def train(server=None):
r'''
Trains the network on a given server of a cluster.
If no server provided, it performs single process training.
'''
# Initializing and starting the training coordinator
coord = TrainingCoordinator(Config.is_chief)
coord.start()
# Create a variable to hold the global_step.
# It will automagically get incremented by the optimizer.
global_step = tf.Variable(0, trainable=False, name='global_step')
dropout_rates = [tf.placeholder(tf.float32, name='dropout_{}'.format(i)) for i in range(6)]
# Reading training set
train_data = preprocess(FLAGS.train_files.split(','),
FLAGS.train_batch_size,
Config.n_input,
Config.n_context,
Config.alphabet,
hdf5_cache_path=FLAGS.train_cached_features_path)
train_set = DataSet(train_data,
FLAGS.train_batch_size,
limit=FLAGS.limit_train,
next_index=lambda i: coord.get_next_index('train'))
# Reading validation set
dev_data = preprocess(FLAGS.dev_files.split(','),
FLAGS.dev_batch_size,
Config.n_input,
Config.n_context,
Config.alphabet,
hdf5_cache_path=FLAGS.dev_cached_features_path)
dev_set = DataSet(dev_data,
FLAGS.dev_batch_size,
limit=FLAGS.limit_dev,
next_index=lambda i: coord.get_next_index('dev'))
# Combining all sets to a multi set model feeder
model_feeder = ModelFeeder(train_set,
dev_set,
Config.n_input,
Config.n_context,
Config.alphabet,
tower_feeder_count=len(Config.available_devices))
# Create the optimizer
optimizer = create_optimizer()
# Synchronous distributed training is facilitated by a special proxy-optimizer
if not server is None:
optimizer = tf.train.SyncReplicasOptimizer(optimizer,
replicas_to_aggregate=FLAGS.replicas_to_agg,
total_num_replicas=FLAGS.replicas)
# Get the data_set specific graph end-points
gradients, loss = get_tower_results(model_feeder, optimizer, dropout_rates)
# Average tower gradients across GPUs
avg_tower_gradients = average_gradients(gradients)
# Add summaries of all variables and gradients to log
log_grads_and_vars(avg_tower_gradients)
# Op to merge all summaries for the summary hook
merge_all_summaries_op = tf.summary.merge_all()
# These are saved on every step
step_summaries_op = tf.summary.merge_all('step_summaries')
step_summary_writers = {
'train': tf.summary.FileWriter(os.path.join(FLAGS.summary_dir, 'train'), max_queue=120),
'dev': tf.summary.FileWriter(os.path.join(FLAGS.summary_dir, 'dev'), max_queue=120)
}
# Apply gradients to modify the model
apply_gradient_op = optimizer.apply_gradients(avg_tower_gradients, global_step=global_step)
if FLAGS.early_stop is True and not FLAGS.validation_step > 0:
log_warn('Parameter --validation_step needs to be >0 for early stopping to work')
class CoordHook(tf.train.SessionRunHook):
r'''
Embedded coordination hook-class that will use variables of the
surrounding Python context.
'''
def after_create_session(self, session, coord):
log_debug('Starting queue runners...')
model_feeder.start_queue_threads(session, coord)
log_debug('Queue runners started.')
def end(self, session):
# Closing the data_set queues
log_debug('Closing queues...')
model_feeder.close_queues(session)
log_debug('Queues closed.')
# Telling the ps that we are done
send_token_to_ps(session)
# Collecting the hooks
hooks = [CoordHook()]
