def main(params, data_path, save_path):
conf = ModelConf("cache", params.conf_path, version, params)
if ProblemTypes[conf.problem_type] == ProblemTypes.sequence_tagging:
problem = Problem(conf.problem_type,
conf.input_types,
conf.answer_column_name,
source_with_start=True,
source_with_end=True,
source_with_unk=True,
source_with_pad=True,
target_with_start=True,
target_with_end=True,
target_with_unk=True,
target_with_pad=True,
same_length=True,
with_bos_eos=conf.add_start_end_for_seq,
tagging_scheme=conf.tagging_scheme,
remove_stopwords=conf.remove_stopwords,
DBC2SBC=conf.DBC2SBC,
unicode_fix=conf.unicode_fix)
elif ProblemTypes[conf.problem_type] == ProblemTypes.classification \
or ProblemTypes[conf.problem_type] == ProblemTypes.regression:
problem = Problem(conf.problem_type,
conf.input_types,
conf.answer_column_name,
source_with_start=True,
source_with_end=True,
source_with_unk=True,
source_with_pad=True,
target_with_start=False,
target_with_end=False,
target_with_unk=False,
target_with_pad=False,
same_length=True,
with_bos_eos=conf.add_start_end_for_seq,
remove_stopwords=conf.remove_stopwords,
DBC2SBC=conf.DBC2SBC,
unicode_fix=conf.unicode_fix)
if os.path.isfile(conf.problem_path):
problem.load_problem(conf.problem_path)
logging.info("Cache loaded!")
logging.debug("Cache loaded from %s" % conf.problem_path)
else:
raise Exception("Cache does not exist!")
data, length, target = problem.encode(data_path,
conf.file_columns,
conf.input_types,
conf.file_with_col_header,
conf.object_inputs,
conf.answer_column_name,
conf.min_sentence_len,
extra_feature=conf.extra_feature,
max_lengths=conf.max_lengths,
file_format='tsv')
if not os.path.isdir(os.path.dirname(save_path)):
os.makedirs(os.path.dirname(save_path))
dump_to_pkl({'data': data, 'length': length, 'target': target}, save_path)
def save(self, conf, params, problem, emb_matrix):
if not os.path.exists(conf.cache_dir):
os.makedirs(conf.cache_dir)
shutil.copy(params.conf_path,
os.path.join(conf.cache_dir, 'conf_cache.json'))
if self.dictionary_invalid:
if conf.mode == 'philly' and conf.emb_pkl_path.startswith(
'/hdfs/'):
with HDFSDirectTransferer(
conf.problem_path,
with_hdfs_command=True) as transferer:
transferer.pkl_dump(
problem.export_problem(conf.problem_path,
ret_without_save=True))
else:
problem.export_problem(conf.problem_path)
logging.info("[Cache] problem is saved to %s" % conf.problem_path)
if emb_matrix is not None and conf.emb_pkl_path is not None:
if conf.mode == 'philly' and conf.emb_pkl_path.startswith(
'/hdfs/'):
with HDFSDirectTransferer(
conf.emb_pkl_path,
with_hdfs_command=True) as transferer:
transferer.pkl_dump(emb_matrix)
else:
dump_to_pkl(emb_matrix, conf.emb_pkl_path)
logging.info("Embedding matrix saved to %s" % conf.emb_pkl_path)
if self.encoding_invalid:
pass
def main(params):
conf = ModelConf("train", params.conf_path, version, params, mode=params.mode)
shutil.copy(params.conf_path, conf.save_base_dir)
logging.info('Configuration file is backed up to %s' % (conf.save_base_dir))
if ProblemTypes[conf.problem_type] == ProblemTypes.sequence_tagging:
problem = Problem(conf.problem_type, conf.input_types, conf.answer_column_name,
source_with_start=True, source_with_end=True, source_with_unk=True, source_with_pad=True,
target_with_start=True, target_with_end=True, target_with_unk=True, target_with_pad=True, same_length=True,
with_bos_eos=conf.add_start_end_for_seq, tagging_scheme=conf.tagging_scheme,
remove_stopwords=conf.remove_stopwords, DBC2SBC=conf.DBC2SBC, unicode_fix=conf.unicode_fix)
