
zip(batch_logits, batch_imgs, locs)):
y, x = loc[0], loc[1]
# there is overlapping
seg_h, seg_w = seg.shape
# prevent overflow, not happen useually
if seg_h + y > wsi_seg_results.shape[0]:
y = wsi_seg_results.shape[0] - seg_h
if seg_w + x > wsi_seg_results.shape[1]:
x = wsi_seg_results.shape[1] - seg_w
wsi_mask[y:y + seg_h,
x:x + seg_w] = wsi_mask[y:y + seg_h,
x:x + seg_w] + 1
## gradient average
# diff_mask = wsi_mask[y:y+seg_h, x:x+seg_w].copy()
# diff_mask[diff_mask < 2] = 0
# wsi_seg_results[y:y+seg_h, x:x+seg_w] = gradient_merge(wsi_seg_results[y:y+seg_h, x:x+seg_w], seg.astype(np.float16), diff_mask)
## simple average
# wsi_seg_results[y:y+seg_h, x:x+seg_w] = (wsi_seg_results[y:y+seg_h, x:x+seg_w] + seg.astype(np.float16)) / wsi_mask[y:y+seg_h, x:x+seg_w]
## maximum
wsi_seg_results[y:y + seg_h, x:x + seg_w] = np.maximum(
wsi_seg_results[y:y + seg_h, x:x + seg_w],
seg.astype(np.float16))
wsi_img_results[y:y + seg_h,
x:x + seg_w] = im.astype(np.uint8)
candidates.append([(y, x), seg.copy(), im.copy()])
# Saving segmentation and sampling results
cur_dir = os.path.join(args.res_dir,
os.path.splitext(wsi_img_name)[0])
if not os.path.exists(cur_dir):
# shutil.rmtree(cur_dir)
os.makedirs(cur_dir)
# Sample ROI randomly
sample_patches = patch_sampling(
candidates,
tot_samples=args.num_samples,
stride_ratio=0.01,
sample_size=[sampled_img_size, sampled_img_size],
threshold=args.threshold)
for idx in range(len(sample_patches)):
file_name_surfix = '_' + str(idx).zfill(5) + '_' + str(sample_patches[idx][0][0]).zfill(6) + \
'_' + str(sample_patches[idx][0][1]).zfill(6)
cur_patch_path = os.path.join(cur_dir,
wsi_img_name + file_name_surfix)
sample_img = (sample_patches[idx][1]).astype(np.uint8)
sample_seg = (normalize(sample_patches[idx][2]) *
255.0).astype(np.uint8)
misc.imsave(cur_patch_path + '.png',
sample_img) # only target images are png format
locs = [a[0] for a in sample_patches]
visualize_heatmap((wsi_seg_results * 255.0).astype(np.uint8),
shape=wsi_img_results.shape,
stride=sampled_img_size,
wsi_img=wsi_img_results,
save_path=os.path.join(cur_dir, wsi_img_name))
# thumb_img = gen_thumbnail(wsi_img_results, thumb_max=np.max(wsi_seg_results.shape))
misc.imsave(os.path.join(cur_dir, wsi_img_name + '_seg.jpg'),
misc.imresize(wsi_seg_results, 0.5).astype(np.uint8))
misc.imsave(os.path.join(cur_dir, wsi_img_name + '_thumb.jpg'),
misc.imresize(wsi_img_results, 0.5).astype(np.uint8))
wsi_img_point_results = visualize_sampling_points(wsi_img_results,
locs,
path=None)
misc.imsave(
os.path.join(cur_dir, wsi_img_name + '_samplepoint.jpg'),
misc.imresize(wsi_img_point_results, 0.5).astype(np.uint8))
elapsed_time = datetime.now() - start_time
print('=> Time {}'.format(elapsed_time))
except Exception as e:
print(e)
pass
raise SystemExit()
else:
out_files = output
return out_files
def mask_to_image(mask):
return Image.fromarray((mask * 255).astype(np.uint8))
if __name__ == "__main__":
in_files = pre_config.pre_img
out_files = get_output_filenames(pre_config.pre_img, pre_config.output)
net = UNet(n_channels=pre_config.channels, n_classes=1)
logging.info("Loading model {}".format(pre_config.model))
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
logging.info(f'Using device {device}')
net.to(device=device)
net.load_state_dict(torch.load(pre_config.model, map_location=device))
logging.info("Model loaded !")
for i, fn in enumerate(in_files):
logging.info("\nPredicting image {} ...".format(fn))
img = Image.open(fn)
if 'RIGHT' in fn:
def save_checkpoint(model, save_path):
if not os.path.exists(os.path.dirname(save_path)):
os.makedirs(os.path.dirname(save_path))
torch.save(model.state_dict(), save_path)
if single_gpu_flag(opt):
board = SummaryWriter(os.path.join('runs', opt.name))
prev_model = create_model(opt)
prev_model.cuda()
model = UNet(n_channels=4, n_classes=3)
if opt.distributed:
model = torch.nn.SyncBatchNorm.convert_sync_batchnorm(model)
model.apply(weights_init('kaiming'))
model.cuda()
if opt.use_gan:
discriminator = Discriminator()
discriminator.apply(utils.weights_init('gaussian'))
discriminator.cuda()
acc_discriminator = AccDiscriminator()
acc_discriminator.apply(utils.weights_init('gaussian'))
acc_discriminator.cuda()
if not opt.checkpoint == '' and os.path.exists(opt.checkpoint):
help='filenames of input images')
parser.add_argument('--output', '-o', metavar='INPUT', nargs='+',
help='filenames of ouput images')
parser.add_argument('--cpu', '-c', action='store_true',
help="Do not use the cuda version of the net",
default=False)
parser.add_argument('--viz', '-v', action='store_true',
help="Visualize the images as they are processed",
default=False)
parser.add_argument('--no-save', '-n', action='store_false',
help="Do not save the output masks",
default=False)
args = parser.parse_args()
print("Using model file : {}".format(args.model))
net = UNet(3, 3)
if not args.cpu:
print("Using CUDA version of the net, prepare your GPU !")
