def __init__(self, train_X=None, train_Y=None, valid_X=None, valid_Y=None, test_X=None, test_Y=None, args=None, logger=None):
# Output logger
self.logger = logger
self.outdir = args.get("output_path", defaults["output_path"])
if self.outdir[-1] != '/':
self.outdir = self.outdir+'/'
data.mkdir_p(self.outdir)
# Configuration
config_filename = self.outdir+'config'
logger.log('Saving config')
with open(config_filename, 'w') as f:
f.write(str(args))
# Input data - make sure it is a list of shared datasets if it isn't. THIS WILL KEEP 'NONE' AS 'NONE' no need to worry :)
self.train_X = raise_to_list(train_X)
self.train_Y = raise_to_list(train_Y)
self.valid_X = raise_to_list(valid_X)
self.valid_Y = raise_to_list(valid_Y)
self.test_X = raise_to_list(test_X)
self.test_Y = raise_to_list(test_Y)
# variables from the dataset that are used for initialization and image reconstruction
if self.train_X is None:
self.N_input = args.get("input_size")
if args.get("input_size") is None:
raise AssertionError("Please either specify input_size in the arguments or provide an example train_X for input dimensionality.")
else:
self.N_input = self.train_X[0].get_value(borrow=True).shape[1]
self.is_image = args.get('is_image', defaults['is_image'])
if self.is_image:
(_h, _w) = closest_to_square_factors(self.N_input)
self.image_width = args.get('width', _w)
self.image_height = args.get('height', _h)
#######################################
# Network and training specifications #
#######################################
self.layers = args.get('layers', defaults['layers']) # number hidden layers
self.walkbacks = args.get('walkbacks', defaults['walkbacks']) # number of walkbacks
self.learning_rate = theano.shared(cast32(args.get('learning_rate', defaults['learning_rate']))) # learning rate
self.init_learn_rate = cast32(args.get('learning_rate', defaults['learning_rate']))
self.momentum = theano.shared(cast32(args.get('momentum', defaults['momentum']))) # momentum term
self.annealing = cast32(args.get('annealing', defaults['annealing'])) # exponential annealing coefficient
self.noise_annealing = cast32(args.get('noise_annealing', defaults['noise_annealing'])) # exponential noise annealing coefficient
self.batch_size = args.get('batch_size', defaults['batch_size'])
self.gsn_batch_size = args.get('gsn_batch_size', defaults['gsn_batch_size'])
self.n_epoch = args.get('n_epoch', defaults['n_epoch'])
self.early_stop_threshold = args.get('early_stop_threshold', defaults['early_stop_threshold'])
self.early_stop_length = args.get('early_stop_length', defaults['early_stop_length'])
self.save_frequency = args.get('save_frequency', defaults['save_frequency'])
self.noiseless_h1 = args.get('noiseless_h1', defaults["noiseless_h1"])
self.hidden_add_noise_sigma = theano.shared(cast32(args.get('hidden_add_noise_sigma', defaults["hidden_add_noise_sigma"])))
self.input_salt_and_pepper = theano.shared(cast32(args.get('input_salt_and_pepper', defaults["input_salt_and_pepper"])))
self.input_sampling = args.get('input_sampling', defaults["input_sampling"])
self.vis_init = args.get('vis_init', defaults['vis_init'])
self.initialize_gsn = args.get('initialize_gsn', defaults['initialize_gsn'])
self.hessian_free = args.get('hessian_free', defaults['hessian_free'])
self.hidden_size = args.get('hidden_size', defaults['hidden_size'])
self.layer_sizes = [self.N_input] + [self.hidden_size] * self.layers # layer sizes, from h0 to hK (h0 is the visible layer)
self.recurrent_hidden_size = args.get('recurrent_hidden_size', defaults['recurrent_hidden_size'])