elif ProblemTypes[conf.problem_type] == ProblemTypes.classification \
or ProblemTypes[conf.problem_type] == ProblemTypes.regression:
problem = Problem(conf.problem_type, conf.input_types, conf.answer_column_name,
source_with_start=True, source_with_end=True, source_with_unk=True, source_with_pad=True,
target_with_start=False, target_with_end=False, target_with_unk=False, target_with_pad=False,
same_length=False, with_bos_eos=conf.add_start_end_for_seq, remove_stopwords=conf.remove_stopwords,
DBC2SBC=conf.DBC2SBC, unicode_fix=conf.unicode_fix)
elif ProblemTypes[conf.problem_type] == ProblemTypes.mrc:
problem = Problem(conf.problem_type, conf.input_types, conf.answer_column_name,
source_with_start=True, source_with_end=True, source_with_unk=True, source_with_pad=True,
target_with_start=False, target_with_end=False, target_with_unk=False, target_with_pad=False,
same_length=False, with_bos_eos=False, remove_stopwords=conf.remove_stopwords,
DBC2SBC=conf.DBC2SBC, unicode_fix=conf.unicode_fix)
cache_load_flag = False
if not conf.pretrained_model_path:
# first time training, load cache if appliable
if conf.use_cache:
cache_conf_path = os.path.join(conf.cache_dir, 'conf_cache.json')
if os.path.isfile(cache_conf_path):
params_cache = copy.deepcopy(params)
'''
for key in vars(params_cache):
setattr(params_cache, key, None)
params_cache.mode = params.mode
'''
try:
cache_conf = ModelConf('cache', cache_conf_path, version, params_cache)
except Exception as e:
cache_conf = None
if cache_conf is None or verify_cache(cache_conf, conf) is not True:
logging.info('Found cache that is ineffective')
if params.mode == 'philly' or params.force is True:
renew_option = 'yes'
else:
renew_option = input('There exists ineffective cache %s for old models. Input "yes" to renew cache and "no" to exit. (default:no): ' % os.path.abspath(conf.cache_dir))
if renew_option.lower() != 'yes':
exit(0)
else:
shutil.rmtree(conf.cache_dir)
time.sleep(2) # sleep 2 seconds since the deleting is asynchronous
logging.info('Old cache is deleted')
else:
logging.info('Found cache that is appliable to current configuration...')
elif os.path.isdir(conf.cache_dir):
renew_option = input('There exists ineffective cache %s for old models. Input "yes" to renew cache and "no" to exit. (default:no): ' % os.path.abspath(conf.cache_dir))
if renew_option.lower() != 'yes':
exit(0)
else:
shutil.rmtree(conf.cache_dir)
time.sleep(2) # Sleep 2 seconds since the deleting is asynchronous
logging.info('Old cache is deleted')
if not os.path.exists(conf.cache_dir):
os.makedirs(conf.cache_dir)
shutil.copy(params.conf_path, os.path.join(conf.cache_dir, 'conf_cache.json'))
# first time training, load problem from cache, and then backup the cache to model_save_dir/.necessary_cache/
if conf.use_cache and os.path.isfile(conf.problem_path):
problem.load_problem(conf.problem_path)
if conf.emb_pkl_path is not None:
if os.path.isfile(conf.emb_pkl_path):
emb_matrix = np.array(load_from_pkl(conf.emb_pkl_path))
cache_load_flag = True
else:
if params.mode == 'normal':
renew_option = input('The cache is invalid because the embedding matrix does not exist in the cache directory. Input "yes" to renew cache and "no" to exit. (default:no): ')
if renew_option.lower() != 'yes':
exit(0)
else:
# by default, renew cache
renew_option = 'yes'
else:
emb_matrix = None
cache_load_flag = True
if cache_load_flag:
logging.info("Cache loaded!")
if cache_load_flag is False:
logging.info("Preprocessing... Depending on your corpus size, this step may take a while.")