# Hook to handle initialization and queues for sync replicas.
if not server is None:
hooks.append(optimizer.make_session_run_hook(Config.is_chief))
# Hook to save TensorBoard summaries
if FLAGS.summary_secs > 0:
hooks.append(tf.train.SummarySaverHook(save_secs=FLAGS.summary_secs, output_dir=FLAGS.summary_dir, summary_op=merge_all_summaries_op))
# Hook wih number of checkpoint files to save in checkpoint_dir
if FLAGS.train and FLAGS.max_to_keep > 0:
saver = tf.train.Saver(max_to_keep=FLAGS.max_to_keep)
hooks.append(tf.train.CheckpointSaverHook(checkpoint_dir=FLAGS.checkpoint_dir, save_secs=FLAGS.checkpoint_secs, saver=saver))
no_dropout_feed_dict = {
dropout_rates[0]: 0.,
dropout_rates[1]: 0.,
dropout_rates[2]: 0.,
dropout_rates[3]: 0.,
dropout_rates[4]: 0.,
dropout_rates[5]: 0.,
}
# Progress Bar
def update_progressbar(set_name):
if not hasattr(update_progressbar, 'current_set_name'):
update_progressbar.current_set_name = None
if (update_progressbar.current_set_name != set_name or
update_progressbar.current_job_index == update_progressbar.total_jobs):
# finish prev pbar if it exists
if hasattr(update_progressbar, 'pbar') and update_progressbar.pbar:
update_progressbar.pbar.finish()
update_progressbar.total_jobs = None
update_progressbar.current_job_index = 0
current_epoch = coord._epoch-1
if set_name == "train":
log_info('Training epoch %i...' % current_epoch)
update_progressbar.total_jobs = coord._num_jobs_train
else:
log_info('Validating epoch %i...' % current_epoch)
update_progressbar.total_jobs = coord._num_jobs_dev
# recreate pbar
update_progressbar.pbar = progressbar.ProgressBar(max_value=update_progressbar.total_jobs,
redirect_stdout=True).start()
update_progressbar.current_set_name = set_name
if update_progressbar.pbar:
update_progressbar.pbar.update(update_progressbar.current_job_index+1, force=True)
update_progressbar.current_job_index += 1
# Initialize update_progressbar()'s child fields to safe values
update_progressbar.pbar = None
# The MonitoredTrainingSession takes care of session initialization,
# restoring from a checkpoint, saving to a checkpoint, and closing when done
# or an error occurs.
try:
with tf.train.MonitoredTrainingSession(master='' if server is None else server.target,
is_chief=Config.is_chief,
hooks=hooks,
checkpoint_dir=FLAGS.checkpoint_dir,
save_checkpoint_secs=None, # already taken care of by a hook
log_step_count_steps=0, # disable logging of steps/s to avoid TF warning in validation sets
config=Config.session_config) as session:
tf.get_default_graph().finalize()
try:
if Config.is_chief:
# Retrieving global_step from the (potentially restored) model
model_feeder.set_data_set(no_dropout_feed_dict, model_feeder.train)
step = session.run(global_step, feed_dict=no_dropout_feed_dict)
coord.start_coordination(model_feeder, step)
# Get the first job
job = coord.get_job()
while job and not session.should_stop():
log_debug('Computing %s...' % job)
is_train = job.set_name == 'train'
# The feed_dict (mainly for switching between queues)
if is_train:
feed_dict = {
dropout_rates[0]: FLAGS.dropout_rate,
dropout_rates[1]: FLAGS.dropout_rate2,
dropout_rates[2]: FLAGS.dropout_rate3,
dropout_rates[3]: FLAGS.dropout_rate4,
dropout_rates[4]: FLAGS.dropout_rate5,
dropout_rates[5]: FLAGS.dropout_rate6,
}
else:
feed_dict = no_dropout_feed_dict
# Sets the current data_set for the respective placeholder in feed_dict
model_feeder.set_data_set(feed_dict, getattr(model_feeder, job.set_name))
# Initialize loss aggregator
total_loss = 0.0
# Setting the training operation in case of training requested
train_op = apply_gradient_op if is_train else []
# So far the only extra parameter is the feed_dict
extra_params = { 'feed_dict': feed_dict }
step_summary_writer = step_summary_writers.get(job.set_name)
# Loop over the batches
for job_step in range(job.steps):
if session.should_stop():
break
log_debug('Starting batch...')
