def verify_result(plan, gene):
print "Testing", plan, gene
data_dir = os.path.join(DATA_DIR, drop_extension(plan))
execute_stylus_plan(gene, plan, './test_data', './sample', './sample',
'./sample/plans', data_dir)
xml_directory_compare(
os.path.join('test_data', drop_extension(plan), drop_extension(gene)),
os.path.join(data_dir, drop_extension(gene)))
def collect_test_data(plan, gene):
plan_name = drop_extension(plan)
gene_name = drop_extension(os.path.basename(gene))
if (gene_name, plan_name) not in BLACKLIST:
print "Collecting test data for plan: ", plan_name, "gene: ", gene_name
target_path = os.path.join("test_data", plan_name)
execute_stylus_plan(
os.path.basename(gene), plan, "./test_data", "./sample/", "./sample/", "./sample/plans", target_path
)
def collect_test_data(plan, gene):
plan_name = drop_extension(plan)
gene_name = drop_extension(os.path.basename(gene))
if (gene_name, plan_name) not in BLACKLIST:
print "Collecting test data for plan: ", plan_name, "gene: ", gene_name
target_path = os.path.join('test_data', plan_name)
execute_stylus_plan(os.path.basename(gene), plan, './test_data',
'./sample/', './sample/', './sample/plans',
target_path)
def verify_result(plan, gene):
print "Testing", plan, gene
data_dir = os.path.join(DATA_DIR, drop_extension(plan))
execute_stylus_plan(gene, plan, './test_data', './sample',
'./sample', './sample/plans', data_dir)
xml_directory_compare(
os.path.join('test_data', drop_extension(plan), drop_extension(gene) ),
os.path.join(data_dir, drop_extension(gene) )
)
def main():
try:
shutil.rmtree(DATA_DIR)
except OSError:
pass
plans = list(find_plans())
genes = list(find_genes())
for plan in plans:
for gene in genes:
if (drop_extension(gene), drop_extension(plan)) not in BLACKLIST:
verify_result(plan, gene)
def main():
try:
shutil.rmtree(DATA_DIR)
except OSError:
pass
plans = list(find_plans())
genes = list(find_genes())
for plan in plans:
for gene in genes:
if (drop_extension(gene), drop_extension(plan)) not in BLACKLIST:
verify_result(plan, gene)