net.cuda()
else:
net.cpu()
print("Using CPU version of the net, this may be very slow")
#in_files = args.input
in_files = open('data/test.txt').readlines()
out_files = []
save_path = 'experiment/up1/predict/scnn_xaiver_out'
if not args.output:
for f in in_files:
pathsplit = os.path.splitext(f)
def main(args):
# parse args
best_acc1 = 0.0
# tensorboard writer
writer = SummaryWriter(args.experiment + "/logs")
if args.gpu >= 0:
print("Use GPU: {}".format(args.gpu))
else:
print('Using CPU for computing!')
fixed_random_seed = 2019
torch.manual_seed(fixed_random_seed)
np.random.seed(fixed_random_seed)
random.seed(fixed_random_seed)
# set up transforms for data augmentation
mn = [float(x) for x in args.mean] if(args.mean) else [0.485, 0.456, 0.406]
st = [float(x) for x in args.std] if(args.std) else [0.229, 0.224, 0.225]
normalize = transforms.Normalize(mean=mn, std=st)
train_transforms = get_train_transforms(normalize)
val_transforms = get_val_transforms(normalize)
if(args.train_denoiser):
normalize = transforms.Normalize(mean=mn, std=st)
train_transforms = get_denoiser_train_transforms(normalize)
val_transforms = get_denoiser_val_transforms(normalize)
elif(args.cub_training):
networks.CLASSES=200
normalize = transforms.Normalize(mean=mn, std=st)
train_transforms = get_cub_train_transforms(normalize)
val_transforms = get_cub_val_transforms(normalize)
if(args.spad_training):
networks.CLASSES=122
normalize = transforms.Normalize(mean=mn, std=st)
train_transforms = get_spad_train_transforms(normalize)
val_transforms = get_spad_val_transforms(normalize)
elif(args.cars_training):
networks.CLASSES=196
normalize = transforms.Normalize(mean=mn, std=st)
train_transforms = get_cub_train_transforms(normalize)
val_transforms = get_cub_val_transforms(normalize)
elif(args.imagenet_training):
networks.CLASSES=1000
normalize = transforms.Normalize(mean=mn, std=st)
train_transforms = get_imagenet_train_transforms(normalize)
val_transforms = get_imagenet_val_transforms(normalize)
if (not args.evaluate):
print("Training time data augmentations:")
print(train_transforms)
model_clean=None
model_teacher=None
if args.use_resnet18:
model = torchvision.models.resnet18(pretrained=False)
model.fc = nn.Linear(512, networks.CLASSES)
if(args.use_resnet18!="random"):
model.load_state_dict(torch.load(args.use_resnet18)['state_dict'])
elif args.use_resnet34:
model = torchvision.models.resnet34(pretrained=False)
model.fc = nn.Linear(512, networks.CLASSES)
elif args.use_resnet50:
model = torchvision.models.resnet50(pretrained=False)
model.fc = nn.Linear(2048, networks.CLASSES)
elif args.use_inception_v3:
model = torchvision.models.inception_v3(pretrained=False, aux_logits=False)
model.fc = nn.Linear(2048, networks.CLASSES)
elif args.use_photon_net:
model = networks.ResNetContrast(BasicBlock, [2, 2, 2, 2], networks.CLASSES)
if(args.use_photon_net!="random"):
model.load_state_dict(torch.load(args.use_photon_net)['state_dict'])
# elif args.use_contrastive_allfeats:
# model = networks.ResNetContrast2(BasicBlock, [2, 2, 2, 2], networks.CLASSES)
# if(args.use_contrastive_allfeats!="random"):
# model.load_state_dict(torch.load(args.use_contrastive_allfeats)['state_dict'])
elif args.train_denoiser:
model = UNet(3,3)
elif args.use_dirty_pixel:
model = torchvision.models.resnet18(pretrained=False)
model.fc = nn.Linear(512, networks.CLASSES)
model_clean = UNet(3,3)
if(args.evaluate==False):
model_clean.load_state_dict(torch.load(args.use_dirty_pixel)['state_dict'])
model_clean = model_clean.cuda(args.gpu)
elif args.use_student_teacher:
model = networks.ResNetPerceptual(BasicBlock, [2, 2, 2, 2], networks.CLASSES)
model_teacher = networks.ResNetPerceptual(BasicBlock, [2, 2, 2, 2], networks.CLASSES, teacher_model=True)
model_teacher.load_state_dict(torch.load(args.use_student_teacher)['state_dict'])
model_teacher = model_teacher.cuda(args.gpu)
model_teacher.eval()
for param in model_teacher.parameters():
param.requires_grad = False
else:
print("select correct model")
exit(0)
criterion1 = nn.CrossEntropyLoss()
if(args.use_student_teacher or args.train_denoiser or args.use_dirty_pixel):
criterion2 = nn.MSELoss()
else:
ps = AllPositivePairSelector(balance=False)
criterion2 = OnlineContrastiveLoss(1., ps)
# put everthing to gpu
if args.gpu >= 0:
model = model.cuda(args.gpu)
criterion1 = criterion1.cuda(args.gpu)
#criterion3 = criterion3.cuda(args.gpu)
criterion2 = criterion2.cuda(args.gpu)
criterion = [criterion1, criterion2]
#criterion = [criterion1]
# setup the optimizer
opt_params = model.parameters()
if(args.use_dirty_pixel):
opt_params = list(model.parameters()) + list(model_clean.parameters())
optimizer = torch.optim.SGD(opt_params, args.lr,
momentum=args.momentum,
weight_decay=args.weight_decay)