self.f_recon = None
self.f_noise = None
# Activation functions!
# For the GSN:
if args.get('hidden_activation') is not None:
log.maybeLog(self.logger, 'Using specified activation for GSN hiddens')
self.hidden_activation = args.get('hidden_activation')
elif args.get('hidden_act') is not None:
self.hidden_activation = get_activation_function(args.get('hidden_act'))
log.maybeLog(self.logger, 'Using {0!s} activation for GSN hiddens'.format(args.get('hidden_act')))
else:
log.maybeLog(self.logger, "Using default activation for GSN hiddens")
self.hidden_activation = defaults['hidden_activation']
# For the RNN:
if args.get('recurrent_hidden_activation') is not None:
log.maybeLog(self.logger, 'Using specified activation for RNN hiddens')
self.recurrent_hidden_activation = args.get('recurrent_hidden_activation')
elif args.get('recurrent_hidden_act') is not None:
self.recurrent_hidden_activation = get_activation_function(args.get('recurrent_hidden_act'))
log.maybeLog(self.logger, 'Using {0!s} activation for RNN hiddens'.format(args.get('recurrent_hidden_act')))
else:
log.maybeLog(self.logger, "Using default activation for RNN hiddens")
self.recurrent_hidden_activation = defaults['recurrent_hidden_activation']
# Visible layer activation
if args.get('visible_activation') is not None:
log.maybeLog(self.logger, 'Using specified activation for visible layer')
self.visible_activation = args.get('visible_activation')
elif args.get('visible_act') is not None:
self.visible_activation = get_activation_function(args.get('visible_act'))
log.maybeLog(self.logger, 'Using {0!s} activation for visible layer'.format(args.get('visible_act')))
else:
log.maybeLog(self.logger, 'Using default activation for visible layer')
self.visible_activation = defaults['visible_activation']
# Cost function!
if args.get('cost_function') is not None:
log.maybeLog(self.logger, '\nUsing specified cost function for GSN training\n')
self.cost_function = args.get('cost_function')
elif args.get('cost_funct') is not None:
self.cost_function = get_cost_function(args.get('cost_funct'))
log.maybeLog(self.logger, 'Using {0!s} for cost function'.format(args.get('cost_funct')))
else:
log.maybeLog(self.logger, '\nUsing default cost function for GSN training\n')
self.cost_function = defaults['cost_function']
############################
# Theano variables and RNG #
############################
self.X = T.fmatrix('X') #single (batch) for training gsn
self.Xs = T.fmatrix('Xs') #sequence for training rnn-gsn
self.MRG = RNG_MRG.MRG_RandomStreams(1)
###############
# Parameters! #
###############
#gsn
self.weights_list = [get_shared_weights(self.layer_sizes[i], self.layer_sizes[i+1], name="W_{0!s}_{1!s}".format(i,i+1)) for i in range(self.layers)] # initialize each layer to uniform sample from sqrt(6. / (n_in + n_out))
self.bias_list = [get_shared_bias(self.layer_sizes[i], name='b_'+str(i)) for i in range(self.layers + 1)] # initialize each layer to 0's.
#recurrent
self.recurrent_to_gsn_weights_list = [get_shared_weights(self.recurrent_hidden_size, self.layer_sizes[layer], name="W_u_h{0!s}".format(layer)) for layer in range(self.layers+1) if layer%2 != 0]
self.W_u_u = get_shared_weights(self.recurrent_hidden_size, self.recurrent_hidden_size, name="W_u_u")
self.W_x_u = get_shared_weights(self.N_input, self.recurrent_hidden_size, name="W_x_u")
self.recurrent_bias = get_shared_bias(self.recurrent_hidden_size, name='b_u')
#lists for use with gradients
self.gsn_params = self.weights_list + self.bias_list
self.u_params = [self.W_u_u, self.W_x_u, self.recurrent_bias]
self.params = self.gsn_params + self.recurrent_to_gsn_weights_list + self.u_params
###########################################################
# load initial parameters of gsn #
###########################################################