# Compute the batch
_, current_step, batch_loss, step_summary = session.run([train_op, global_step, loss, step_summaries_op], **extra_params)
# Log step summaries
step_summary_writer.add_summary(step_summary, current_step)
# Uncomment the next line for debugging race conditions / distributed TF
log_debug('Finished batch step %d.' % current_step)
# Add batch to loss
total_loss += batch_loss
# Gathering job results
job.loss = total_loss / job.steps
# Display progressbar
if FLAGS.show_progressbar:
update_progressbar(job.set_name)
# Send the current job to coordinator and receive the next one
log_debug('Sending %s...' % job)
job = coord.next_job(job)
if update_progressbar.pbar:
update_progressbar.pbar.finish()
except Exception as e:
log_error(str(e))
traceback.print_exc()
# Calling all hook's end() methods to end blocking calls
for hook in hooks:
hook.end(session)
# Only chief has a SyncReplicasOptimizer queue runner that needs to be stopped for unblocking process exit.
# A rather graceful way to do this is by stopping the ps.
# Only one party can send it w/o failing.
if Config.is_chief:
send_token_to_ps(session, kill=True)
sys.exit(1)
log_debug('Session closed.')
except tf.errors.InvalidArgumentError as e:
log_error(str(e))
log_error('The checkpoint in {0} does not match the shapes of the model.'
' Did you change alphabet.txt or the --n_hidden parameter'
' between train runs using the same checkpoint dir? Try moving'
' or removing the contents of {0}.'.format(FLAGS.checkpoint_dir))
sys.exit(1)
# Stopping the coordinator
coord.stop()
def train(server=None):
r'''
Trains the network on a given server of a cluster.
If no server provided, it performs single process training.
'''
# Initializing and starting the training coordinator
coord = TrainingCoordinator(Config.is_chief)
coord.start()
# Create a variable to hold the global_step.
# It will automagically get incremented by the optimizer.
global_step = tf.Variable(0, trainable=False, name='global_step')
dropout_rates = [
tf.placeholder(tf.float32, name='dropout_{}'.format(i))
for i in range(6)
]
# Reading training set
train_data = preprocess(FLAGS.train_files.split(','),
FLAGS.train_batch_size,
Config.n_input,
Config.n_context,
Config.alphabet,
hdf5_cache_path=FLAGS.train_cached_features_path)
train_set = DataSet(train_data,
FLAGS.train_batch_size,
limit=FLAGS.limit_train,
next_index=lambda i: coord.get_next_index('train'))
# Reading validation set
dev_data = preprocess(FLAGS.dev_files.split(','),
FLAGS.dev_batch_size,
Config.n_input,
Config.n_context,
Config.alphabet,
hdf5_cache_path=FLAGS.dev_cached_features_path)
dev_set = DataSet(dev_data,
FLAGS.dev_batch_size,
limit=FLAGS.limit_dev,
next_index=lambda i: coord.get_next_index('dev'))
# Combining all sets to a multi set model feeder
model_feeder = ModelFeeder(train_set,
dev_set,
Config.n_input,
Config.n_context,
Config.alphabet,
tower_feeder_count=len(
Config.available_devices))
# Create the optimizer
optimizer = create_optimizer()
# Synchronous distributed training is facilitated by a special proxy-optimizer
if not server is None:
optimizer = tf.train.SyncReplicasOptimizer(
optimizer,
replicas_to_aggregate=FLAGS.replicas_to_agg,
total_num_replicas=FLAGS.replicas)
# Get the data_set specific graph end-points
gradients, loss = get_tower_results(model_feeder, optimizer, dropout_rates)
# Average tower gradients across GPUs
avg_tower_gradients = average_gradients(gradients)
# Add summaries of all variables and gradients to log
log_grads_and_vars(avg_tower_gradients)
# Op to merge all summaries for the summary hook
merge_all_summaries_op = tf.summary.merge_all()
# These are saved on every step
step_summaries_op = tf.summary.merge_all('step_summaries')
step_summary_writers = {
'train':
tf.summary.FileWriter(os.path.join(FLAGS.summary_dir, 'train'),
max_queue=120),
'dev':
tf.summary.FileWriter(os.path.join(FLAGS.summary_dir, 'dev'),
max_queue=120)
}
# Apply gradients to modify the model
apply_gradient_op = optimizer.apply_gradients(avg_tower_gradients,
global_step=global_step)
if FLAGS.early_stop is True and not FLAGS.validation_step > 0:
log_warn(
'Parameter --validation_step needs to be >0 for early stopping to work'
)
class CoordHook(tf.train.SessionRunHook):
r'''
Embedded coordination hook-class that will use variables of the
surrounding Python context.