# resume from a checkpoint?
if args.resume:
if os.path.isfile(args.resume):
print("=> loading checkpoint '{}'".format(args.resume))
if(args.gpu>=0):
checkpoint = torch.load(args.resume)
else:
checkpoint = torch.load(args.resume, map_location=lambda storage, loc: storage)
#best_acc1 = checkpoint['best_acc1']
#new_state_dict = OrderedDict()
#model_dict = model.state_dict()
#for k, v in checkpoint['state_dict'].items():
# name = k[7:] # remove `module.`
# if(name.startswith('fc')):
# continue
# new_state_dict[name] = v
#model_dict.update(new_state_dict)
#model.load_state_dict(model_dict)
model.load_state_dict(checkpoint['state_dict'])
if args.gpu < 0:
model = model.cpu()
else:
model = model.cuda(args.gpu)
if(args.use_dirty_pixel):
model_clean.load_state_dict(checkpoint['model_clean_state_dict'])
model_clean = model_clean.cuda(args.gpu)
# # only load the optimizer if necessary
# if (not args.evaluate):
# args.start_epoch = checkpoint['epoch']
# optimizer.load_state_dict(checkpoint['optimizer'])
print("=> loaded checkpoint '{}' (epoch {}, acc1 {})"
.format(args.resume, checkpoint['epoch'], best_acc1))
else:
print("=> no checkpoint found at '{}'".format(args.resume))
# setup dataset and dataloader
val_dataset = IMMetricLoader(args.data_folder,
split='val', transforms=val_transforms, image_id=False, pil_loader=args.pil_loader, clean_image=args.train_denoiser, label_file=args.val_label_file)
print('Validation Set Size: ', len(val_dataset))
val_batch_size = 1 if args.train_denoiser else 50
val_loader = torch.utils.data.DataLoader(
val_dataset, batch_size=val_batch_size, shuffle=False,
num_workers=args.workers, pin_memory=True, sampler=None, drop_last=False)
val_dataset.reset_seed()
# evaluation
if args.evaluate:
print("Testing the model ...")
cudnn.deterministic = True
validate_model(val_loader, model, -1, args, writer, model_clean)
return
load_clean_image = args.use_student_teacher or args.train_denoiser or args.use_dirty_pixel
train_dataset = IMMetricLoader(args.data_folder,
split='train', transforms=train_transforms, label_file=args.label_file, pil_loader=args.pil_loader, clean_image=load_clean_image)
print('Training Set Size: ', len(train_dataset))
if(args.num_instances):
train_loader = torch.utils.data.DataLoader(
train_dataset, batch_size=args.batch_size,
num_workers=args.workers, pin_memory=True, sampler=RandomIdentitySampler(train_dataset, num_instances=args.num_instances), drop_last=True)
else:
train_loader = torch.utils.data.DataLoader(
train_dataset, batch_size=args.batch_size, shuffle=True,
num_workers=args.workers, pin_memory=True, sampler=None, drop_last=True)
# enable cudnn benchmark
cudnn.enabled = True
cudnn.benchmark = True
if(args.train_denoiser):
print("Training denoiser ...")
for epoch in range(args.start_epoch, args.epochs):
train_dataset.reset_seed()
train_denoiser(train_loader, val_loader, model, criterion, optimizer, epoch, args, writer)
return
model.eval()
top1 = AverageMeter()
top5 = AverageMeter()
val_acc1 = validate_model(val_loader, model, 0, args, writer, model_clean)
writer.add_scalars('data/top1_accuracy',
{"train" : top1.avg}, 0)
writer.add_scalars('data/top5_accuracy',
{"train" : top5.avg}, 0)
model.train()
# warmup the training
if (args.start_epoch == 0) and (args.warmup_epochs > 0):
print("Warmup the training ...")
for epoch in range(0, args.warmup_epochs):
acc1 = train_model(train_loader, val_loader, model, criterion, optimizer, epoch, "warmup", best_acc1, args, writer, model_clean, model_teacher)
# start the training
print("Training the model ...")
for epoch in range(args.start_epoch, args.epochs):
train_dataset.reset_seed()
# train for one epoch
acc1 = train_model(train_loader, val_loader, model, criterion, optimizer, epoch, "train", best_acc1, args, writer, model_clean, model_teacher)
# save checkpoint
best_acc1 = max(acc1, best_acc1)
# We do not expect these to be non-zero for an accurate mask,
# so this should not harm the score.
pixels[0] = 0
pixels[-1] = 0
runs = np.where(pixels[1:] != pixels[:-1])[0] + 2
runs[1::2] = runs[1::2] - runs[:-1:2]
return runs
def submit(net):
"""Used for Kaggle submission: predicts and encode all test images"""
dir = 'data/test/'
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
N = len(list(os.listdir(dir)))
with open('SUBMISSION.csv', 'a') as f:
f.write('img,rle_mask\n')
for index, i in enumerate(os.listdir(dir)):
print('{}/{}'.format(index, N))
img = Image.open(dir + i)
mask = predict_img(net, img, device)
enc = rle_encode(mask)
f.write('{},{}\n'.format(i, ' '.join(map(str, enc))))
if __name__ == '__main__':
net = UNet(3, 1).cuda()
net.load_state_dict(torch.load('MODEL.pth'))
submit(net)
class Noise2Noise(object):
"""Implementation of Noise2Noise from Lehtinen et al. (2018)."""