self.train_gsn_first = False
if self.initialize_gsn:
params_to_load = 'gsn_params_epoch_30.pkl'
if not os.path.isfile(params_to_load):
self.train_gsn_first = True
else:
log.maybeLog(self.logger, "\nLoading existing GSN parameters\n")
loaded_params = cPickle.load(open(params_to_load,'r'))
[p.set_value(lp.get_value(borrow=False)) for lp, p in zip(loaded_params[:len(self.weights_list)], self.weights_list)]
[p.set_value(lp.get_value(borrow=False)) for lp, p in zip(loaded_params[len(self.weights_list):], self.bias_list)]
if self.initialize_gsn:
self.gsn_args = {'weights_list': self.weights_list,
'bias_list': self.bias_list,
'hidden_activation': self.hidden_activation,
'visible_activation': self.visible_activation,
'cost_function': self.cost_function,
'layers': self.layers,
'walkbacks': self.walkbacks,
'hidden_size': self.hidden_size,
'learning_rate': args.get('learning_rate', defaults['learning_rate']),
'momentum': args.get('momentum', defaults['momentum']),
'annealing': self.annealing,
'noise_annealing': self.noise_annealing,
'batch_size': self.gsn_batch_size,
'n_epoch': self.n_epoch,
'early_stop_threshold': self.early_stop_threshold,
'early_stop_length': self.early_stop_length,
'save_frequency': self.save_frequency,
'noiseless_h1': self.noiseless_h1,
'hidden_add_noise_sigma': args.get('hidden_add_noise_sigma', defaults['hidden_add_noise_sigma']),
'input_salt_and_pepper': args.get('input_salt_and_pepper', defaults['input_salt_and_pepper']),
'input_sampling': self.input_sampling,
'vis_init': self.vis_init,
'output_path': self.outdir+'gsn/',
'is_image': self.is_image,
'input_size': self.N_input
}
############
# Sampling #
############
# the input to the sampling function
X_sample = T.fmatrix("X_sampling")
self.network_state_input = [X_sample] + [T.fmatrix("H_sampling_"+str(i+1)) for i in range(self.layers)]
# "Output" state of the network (noisy)
# initialized with input, then we apply updates
self.network_state_output = [X_sample] + self.network_state_input[1:]
visible_pX_chain = []
# ONE update
_add_noise = True
log.maybeLog(self.logger, "Performing one walkback in network state sampling.")
GSN.update_layers(self.network_state_output,
self.weights_list,
self.bias_list,
visible_pX_chain,
_add_noise,
self.noiseless_h1,
self.hidden_add_noise_sigma,
self.input_salt_and_pepper,
self.input_sampling,
self.MRG,
self.visible_activation,
self.hidden_activation,
self.logger)
#############################################
# Build the graphs for the RNN-GSN #
#############################################
# If `x_t` is given, deterministic recurrence to compute the u_t. Otherwise, first generate
def recurrent_step(x_t, u_tm1, add_noise):
# Make current guess for hiddens based on U
for i in range(self.layers):
if i%2 == 0:
log.maybeLog(self.logger, "Using {0!s} and {1!s}".format(self.recurrent_to_gsn_weights_list[(i+1)/2],self.bias_list[i+1]))
h_t = T.concatenate([self.hidden_activation(self.bias_list[i+1] + T.dot(u_tm1, self.recurrent_to_gsn_weights_list[(i+1)/2])) for i in range(self.layers) if i%2 == 0],axis=0)
generate = x_t is None
if generate:
pass
# Make a GSN to update U
# chain, hs = gsn.build_gsn(x_t, weights_list, bias_list, add_noise, state.noiseless_h1, state.hidden_add_noise_sigma, state.input_salt_and_pepper, state.input_sampling, MRG, visible_activation, hidden_activation, walkbacks, logger)
# htop_t = hs[-1]
# denoised_x_t = chain[-1]
# Update U
# ua_t = T.dot(denoised_x_t, W_x_u) + T.dot(htop_t, W_h_u) + T.dot(u_tm1, W_u_u) + recurrent_bias
ua_t = T.dot(x_t, self.W_x_u) + T.dot(u_tm1, self.W_u_u) + self.recurrent_bias
u_t = self.recurrent_hidden_activation(ua_t)
return None if generate else [ua_t, u_t, h_t]
log.maybeLog(self.logger, "\nCreating recurrent step scan.")