'''
def after_create_session(self, session, coord):
log_debug('Starting queue runners...')
model_feeder.start_queue_threads(session, coord)
log_debug('Queue runners started.')
def end(self, session):
# Closing the data_set queues
log_debug('Closing queues...')
model_feeder.close_queues(session)
log_debug('Queues closed.')
# Telling the ps that we are done
send_token_to_ps(session)
# Collecting the hooks
hooks = [CoordHook()]
# Hook to handle initialization and queues for sync replicas.
if not server is None:
hooks.append(optimizer.make_session_run_hook(Config.is_chief))
# Hook to save TensorBoard summaries
if FLAGS.summary_secs > 0:
hooks.append(
tf.train.SummarySaverHook(save_secs=FLAGS.summary_secs,
output_dir=FLAGS.summary_dir,
summary_op=merge_all_summaries_op))
# Hook wih number of checkpoint files to save in checkpoint_dir
if FLAGS.train and FLAGS.max_to_keep > 0:
saver = tf.train.Saver(max_to_keep=FLAGS.max_to_keep)
hooks.append(
tf.train.CheckpointSaverHook(checkpoint_dir=FLAGS.checkpoint_dir,
save_secs=FLAGS.checkpoint_secs,
saver=saver))
no_dropout_feed_dict = {
dropout_rates[0]: 0.,
dropout_rates[1]: 0.,
dropout_rates[2]: 0.,
dropout_rates[3]: 0.,
dropout_rates[4]: 0.,
dropout_rates[5]: 0.,
}
# Progress Bar
def update_progressbar(set_name):
if not hasattr(update_progressbar, 'current_set_name'):
update_progressbar.current_set_name = None
if (update_progressbar.current_set_name != set_name
or update_progressbar.current_job_index
== update_progressbar.total_jobs):
# finish prev pbar if it exists
if hasattr(update_progressbar, 'pbar') and update_progressbar.pbar:
update_progressbar.pbar.finish()
update_progressbar.total_jobs = None
update_progressbar.current_job_index = 0
current_epoch = coord._epoch - 1
if set_name == "train":
log_info('Training epoch %i...' % current_epoch)
update_progressbar.total_jobs = coord._num_jobs_train
else:
log_info('Validating epoch %i...' % current_epoch)
update_progressbar.total_jobs = coord._num_jobs_dev
# recreate pbar
update_progressbar.pbar = progressbar.ProgressBar(
max_value=update_progressbar.total_jobs,
redirect_stdout=True).start()
update_progressbar.current_set_name = set_name
if update_progressbar.pbar:
update_progressbar.pbar.update(
update_progressbar.current_job_index + 1, force=True)