def __init__(self, params, trainable):
"""Initializes model."""
self.p = params
self.trainable = trainable
self._compile()
def _compile(self):
"""Compiles model (architecture, loss function, optimizers, etc.)."""
print('Noise2Noise: Learning Image Restoration without Clean Data (Lethinen et al., 2018)')
# Model (3x3=9 channels for Monte Carlo since it uses 3 HDR buffers)
if self.p.noise_type == 'mc':
self.is_mc = True
self.model = UNet(in_channels=9)
else:
self.is_mc = False
self.model = UNet(in_channels=3)
# Set optimizer and loss, if in training mode
if self.trainable:
self.optim = Adam(self.model.parameters(),
lr=self.p.learning_rate,
betas=self.p.adam[:2],
eps=self.p.adam[2])
# Learning rate adjustment
self.scheduler = lr_scheduler.ReduceLROnPlateau(self.optim,
patience=self.p.nb_epochs/4, factor=0.5, verbose=True)
# Loss function
if self.p.loss == 'hdr':
assert self.is_mc, 'Using HDR loss on non Monte Carlo images'
self.loss = HDRLoss()
elif self.p.loss == 'l2':
self.loss = nn.MSELoss()
else:
self.loss = nn.L1Loss()
# CUDA support
self.use_cuda = torch.cuda.is_available() and self.p.cuda
if self.use_cuda:
self.model = self.model.cuda()
if self.trainable:
self.loss = self.loss.cuda()
def _print_params(self):
"""Formats parameters to print when training."""
print('Training parameters: ')
self.p.cuda = self.use_cuda
param_dict = vars(self.p)
pretty = lambda x: x.replace('_', ' ').capitalize()
print('\n'.join(' {} = {}'.format(pretty(k), str(v)) for k, v in param_dict.items()))
print()
def save_model(self, epoch, stats, first=False):
"""Saves model to files; can be overwritten at every epoch to save disk space."""
# Create directory for model checkpoints, if nonexistent
if first:
if self.p.clean_targets:
ckpt_dir_name = f'{datetime.now():{self.p.noise_type}-clean-%H%M}'
else:
ckpt_dir_name = f'{datetime.now():{self.p.noise_type}-%H%M}'
if self.p.ckpt_overwrite:
if self.p.clean_targets:
ckpt_dir_name = f'{self.p.noise_type}-clean'
else:
ckpt_dir_name = self.p.noise_type
self.ckpt_dir = os.path.join(self.p.ckpt_save_path, ckpt_dir_name)
if not os.path.isdir(self.p.ckpt_save_path):
os.mkdir(self.p.ckpt_save_path)
if not os.path.isdir(self.ckpt_dir):
os.mkdir(self.ckpt_dir)
# Save checkpoint dictionary
if self.p.ckpt_overwrite:
fname_unet = '{}/n2n-{}.pt'.format(self.ckpt_dir, self.p.noise_type)
else:
valid_loss = stats['valid_loss'][epoch]
fname_unet = '{}/n2n-epoch{}-{:>1.5f}.pt'.format(self.ckpt_dir, epoch + 1, valid_loss)
print('Saving checkpoint to: {}\n'.format(fname_unet))
torch.save(self.model.state_dict(), fname_unet)
# Save stats to JSON
fname_dict = '{}/n2n-stats.json'.format(self.ckpt_dir)
with open(fname_dict, 'w') as fp:
json.dump(stats, fp, indent=2)
def load_model(self, ckpt_fname):
"""Loads model from checkpoint file."""
print('Loading checkpoint from: {}'.format(ckpt_fname))
if self.use_cuda:
self.model.load_state_dict(torch.load(ckpt_fname))
else:
self.model.load_state_dict(torch.load(ckpt_fname, map_location='cpu'))
def _on_epoch_end(self, stats, train_loss, epoch, epoch_start, valid_loader):
"""Tracks and saves starts after each epoch."""
# Evaluate model on validation set
print('\rTesting model on validation set... ', end='')
epoch_time = time_elapsed_since(epoch_start)[0]
valid_loss, valid_time, valid_psnr = self.eval(valid_loader)
show_on_epoch_end(epoch_time, valid_time, valid_loss, valid_psnr)
# Decrease learning rate if plateau
self.scheduler.step(valid_loss)
# Save checkpoint
stats['train_loss'].append(train_loss)
stats['valid_loss'].append(valid_loss)
stats['valid_psnr'].append(valid_psnr)
self.save_model(epoch, stats, epoch == 0)
# Plot stats
if self.p.plot_stats:
loss_str = f'{self.p.loss.upper()} loss'
plot_per_epoch(self.ckpt_dir, 'Valid loss', stats['valid_loss'], loss_str)
plot_per_epoch(self.ckpt_dir, 'Valid PSNR', stats['valid_psnr'], 'PSNR (dB)')
def test(self, test_loader, show):
"""Evaluates denoiser on test set."""