if conf.pretrained_emb_path:
emb_matrix = problem.build(conf.train_data_path, conf.file_columns, conf.input_types, conf.file_with_col_header,
conf.answer_column_name, word2vec_path=conf.pretrained_emb_path,
word_emb_dim=conf.pretrained_emb_dim, format=conf.pretrained_emb_type,
file_type=conf.pretrained_emb_binary_or_text, involve_all_words=conf.involve_all_words_in_pretrained_emb,
show_progress=True if params.mode == 'normal' else False, max_vocabulary=conf.max_vocabulary,
word_frequency=conf.min_word_frequency)
else:
emb_matrix = problem.build(conf.train_data_path, conf.file_columns, conf.input_types, conf.file_with_col_header,
conf.answer_column_name, word2vec_path=None, word_emb_dim=None, format=None,
file_type=None, involve_all_words=conf.involve_all_words_in_pretrained_emb,
show_progress=True if params.mode == 'normal' else False,
max_vocabulary=conf.max_vocabulary, word_frequency=conf.min_word_frequency)
if conf.mode == 'philly' and conf.emb_pkl_path.startswith('/hdfs/'):
with HDFSDirectTransferer(conf.problem_path, with_hdfs_command=True) as transferer:
transferer.pkl_dump(problem.export_problem(conf.problem_path, ret_without_save=True))
else:
problem.export_problem(conf.problem_path)
if conf.use_cache:
logging.info("Cache saved to %s" % conf.problem_path)
if emb_matrix is not None and conf.emb_pkl_path is not None:
if conf.mode == 'philly' and conf.emb_pkl_path.startswith('/hdfs/'):
with HDFSDirectTransferer(conf.emb_pkl_path, with_hdfs_command=True) as transferer:
transferer.pkl_dump(emb_matrix)
else:
dump_to_pkl(emb_matrix, conf.emb_pkl_path)
logging.info("Embedding matrix saved to %s" % conf.emb_pkl_path)
else:
logging.debug("Cache saved to %s" % conf.problem_path)
# Back up the problem.pkl to save_base_dir/.necessary_cache. During test phase, we would load cache from save_base_dir/.necessary_cache/problem.pkl
cache_bakup_path = os.path.join(conf.save_base_dir, 'necessary_cache/')
logging.debug('Prepare dir: %s' % cache_bakup_path)
prepare_dir(cache_bakup_path, True, allow_overwrite=True, clear_dir_if_exist=True)
shutil.copy(conf.problem_path, cache_bakup_path)
logging.debug("Problem %s is backed up to %s" % (conf.problem_path, cache_bakup_path))
if problem.output_dict:
logging.debug("Problem target cell dict: %s" % (problem.output_dict.cell_id_map))
if params.make_cache_only:
logging.info("Finish building cache!")
return
vocab_info = dict() # include input_type's vocab_size & init_emd_matrix
vocab_sizes = problem.get_vocab_sizes()
for input_cluster in vocab_sizes:
vocab_info[input_cluster] = dict()
vocab_info[input_cluster]['vocab_size'] = vocab_sizes[input_cluster]
# add extra info for char_emb
if input_cluster.lower() == 'char':
for key, value in conf.input_types[input_cluster].items():
if key != 'cols':
vocab_info[input_cluster][key] = value
if input_cluster == 'word' and emb_matrix is not None:
vocab_info[input_cluster]['init_weights'] = emb_matrix
else:
vocab_info[input_cluster]['init_weights'] = None
lm = LearningMachine('train', conf, problem, vocab_info=vocab_info, initialize=True, use_gpu=conf.use_gpu)
else:
# when finetuning, load previous saved problem
problem.load_problem(conf.saved_problem_path)
lm = LearningMachine('train', conf, problem, vocab_info=None, initialize=False, use_gpu=conf.use_gpu)
if len(conf.metrics_post_check) > 0:
for metric_to_chk in conf.metrics_post_check:
metric, target = metric_to_chk.split('@')
if not problem.output_dict.has_cell(target):
raise Exception("The target %s of %s does not exist in the training data." % (target, metric_to_chk))
if conf.pretrained_model_path:
logging.info('Loading the pretrained model: %s...' % conf.pretrained_model_path)
lm.load_model(conf.pretrained_model_path)
loss_conf = conf.loss
loss_conf['output_layer_id'] = conf.output_layer_id
loss_conf['answer_column_name'] = conf.answer_column_name
# loss_fn = eval(loss_conf['type'])(**loss_conf['conf'])
loss_fn = Loss(**loss_conf)
if conf.use_gpu is True:
loss_fn.cuda()
optimizer = eval(conf.optimizer_name)(lm.model.parameters(), **conf.optimizer_params)
lm.train(optimizer, loss_fn)
# test the best model with the best model saved
lm.load_model(conf.model_save_path)
if conf.test_data_path is not None:
test_path = conf.test_data_path
elif conf.valid_data_path is not None:
test_path = conf.valid_data_path
logging.info('Testing the best model saved at %s, with %s' % (conf.model_save_path, test_path))
if not test_path.endswith('pkl'):
lm.test(loss_fn, test_path, predict_output_path=conf.predict_output_path)
else:
lm.test(loss_fn, test_path)