update_progressbar.current_job_index += 1
# Initialize update_progressbar()'s child fields to safe values
update_progressbar.pbar = None
# The MonitoredTrainingSession takes care of session initialization,
# restoring from a checkpoint, saving to a checkpoint, and closing when done
# or an error occurs.
try:
with tf.train.MonitoredTrainingSession(
master='' if server is None else server.target,
is_chief=Config.is_chief,
hooks=hooks,
checkpoint_dir=FLAGS.checkpoint_dir,
save_checkpoint_secs=None, # already taken care of by a hook
log_step_count_steps=
0, # disable logging of steps/s to avoid TF warning in validation sets
config=Config.session_config) as session:
tf.get_default_graph().finalize()
try:
if Config.is_chief:
# Retrieving global_step from the (potentially restored) model
model_feeder.set_data_set(no_dropout_feed_dict,
model_feeder.train)
step = session.run(global_step,
feed_dict=no_dropout_feed_dict)
coord.start_coordination(model_feeder, step)
# Get the first job
job = coord.get_job()
while job and not session.should_stop():
log_debug('Computing %s...' % job)
is_train = job.set_name == 'train'
# The feed_dict (mainly for switching between queues)
if is_train:
feed_dict = {
dropout_rates[0]: FLAGS.dropout_rate,
dropout_rates[1]: FLAGS.dropout_rate2,
dropout_rates[2]: FLAGS.dropout_rate3,
dropout_rates[3]: FLAGS.dropout_rate4,
dropout_rates[4]: FLAGS.dropout_rate5,
dropout_rates[5]: FLAGS.dropout_rate6,
}
else:
feed_dict = no_dropout_feed_dict
# Sets the current data_set for the respective placeholder in feed_dict
model_feeder.set_data_set(
feed_dict, getattr(model_feeder, job.set_name))
# Initialize loss aggregator
total_loss = 0.0
# Setting the training operation in case of training requested
train_op = apply_gradient_op if is_train else []
# So far the only extra parameter is the feed_dict
extra_params = {'feed_dict': feed_dict}
step_summary_writer = step_summary_writers.get(
job.set_name)
# Loop over the batches
for job_step in range(job.steps):
if session.should_stop():
break
log_debug('Starting batch...')
# Compute the batch
_, current_step, batch_loss, step_summary = session.run(
[train_op, global_step, loss, step_summaries_op],
**extra_params)
# Log step summaries
step_summary_writer.add_summary(
step_summary, current_step)
# Uncomment the next line for debugging race conditions / distributed TF
log_debug('Finished batch step %d.' % current_step)
# Add batch to loss
total_loss += batch_loss
# Gathering job results
job.loss = total_loss / job.steps
# Display progressbar
if FLAGS.show_progressbar:
update_progressbar(job.set_name)
# Send the current job to coordinator and receive the next one
log_debug('Sending %s...' % job)
job = coord.next_job(job)
if update_progressbar.pbar:
update_progressbar.pbar.finish()
except Exception as e:
log_error(str(e))
traceback.print_exc()
# Calling all hook's end() methods to end blocking calls
for hook in hooks:
hook.end(session)
# Only chief has a SyncReplicasOptimizer queue runner that needs to be stopped for unblocking process exit.
# A rather graceful way to do this is by stopping the ps.
# Only one party can send it w/o failing.
if Config.is_chief:
send_token_to_ps(session, kill=True)
sys.exit(1)
log_debug('Session closed.')
except tf.errors.InvalidArgumentError as e:
log_error(str(e))
log_error(
'The checkpoint in {0} does not match the shapes of the model.'
' Did you change alphabet.txt or the --n_hidden parameter'
' between train runs using the same checkpoint dir? Try moving'
' or removing the contents of {0}.'.format(FLAGS.checkpoint_dir))
sys.exit(1)
# Stopping the coordinator
coord.stop()
def train(server=None):
r'''
Trains the network on a given server of a cluster.
If no server provided, it performs single process training.
'''
# The transfer learning approach here need us to supply the layers which we
# want to exclude from the source model.
# Say we want to exclude all layers except for the first one, we can use this:
#
# drop_source_layers=['2', '3', 'lstm', '5', '6']
#
# If we want to use all layers from the source model except the last one, we use this:
#
# drop_source_layers=['6']
#
drop_source_layers = ['2', '3', 'lstm', '5',
'6'][-int(FLAGS.drop_source_layers):]
# Initializing and starting the training coordinator
coord = TrainingCoordinator(Config.is_chief)
coord.start()