self.model.train(False)
source_imgs = []
denoised_imgs = []
clean_imgs = []
# Create directory for denoised images
denoised_dir = os.path.dirname(self.p.data)
save_path = os.path.join(denoised_dir, 'denoised')
if not os.path.isdir(save_path):
os.mkdir(save_path)
for batch_idx, (source, target) in enumerate(test_loader):
# Only do first <show> images
if show == 0 or batch_idx >= show:
break
source_imgs.append(source)
clean_imgs.append(target)
if self.use_cuda:
source = source.cuda()
# Denoise
denoised_img = self.model(source).detach()
denoised_imgs.append(denoised_img)
# Squeeze tensors
source_imgs = [t.squeeze(0) for t in source_imgs]
denoised_imgs = [t.squeeze(0) for t in denoised_imgs]
clean_imgs = [t.squeeze(0) for t in clean_imgs]
# Create montage and save images
print('Saving images and montages to: {}'.format(save_path))
for i in range(len(source_imgs)):
img_name = test_loader.dataset.imgs[i]
create_montage(img_name, self.p.noise_type, save_path, source_imgs[i], denoised_imgs[i], clean_imgs[i], show)
#ÕûͼÊä³ö
def test2(self):
"""Evaluates denoiser on test set."""
self.model.train(False)
# Create directory for denoised images
denoised_dir = os.path.dirname(self.p.data)
save_path = os.path.join(denoised_dir, 'denoised')
if not os.path.isdir(save_path):
os.mkdir(save_path)
namelist = os.listdir(denoised_dir)
filelist=[os.path.join(denoised_dir,name) for name in namelist if (name != "denoised")]
# Load PIL image
for img_path in filelist:
img = Image.open(img_path).convert('RGB')
w, h = img.size
if w % 32 != 0:
w = (w//32)*32
if h % 32 != 0:
h = (h//32)*32
img = tvF.crop(img, 0, 0, h, w)
source = tvF.to_tensor(img)
source = source.unsqueeze(0)
print(source.size())
if self.use_cuda:
source = source.cuda()
# Denoise
denoised = self.model(source).detach()
denoised = denoised.cpu()
denoised = denoised.squeeze(0)
print("--------->",denoised.size())
denoised = tvF.to_pil_image(denoised)
fname = os.path.basename(img_path)
denoised.save(os.path.join(save_path, f'{fname}-denoised.png'))
def eval(self, valid_loader):
"""Evaluates denoiser on validation set."""
self.model.train(False)
valid_start = datetime.now()
loss_meter = AvgMeter()
psnr_meter = AvgMeter()
for batch_idx, (source, target) in enumerate(valid_loader):
if self.use_cuda:
source = source.cuda()
target = target.cuda()
# Denoise
source_denoised = self.model(source)
# Update loss
loss = self.loss(source_denoised, target)
loss_meter.update(loss.item())
# Compute PSRN
if self.is_mc:
source_denoised = reinhard_tonemap(source_denoised)
# TODO: Find a way to offload to GPU, and deal with uneven batch sizes
for i in range(self.p.batch_size):
source_denoised = source_denoised.cpu()
target = target.cpu()
psnr_meter.update(psnr(source_denoised[i], target[i]).item())
valid_loss = loss_meter.avg
valid_time = time_elapsed_since(valid_start)[0]
psnr_avg = psnr_meter.avg
return valid_loss, valid_time, psnr_avg
def train(self, train_loader, valid_loader):
"""Trains denoiser on training set."""
self.model.train(True)
self._print_params()
num_batches = len(train_loader)
if self.p.report_interval == 0:
self.p.report_interval = num_batches
print("--------->num_batches:",num_batches)
print("--------->report_interval:",self.p.report_interval)
assert num_batches % self.p.report_interval == 0, 'Report interval must divide total number of batches'
# Dictionaries of tracked stats
stats = {'noise_type': self.p.noise_type,
'noise_param': self.p.noise_param,
'train_loss': [],
'valid_loss': [],
'valid_psnr': []}
# Main training loop
train_start = datetime.now()
for epoch in range(self.p.nb_epochs):
print('EPOCH {:d} / {:d}'.format(epoch + 1, self.p.nb_epochs))
# Some stats trackers
epoch_start = datetime.now()
train_loss_meter = AvgMeter()
loss_meter = AvgMeter()
time_meter = AvgMeter()
# Minibatch SGD
for batch_idx, (source, target) in enumerate(train_loader):
batch_start = datetime.now()
progress_bar(batch_idx, num_batches, self.p.report_interval, loss_meter.val)
if self.use_cuda:
source = source.cuda()
target = target.cuda()
# Denoise image
source_denoised = self.model(source)
loss = self.loss(source_denoised, target)
loss_meter.update(loss.item())
# Zero gradients, perform a backward pass, and update the weights
self.optim.zero_grad()
loss.backward()
self.optim.step()
# Report/update statistics
time_meter.update(time_elapsed_since(batch_start)[1])
if (batch_idx + 1) % self.p.report_interval == 0 and batch_idx:
show_on_report(batch_idx, num_batches, loss_meter.avg, time_meter.avg)
