def __init__(self, name, a, d, mu_r, mu_v, delta_r, delta_v):
self.name = name
self.a = a
self.d = d
self.mu_r = mu_r
self.mu_v = mu_v
self.delta_r = delta_r
self.delta_v = delta_v
self.log_pi_r = self._get_log_mix_wts(delta_r)
self.log_pi_v = self._get_log_mix_wts(delta_v)
self._log_bin_norm_const = [u.log_bin_coeff(self.d[tp], self.a[tp]) for tp in arange(len(self.a))]
def __init__(self, name, id, a, d, mu_r=0, mu_v=0): self.name = name # SSM name, blank for CNV self.id = id self.a = a self.d = d self.mu_r = mu_r # 1-p_error self.mu_v = mu_v self._log_bin_norm_const = [u.log_bin_coeff(self.d[tp], self.a[tp]) for tp in arange(len(self.a))] ## all variables below are used by cnv related computations self.nr = 0 self.nv = 0 self.node = None # this is the node where the datum resides self.cnv = [] # for SSM, this is [(cnv,cp,cm)] self.tssb = None # this is just a pointer to tssb (tree object), gets initialized in evolve.py
def __init__(self, name, id, a, d, mu_r=0, mu_v=0): self.name = name # SSM name, blank for CNV self.id = id self.a = a self.d = d self.mu_r = mu_r # 1-p_error self.mu_v = mu_v self._log_bin_norm_const = [u.log_bin_coeff(self.d[tp], self.a[tp]) for tp in arange(len(self.a))] ## all variables below are used by cnv related computations self.nr = 0 self.nv = 0 self.node = None # this is the node where the datum resides self.cnv = [] # for SSM, this is [(cnv,cp,cm)] self.tssb = None # this is just a pointer to tssb (tree object), gets initialized in evolve.py
def __init__(self, name,id,a, d, mu_r, mu_v, delta_r, delta_v): self.name = name; self.id=id; self.a=a self.d=d self.mu_r=mu_r self.mu_v=mu_v self.delta_r = delta_r self.delta_v = delta_v self.log_pi_r = self._get_log_mix_wts(delta_r) self.log_pi_v = self._get_log_mix_wts(delta_v) self._log_bin_norm_const = [u.log_bin_coeff(self.d[tp], self.a[tp]) for tp in arange(len(self.a))] self.pairs = [(mu_r,mu_v,log_pi_r+log_pi_v) for mu_r, log_pi_r in zip(self.mu_r, self.log_pi_r) for mu_v, log_pi_v in zip(self.mu_v, self.log_pi_v)]
def __init__(self, name, a, d, mu_r, mu_v, delta_r, delta_v):
self.name = name
self.a = a
self.d = d
self.mu_r = mu_r
self.mu_v = mu_v
self.delta_r = delta_r
self.delta_v = delta_v
self.log_pi_r = self._get_log_mix_wts(delta_r)
self.log_pi_v = self._get_log_mix_wts(delta_v)
self._log_bin_norm_const = [
u.log_bin_coeff(self.d[tp], self.a[tp])
for tp in arange(len(self.a))
]
def __init__(self, name, id, a, d, mu_r, mu_v, delta_r, delta_v):
self.name = name
self.id = id
self.a = a
self.d = d
self.mu_r = mu_r
self.mu_v = mu_v
self.delta_r = delta_r
self.delta_v = delta_v
self.log_pi_r = self._get_log_mix_wts(delta_r)
self.log_pi_v = self._get_log_mix_wts(delta_v)
self._log_bin_norm_const = [
u.log_bin_coeff(self.d[tp], self.a[tp])
for tp in arange(len(self.a))
]
self.pairs = [(mu_r, mu_v, log_pi_r + log_pi_v)
for mu_r, log_pi_r in zip(self.mu_r, self.log_pi_r)
for mu_v, log_pi_v in zip(self.mu_v, self.log_pi_v)]