# Create a variable to hold the global_step.
# It will automagically get incremented by the optimizer.
global_step = tf.Variable(0, trainable=False, name='global_step')
dropout_rates = [
tf.placeholder(tf.float32, name='dropout_{}'.format(i))
for i in range(6)
]
# Reading training set
train_data = preprocess(FLAGS.train_files.split(','),
FLAGS.train_batch_size,
Config.n_input,
Config.n_context,
Config.alphabet,
hdf5_cache_path=FLAGS.train_cached_features_path)
train_set = DataSet(train_data,
FLAGS.train_batch_size,
limit=FLAGS.limit_train,
next_index=lambda i: coord.get_next_index('train'))
# Reading validation set
dev_data = preprocess(FLAGS.dev_files.split(','),
FLAGS.dev_batch_size,
Config.n_input,
Config.n_context,
Config.alphabet,
hdf5_cache_path=FLAGS.dev_cached_features_path)
dev_set = DataSet(dev_data,
FLAGS.dev_batch_size,
limit=FLAGS.limit_dev,
next_index=lambda i: coord.get_next_index('dev'))
# Combining all sets to a multi set model feeder
model_feeder = ModelFeeder(train_set,
dev_set,
Config.n_input,
Config.n_context,
Config.alphabet,
tower_feeder_count=len(
Config.available_devices))
# Create the optimizer
optimizer = create_optimizer()
# Synchronous distributed training is facilitated by a special proxy-optimizer
if not server is None:
optimizer = tf.train.SyncReplicasOptimizer(
optimizer,
replicas_to_aggregate=FLAGS.replicas_to_agg,
total_num_replicas=FLAGS.replicas)
# Get the data_set specific graph end-points
gradients, loss = get_tower_results(model_feeder, optimizer, dropout_rates,
drop_source_layers)
# Average tower gradients across GPUs
avg_tower_gradients = average_gradients(gradients)
# Add summaries of all variables and gradients to log
log_grads_and_vars(avg_tower_gradients)
# Op to merge all summaries for the summary hook
merge_all_summaries_op = tf.summary.merge_all()
# These are saved on every step
step_summaries_op = tf.summary.merge_all('step_summaries')
step_summary_writers = {
'train':
tf.summary.FileWriter(os.path.join(FLAGS.summary_dir, 'train'),
max_queue=120),
'dev':
tf.summary.FileWriter(os.path.join(FLAGS.summary_dir, 'dev'),
max_queue=120)
}
# Apply gradients to modify the model
apply_gradient_op = optimizer.apply_gradients(avg_tower_gradients,
global_step=global_step)
if FLAGS.early_stop is True and not FLAGS.validation_step > 0:
log_warn(
'Parameter --validation_step needs to be >0 for early stopping to work'
)
class CoordHook(tf.train.SessionRunHook):
r'''
Embedded coordination hook-class that will use variables of the
surrounding Python context.
'''
def after_create_session(self, session, coord):
log_debug('Starting queue runners...')
model_feeder.start_queue_threads(session, coord)
log_debug('Queue runners started.')
def end(self, session):
# Closing the data_set queues
log_debug('Closing queues...')
model_feeder.close_queues(session)
log_debug('Queues closed.')
# Telling the ps that we are done
send_token_to_ps(session)
# Collecting the hooks
hooks = [CoordHook()]
# Hook to handle initialization and queues for sync replicas.
if not server is None:
hooks.append(optimizer.make_session_run_hook(Config.is_chief))
# Hook to save TensorBoard summaries
if FLAGS.summary_secs > 0:
hooks.append(
tf.train.SummarySaverHook(save_secs=FLAGS.summary_secs,
output_dir=FLAGS.summary_dir,
summary_op=merge_all_summaries_op))
# Hook wih number of checkpoint files to save in checkpoint_dir
if FLAGS.train and FLAGS.max_to_keep > 0:
saver = tf.train.Saver(max_to_keep=FLAGS.max_to_keep)
hooks.append(
tf.train.CheckpointSaverHook(checkpoint_dir=FLAGS.checkpoint_dir,
save_secs=FLAGS.checkpoint_secs,
saver=saver))
no_dropout_feed_dict = {
dropout_rates[0]: 0.,
dropout_rates[1]: 0.,
dropout_rates[2]: 0.,
dropout_rates[3]: 0.,
dropout_rates[4]: 0.,
dropout_rates[5]: 0.,
}
# Progress Bar
def update_progressbar(set_name):
if not hasattr(update_progressbar, 'current_set_name'):
update_progressbar.current_set_name = None
if (update_progressbar.current_set_name != set_name
or update_progressbar.current_job_index
== update_progressbar.total_jobs):
# finish prev pbar if it exists
if hasattr(update_progressbar, 'pbar') and update_progressbar.pbar:
update_progressbar.pbar.finish()
update_progressbar.total_jobs = None
update_progressbar.current_job_index = 0
current_epoch = coord._epoch - 1
sufix = "graph_noisySVA_CV_2layers_"
checkpoint_stash = "/docker_files/ckpt_stash/"
checkpoint = tf.train.get_checkpoint_state(FLAGS.checkpoint_dir)
checkpoint_path = checkpoint.model_checkpoint_path
ckpt_dest_name = sufix + str(current_epoch - 118) + "_eph"
str_to_replace = "s/" + checkpoint_path.split(
'/')[-1] + "/" + ckpt_dest_name + "/"
subprocess.Popen(
["cp", checkpoint_path + ".meta", checkpoint_stash])
#pdb.set_trace()
subprocess.Popen([
"rename", str_to_replace,
checkpoint_stash + checkpoint_path.split('/')[-1] + ".meta"
])
subprocess.Popen([
"cp", checkpoint_path + ".data-00000-of-00001",
checkpoint_stash
])
subprocess.Popen([
"rename", str_to_replace, checkpoint_stash +
checkpoint_path.split('/')[-1] + ".data-00000-of-00001"
])
subprocess.Popen(
["cp", checkpoint_path + ".index", checkpoint_stash])
subprocess.Popen([
"rename", str_to_replace,
checkpoint_stash + checkpoint_path.split('/')[-1] + ".index"
])
#HERE
if set_name == "train":
log_info('Training epoch %i...' % current_epoch)
update_progressbar.total_jobs = coord._num_jobs_train
else:
log_info('Validating epoch %i...' % current_epoch)
update_progressbar.total_jobs = coord._num_jobs_dev
# recreate pbar
update_progressbar.pbar = progressbar.ProgressBar(
max_value=update_progressbar.total_jobs,
redirect_stdout=True).start()
update_progressbar.current_set_name = set_name
if update_progressbar.pbar:
update_progressbar.pbar.update(
update_progressbar.current_job_index + 1, force=True)
update_progressbar.current_job_index += 1
# Initialize update_progressbar()'s child fields to safe values
update_progressbar.pbar = None
### TRANSFER LEARNING ###
def init_fn(scaffold, session):
if FLAGS.source_model_checkpoint_dir:
drop_source_layers.append('layer_6')
print('Initializing from', FLAGS.source_model_checkpoint_dir)
ckpt = tf.train.load_checkpoint(FLAGS.source_model_checkpoint_dir)
variables = list(ckpt.get_variable_to_shape_map().keys())
for v in tf.global_variables():
if not any(layer in v.op.name for layer in drop_source_layers):
#if not v.name.count('b6') or not v.name.count('h6') or not v.name.count('raw_logits'):
with open("/data/german_DS/deepspeech-german/nodes.txt",
"w") as nodetxtfile:
print('Loading', v.op.name)
nodetxtfile.write(v.op.name)
v.load(ckpt.get_tensor(v.op.name), session=session)
scaffold = tf.train.Scaffold(
init_op=tf.variables_initializer([
v for v in tf.global_variables()
if any(layer in v.op.name for layer in drop_source_layers)
] #or v.name.count('b6')]
),
init_fn=init_fn)
### TRANSFER LEARNING ###
pdb.set_trace()