train_loss_meter.update(loss_meter.avg)
loss_meter.reset()
time_meter.reset()
# Epoch end, save and reset tracker
self._on_epoch_end(stats, train_loss_meter.avg, epoch, epoch_start, valid_loader)
train_loss_meter.reset()
train_elapsed = time_elapsed_since(train_start)[0]
print('Training done! Total elapsed time: {}\n'.format(train_elapsed))
dataset_dir = 'parking/'
batch_size = 1
transform = transforms.Compose([
transforms.ToTensor(),
transforms.Normalize((0.5, 0.5, 0.5), (0.5, 0.5, 0.5))])
trainset = parking_data(root=dataset_dir, l=0.05, is_train=False, transform=transform)
trainloader = torch.utils.data.DataLoader(trainset, batch_size=batch_size, shuffle=True, num_workers=0)
# using GPU
device = torch.device("cuda:0" if torch.cuda.is_available() else "cpu")
print(device)
net = UNet(n_channels=1, n_classes=1)
net = net.to(device)
net.load_state_dict(torch.load('./unet/ckpt/parking_unet_model_epoch40.pth'))
net.eval()
dummy = net(torch.zeros(1,1,320,320).to(device))
############## Character Recognition ##############
# Initialize the network
global_step = tf.Variable(0, trainable=False)
logits, input_plate, seq_len = get_train_model(num_channels, label_len, BATCH_SIZE, img_size)
logits = tf.transpose(logits, (1, 0, 2))
decoded, log_prob = tf.nn.ctc_beam_search_decoder(logits, seq_len, merge_repeated=False)
session = tf.Session()
init = tf.global_variables_initializer()
val_loader = DataLoader(val_set,
batch_size=args.batchsize,
shuffle=False,
num_workers=args.num_workers)
test_set = data_loader(img_tests,
transform=data_transforms['val'],
APS=args.APS,
isTrain=False)
print('Number of test patches extracted: ', len(test_set))
test_loader = DataLoader(test_set,
batch_size=args.batchsize,
shuffle=False,
num_workers=args.num_workers)
net = UNet(n_channels=3, n_classes=args.n_classes, bilinear=False)
if args.gpu:
net.cuda()
net = torch.nn.DataParallel(net, device_ids=[0, 1])
cudnn.benchmark = True # faster convolutions, but more memory
try:
train_net(net=net,
train_loader=train_loader,
val_loader=val_loader,
test_loader=test_loader,
args=args)
except KeyboardInterrupt:
torch.save(net.state_dict(),
'INTERRUPTED_res{}.pth'.format(args.resolution))
# true_mask = torch.from_numpy(true_mask)
mask_pred = net(img.cuda())[0]
mask_pred = mask_pred.data.cpu().numpy()
mask_pred = (mask_pred > 0.5).astype(int)
#
# print('mask_pred.shape.zhaojin', mask_pred.shape)
# print('true_mask.shape.zhaojin', true_mask.shape)
tot += dice_cofe(mask_pred, true_mask)
return tot / (i + 1)
if __name__ == "__main__":
dir_img = '/home/zhaojin/data/TacomaBridge/segdata/train/img'
dir_mask = '/home/zhaojin/data/TacomaBridge/segdata/train/mask'
dir_checkpoint = '/home/zhaojin/data/TacomaBridge/segdata/train/checkpoint/logloss_softmax/'
net = UNet(n_channels=1, n_classes=4)
net = net.cuda()
ids = get_ids(dir_img)
ids = split_ids(ids)
iddataset = split_train_val(ids, 0.1)
val = get_imgs_and_masks(iddataset['val'], dir_img, dir_mask, 0.5)
if 1:
val_dice = eval_net(net, val)
print('Validation Dice Coeff: {}'.format(val_dice))
def save_ckp(state):
f_path = "/media/disk2/sombit/kitti_seg/checkpoint.pt"
torch.save(state, f_path)
def load_ckp(checkpoint_fpath, model, optimizer):
checkpoint = torch.load(checkpoint_fpath)
model.load_state_dict(checkpoint['state_dict'])
optim.load_state_dict(checkpoint['optimizer'])
return model, optim, checkpoint['epoch']
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
print(device)
model = UNet(padding=True, up_mode='upsample').to(device)
print("Load Model")
optim = torch.optim.Adam(model.parameters())
# data_loader = get_loader('kitti','seg')
# data_path = "/home/sombit/kitti"
t_loader = data_loader(
is_transform=True,
img_norm=False,
)
trainloader = data.DataLoader(t_loader,
batch_size=1,
num_workers=2,
shuffle=True)
epochs = 100
print("Error : Input files and output files are not of the same length")
raise SystemExit()
else:
out_files = args.output
return out_files
def mask_to_image(mask):
return Image.fromarray((mask * 255).astype(np.uint8))
if __name__ == "__main__":
args = get_args()
in_files = args.input
out_files = get_output_filenames(args)
net = UNet(n_channels=3, n_classes=1)
print("Loading model {}".format(args.model))
if not args.cpu:
print("Using CUDA version of the net, prepare your GPU !")
net.cuda()
net.load_state_dict(torch.load(args.model))
else:
net.cpu()
net.load_state_dict(torch.load(args.model, map_location='cpu'))
print("Using CPU version of the net, this may be very slow")
print("Model loaded !")
for i, fn in enumerate(in_files):
args = edict()
args.epochs = cfg.ARGS.EPOCHS
args.batchsize = cfg.ARGS.BATCH_SIZE
args.lr = cfg.ARGS.LR
args.load_pth = cfg.ARGS.LOAD_PTH
args.expname = opt.config.replace('.yml', '')
args.scale = cfg.EXP.SCALE
args.colormap = cfg.EXP.COLORMAP
logging.basicConfig(level=logging.INFO,
format='%(levelname)s: %(message)s')
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
logging.info(f'Using device {device}')
net = UNet(n_channels=3, n_classes=2)
logging.info(
f'Network:\n'
f'\t{net.n_channels} input channels\n'
f'\t{net.n_classes} output channels (classes)\n'
f'\t{"Bilinear" if net.bilinear else "Dilated conv"} upscaling')
if args.load_pth:
net.load_state_dict(torch.load(args.load_pth, map_location=device))
logging.info(f'Model loaded from {args.load_pth}')
net.to(device=device)
try:
train_net(net=net,
epochs=args.epochs,
default=False, help='load file model')
parser.add_option('-s', '--scale', dest='scale', type='float',
default=0.5, help='downscaling factor of the images')
parser.add_option('-t', '--height', dest='height', type='int',
default=1024, help='rescale images to height')
(options, args) = parser.parse_args()
return options
if __name__ == '__main__':
print("Let's record it \n")
args = get_args()
net = UNet(n_channels=3, n_classes=1)
net = torch.nn.DataParallel(net)
if args.load:
net.load_state_dict(torch.load(args.load))
print('Model loaded from {}'.format(args.load))
if args.gpu:
net.cuda()
cudnn.benchmark = True # faster convolutions, but more memory
try:
train_net(net=net,
epochs=args.epochs,
batch_size=args.batchsize,
lr=args.lr,
def main():
opt = get_opt()
print(opt)
print("Start to train stage: %s, named: %s!" % (opt.stage, opt.name))
n_gpu = int(os.environ['WORLD_SIZE']) if 'WORLD_SIZE' in os.environ else 1
opt.distributed = n_gpu > 1
local_rank = opt.local_rank
if opt.distributed:
torch.cuda.set_device(opt.local_rank)
torch.distributed.init_process_group(backend='nccl',
init_method='env://')
synchronize()
# create dataset
train_dataset = CPDataset(opt)
# create dataloader
train_loader = CPDataLoader(opt, train_dataset)
# visualization
if not os.path.exists(opt.tensorboard_dir):
os.makedirs(opt.tensorboard_dir)
board = None
if single_gpu_flag(opt):
board = SummaryWriter(
log_dir=os.path.join(opt.tensorboard_dir, opt.name))
# create model & train & save the final checkpoint
if opt.stage == 'GMM':
model = GMM(opt)
if not opt.checkpoint == '' and os.path.exists(opt.checkpoint):
load_checkpoint(model, opt.checkpoint)
train_gmm(opt, train_loader, model, board)
save_checkpoint(
model, os.path.join(opt.checkpoint_dir, opt.name, 'gmm_final.pth'))
elif opt.stage == 'TOM':
gmm_model = GMM(opt)
load_checkpoint(gmm_model, "checkpoints/gmm_train_new/step_020000.pth")
gmm_model.cuda()
model = UnetGenerator(25, 4, 6, ngf=64, norm_layer=nn.InstanceNorm2d)
model.cuda()
# if opt.distributed:
# model = torch.nn.SyncBatchNorm.convert_sync_batchnorm(model)
if not opt.checkpoint == '' and os.path.exists(opt.checkpoint):
load_checkpoint(model, opt.checkpoint)
model_module = model
if opt.distributed:
model = torch.nn.parallel.DistributedDataParallel(
model,
device_ids=[local_rank],
output_device=local_rank,
find_unused_parameters=True)
model_module = model.module
train_tom(opt, train_loader, model, model_module, gmm_model, board)
if single_gpu_flag(opt):
save_checkpoint(
model_module,
os.path.join(opt.checkpoint_dir, opt.name, 'tom_final.pth'))
elif opt.stage == 'TOM+WARP':
gmm_model = GMM(opt)
gmm_model.cuda()
model = UnetGenerator(25, 4, 6, ngf=64, norm_layer=nn.InstanceNorm2d)
model.cuda()
# if opt.distributed:
# model = torch.nn.SyncBatchNorm.convert_sync_batchnorm(model)
if not opt.checkpoint == '' and os.path.exists(opt.checkpoint):
load_checkpoint(model, opt.checkpoint)
model_module = model
gmm_model_module = gmm_model
if opt.distributed:
model = torch.nn.parallel.DistributedDataParallel(
model,
device_ids=[local_rank],
output_device=local_rank,
find_unused_parameters=True)
model_module = model.module
gmm_model = torch.nn.parallel.DistributedDataParallel(
gmm_model,
device_ids=[local_rank],
output_device=local_rank,
find_unused_parameters=True)
gmm_model_module = gmm_model.module
train_tom_gmm(opt, train_loader, model, model_module, gmm_model,
gmm_model_module, board)
if single_gpu_flag(opt):
save_checkpoint(
model_module,
os.path.join(opt.checkpoint_dir, opt.name, 'tom_final.pth'))
elif opt.stage == "identity":
model = Embedder()
if not opt.checkpoint == '' and os.path.exists(opt.checkpoint):
load_checkpoint(model, opt.checkpoint)
train_identity_embedding(opt, train_loader, model, board)
save_checkpoint(
model, os.path.join(opt.checkpoint_dir, opt.name, 'gmm_final.pth'))
elif opt.stage == 'residual':
gmm_model = GMM(opt)
load_checkpoint(gmm_model, "checkpoints/gmm_train_new/step_020000.pth")
gmm_model.cuda()
generator_model = UnetGenerator(25,
4,
6,
ngf=64,
norm_layer=nn.InstanceNorm2d)
load_checkpoint(generator_model,
"checkpoints/tom_train_new/step_038000.pth")
generator_model.cuda()
embedder_model = Embedder()
load_checkpoint(embedder_model,
"checkpoints/identity_train_64_dim/step_020000.pth")
embedder_model = embedder_model.embedder_b.cuda()