# The MonitoredTrainingSession takes care of session initialization,
# restoring from a checkpoint, saving to a checkpoint, and closing when done
# or an error occurs.
try:
with tf.train.MonitoredTrainingSession(
master='' if server is None else server.target,
is_chief=Config.is_chief,
hooks=hooks,
scaffold=scaffold, # transfer-learning
checkpoint_dir=FLAGS.checkpoint_dir,
save_checkpoint_secs=None, # already taken care of by a hook
log_step_count_steps=
0, # disable logging of steps/s to avoid TF warning in validation sets
config=Config.session_config) as session:
#tf.get_default_graph().finalize()
#do_export = False
try:
if Config.is_chief:
# Retrieving global_step from the (potentially restored) model
model_feeder.set_data_set(no_dropout_feed_dict,
model_feeder.train)
step = session.run(global_step,
feed_dict=no_dropout_feed_dict)
coord.start_coordination(model_feeder, step)
#if do_export:
#export(session)
#print("########INDISE EXPORT###########")
#do_export = True
# Get the first job
job = coord.get_job()
while job and not session.should_stop():
log_debug('Computing %s...' % job)
is_train = job.set_name == 'train'
# The feed_dict (mainly for switching between queues)
if is_train:
feed_dict = {
dropout_rates[0]: FLAGS.dropout_rate,
dropout_rates[1]: FLAGS.dropout_rate2,
dropout_rates[2]: FLAGS.dropout_rate3,
dropout_rates[3]: FLAGS.dropout_rate4,
dropout_rates[4]: FLAGS.dropout_rate5,
dropout_rates[5]: FLAGS.dropout_rate6,
}
else:
feed_dict = no_dropout_feed_dict
# Sets the current data_set for the respective placeholder in feed_dict
model_feeder.set_data_set(
feed_dict, getattr(model_feeder, job.set_name))
# Initialize loss aggregator
total_loss = 0.0
# Setting the training operation in case of training requested
train_op = apply_gradient_op if is_train else []
# So far the only extra parameter is the feed_dict
extra_params = {'feed_dict': feed_dict}
step_summary_writer = step_summary_writers.get(
job.set_name)
# Loop over the batches
for job_step in range(job.steps):
if session.should_stop():
break
log_debug('Starting batch...')
# Compute the batch
_, current_step, batch_loss, step_summary = session.run(
[train_op, global_step, loss, step_summaries_op],
**extra_params)
# Log step summaries
step_summary_writer.add_summary(
step_summary, current_step)
# Uncomment the next line for debugging race conditions / distributed TF
log_debug('Finished batch step %d.' % current_step)
# Add batch to loss
total_loss += batch_loss
# Gathering job results
job.loss = total_loss / job.steps
# Display progressbar
if FLAGS.show_progressbar:
update_progressbar(job.set_name)
# Send the current job to coordinator and receive the next one
log_debug('Sending %s...' % job)
job = coord.next_job(job)
if update_progressbar.pbar:
update_progressbar.pbar.finish()
#export()
#mapping = {v.op.name: v for v in tf.global_variables() if not v.op.name.startswith('previous_state_')}
#saver = tf.train.Saver(mapping)
#def do_graph_freeze(output_file=None, output_node_names=None, variables_blacklist=None):
# freeze_graph.freeze_graph_with_def_protos(
# input_graph_def=session.graph_def,
# input_saver_def=saver.as_saver_def(),
# input_checkpoint=checkpoint_path,
# output_node_names=output_node_names,
# restore_op_name=None,
# filename_tensor_name=None,
# output_graph=output_file,
# clear_devices=False,
# variable_names_blacklist=variables_blacklist,
# initializer_nodes='')
#output_graph_path = "output_graph.pb"
#do_graph_freeze(output_file=output_graph_path, output_node_names='logits,initialize_state', variables_blacklist='previous_state_c,previous_state_h')
except Exception as e:
log_error(str(e))
traceback.print_exc()
# Calling all hook's end() methods to end blocking calls
for hook in hooks:
hook.end(session)
# Only chief has a SyncReplicasOptimizer queue runner that needs to be stopped for unblocking process exit.
# A rather graceful way to do this is by stopping the ps.
# Only one party can send it w/o failing.
if Config.is_chief:
send_token_to_ps(session, kill=True)
sys.exit(1)
log_debug('Session closed.')
except tf.errors.InvalidArgumentError as e:
log_error(str(e))
log_error(
'The checkpoint in {0} does not match the shapes of the model.'
' Did you change alphabet.txt or the --n_hidden parameter'
' between train runs using the same checkpoint dir? Try moving'
' or removing the contents of {0}.'.format(FLAGS.checkpoint_dir))
sys.exit(1)
# Stopping the coordinator
coord.stop()