model = UNet(n_channels=4, n_classes=3)
if opt.distributed:
model = torch.nn.SyncBatchNorm.convert_sync_batchnorm(model)
model.apply(utils.weights_init('kaiming'))
model.cuda()
if opt.use_gan:
discriminator = Discriminator()
discriminator.apply(utils.weights_init('gaussian'))
discriminator.cuda()
acc_discriminator = AccDiscriminator()
acc_discriminator.apply(utils.weights_init('gaussian'))
acc_discriminator.cuda()
if not opt.checkpoint == '' and os.path.exists(opt.checkpoint):
load_checkpoint(model, opt.checkpoint)
if opt.use_gan:
load_checkpoint(discriminator,
opt.checkpoint.replace("step_", "step_disc_"))
model_module = model
if opt.use_gan:
discriminator_module = discriminator
acc_discriminator_module = acc_discriminator
if opt.distributed:
model = torch.nn.parallel.DistributedDataParallel(
model,
device_ids=[local_rank],
output_device=local_rank,
find_unused_parameters=True)
model_module = model.module
if opt.use_gan:
discriminator = torch.nn.parallel.DistributedDataParallel(
discriminator,
device_ids=[local_rank],
output_device=local_rank,
find_unused_parameters=True)
discriminator_module = discriminator.module
acc_discriminator = torch.nn.parallel.DistributedDataParallel(
acc_discriminator,
device_ids=[local_rank],
output_device=local_rank,
find_unused_parameters=True)
acc_discriminator_module = acc_discriminator.module
if opt.use_gan:
train_residual(opt,
train_loader,
model,
model_module,
gmm_model,
generator_model,
embedder_model,
board,
discriminator=discriminator,
discriminator_module=discriminator_module,
acc_discriminator=acc_discriminator,
acc_discriminator_module=acc_discriminator_module)
if single_gpu_flag(opt):
save_checkpoint(
{
"generator": model_module,
"discriminator": discriminator_module
},
os.path.join(opt.checkpoint_dir, opt.name,
'tom_final.pth'))
else:
train_residual(opt, train_loader, model, model_module, gmm_model,
generator_model, embedder_model, board)
if single_gpu_flag(opt):
save_checkpoint(
model_module,
os.path.join(opt.checkpoint_dir, opt.name,
'tom_final.pth'))
elif opt.stage == "residual_old":
gmm_model = GMM(opt)
load_checkpoint(gmm_model, "checkpoints/gmm_train_new/step_020000.pth")
gmm_model.cuda()
generator_model = UnetGenerator(25,
4,
6,
ngf=64,
norm_layer=nn.InstanceNorm2d)
load_checkpoint(generator_model,
"checkpoints/tom_train_new_2/step_070000.pth")
generator_model.cuda()
embedder_model = Embedder()
load_checkpoint(embedder_model,
"checkpoints/identity_train_64_dim/step_020000.pth")
embedder_model = embedder_model.embedder_b.cuda()
model = UNet(n_channels=4, n_classes=3)
if opt.distributed:
model = torch.nn.SyncBatchNorm.convert_sync_batchnorm(model)
model.apply(utils.weights_init('kaiming'))
model.cuda()
if opt.use_gan:
discriminator = Discriminator()
discriminator.apply(utils.weights_init('gaussian'))
discriminator.cuda()
if not opt.checkpoint == '' and os.path.exists(opt.checkpoint):
load_checkpoint(model, opt.checkpoint)
model_module = model
if opt.use_gan:
discriminator_module = discriminator
if opt.distributed:
model = torch.nn.parallel.DistributedDataParallel(
model,
device_ids=[local_rank],
output_device=local_rank,
find_unused_parameters=True)
model_module = model.module
if opt.use_gan:
discriminator = torch.nn.parallel.DistributedDataParallel(
discriminator,
device_ids=[local_rank],
output_device=local_rank,
find_unused_parameters=True)
discriminator_module = discriminator.module
if opt.use_gan:
train_residual_old(opt,
train_loader,
model,
model_module,
gmm_model,
generator_model,
embedder_model,
board,
discriminator=discriminator,
discriminator_module=discriminator_module)
if single_gpu_flag(opt):
save_checkpoint(
{
"generator": model_module,
"discriminator": discriminator_module
},
os.path.join(opt.checkpoint_dir, opt.name,
'tom_final.pth'))
else:
train_residual_old(opt, train_loader, model, model_module,
gmm_model, generator_model, embedder_model,
board)
if single_gpu_flag(opt):
save_checkpoint(
model_module,
os.path.join(opt.checkpoint_dir, opt.name,
'tom_final.pth'))
else:
raise NotImplementedError('Model [%s] is not implemented' % opt.stage)
print('Finished training %s, nameed: %s!' % (opt.stage, opt.name))
cuda = opt.cuda
if cuda and not torch.cuda.is_available():
raise Exception("No GPU found, please run without --cuda")
torch.manual_seed(opt.seed)
if cuda:
torch.cuda.manual_seed(opt.seed)
print('===> Loading datasets')
train_set = get_training_set(opt.size + opt.remsize, target_mode=opt.target_mode, colordim=opt.colordim)
test_set = get_test_set(opt.size, target_mode=opt.target_mode, colordim=opt.colordim)
training_data_loader = DataLoader(dataset=train_set, num_workers=opt.threads, batch_size=opt.batchSize, shuffle=True)
testing_data_loader = DataLoader(dataset=test_set, num_workers=opt.threads, batch_size=opt.testBatchSize, shuffle=False)
print('===> Building unet')
unet = UNet(opt.colordim)
criterion = nn.MSELoss()
if cuda:
unet = unet.cuda()
criterion = criterion.cuda()
pretrained = True
if pretrained:
unet.load_state_dict(torch.load(opt.pretrain_net))
optimizer = optim.SGD(unet.parameters(), lr=opt.lr)
print('===> Training unet')
def train(epoch):
def make_discriminator(self, discriminator_args: Dict):
return ScoreWrapper(UNet(**discriminator_args))