# For training, the deterministic recurrence is used to compute all the
# {h_t, 1 <= t <= T} given Xs. Conditional GSNs can then be trained
# in batches using those parameters.
u0 = T.zeros((self.recurrent_hidden_size,)) # initial value for the RNN hidden units
(ua, u, h_t), updates_recurrent = theano.scan(fn=lambda x_t, u_tm1, *_: recurrent_step(x_t, u_tm1, True),
sequences=self.Xs,
outputs_info=[None, u0, None],
non_sequences=self.params)
log.maybeLog(self.logger, "Now for reconstruction sample without noise")
(_, _, h_t_recon), updates_recurrent_recon = theano.scan(fn=lambda x_t, u_tm1, *_: recurrent_step(x_t, u_tm1, False),
sequences=self.Xs,
outputs_info=[None, u0, None],
non_sequences=self.params)
# put together the hiddens list
h_list = [T.zeros_like(self.Xs)]
for layer, w in enumerate(self.weights_list):
if layer%2 != 0:
h_list.append(T.zeros_like(T.dot(h_list[-1], w)))
else:
h_list.append((h_t.T[(layer/2)*self.hidden_size:(layer/2+1)*self.hidden_size]).T)
h_list_recon = [T.zeros_like(self.Xs)]
for layer, w in enumerate(self.weights_list):
if layer%2 != 0:
h_list_recon.append(T.zeros_like(T.dot(h_list_recon[-1], w)))
else:
h_list_recon.append((h_t_recon.T[(layer/2)*self.hidden_size:(layer/2+1)*self.hidden_size]).T)
#with noise
_, _, cost, show_cost, error = GSN.build_gsn_given_hiddens(self.Xs, h_list, self.weights_list, self.bias_list, True, self.noiseless_h1, self.hidden_add_noise_sigma, self.input_salt_and_pepper, self.input_sampling, self.MRG, self.visible_activation, self.hidden_activation, self.walkbacks, self.cost_function)
#without noise for reconstruction
x_sample_recon, _, _, recon_show_cost, _ = GSN.build_gsn_given_hiddens(self.Xs, h_list_recon, self.weights_list, self.bias_list, False, self.noiseless_h1, self.hidden_add_noise_sigma, self.input_salt_and_pepper, self.input_sampling, self.MRG, self.visible_activation, self.hidden_activation, self.walkbacks, self.cost_function)
updates_train = updates_recurrent
updates_cost = updates_recurrent
#############
# COSTS #
#############
log.maybeLog(self.logger, '\nCost w.r.t p(X|...) at every step in the graph')
start_functions_time = time.time()
# if we are not using Hessian-free training create the normal sgd functions
if not self.hessian_free:
gradient = T.grad(cost, self.params)
gradient_buffer = [theano.shared(numpy.zeros(param.get_value().shape, dtype='float32')) for param in self.params]
m_gradient = [self.momentum * gb + (cast32(1) - self.momentum) * g for (gb, g) in zip(gradient_buffer, gradient)]
param_updates = [(param, param - self.learning_rate * mg) for (param, mg) in zip(self.params, m_gradient)]
gradient_buffer_updates = zip(gradient_buffer, m_gradient)
updates = OrderedDict(param_updates + gradient_buffer_updates)
updates_train.update(updates)
log.maybeLog(self.logger, "rnn-gsn learn...")
self.f_learn = theano.function(inputs = [self.Xs],
updates = updates_train,
outputs = [show_cost, error],
on_unused_input='warn',
name='rnngsn_f_learn')
log.maybeLog(self.logger, "rnn-gsn cost...")
self.f_cost = theano.function(inputs = [self.Xs],
updates = updates_cost,
outputs = [show_cost, error],
on_unused_input='warn',
name='rnngsn_f_cost')
log.maybeLog(self.logger, "Training/cost functions done.")
# Denoise some numbers : show number, noisy number, predicted number, reconstructed number
log.maybeLog(self.logger, "Creating graph for noisy reconstruction function at checkpoints during training.")
self.f_recon = theano.function(inputs=[self.Xs],
outputs=[x_sample_recon[-1], recon_show_cost],
name='rnngsn_f_recon')
# a function to add salt and pepper noise
self.f_noise = theano.function(inputs = [self.X],
outputs = salt_and_pepper(self.X, self.input_salt_and_pepper),
name='rnngsn_f_noise')
# Sampling functions
log.maybeLog(self.logger, "Creating sampling function...")
if self.layers == 1:
self.f_sample = theano.function(inputs = [X_sample],
outputs = visible_pX_chain[-1],
name='rnngsn_f_sample_single_layer')
else:
self.f_sample = theano.function(inputs = self.network_state_input,
outputs = self.network_state_output + visible_pX_chain,
on_unused_input='warn',
name='rnngsn_f_sample')
log.maybeLog(self.logger, "Done compiling all functions.")
compilation_time = time.time() - start_functions_time
# Show the compile time with appropriate easy-to-read units.
log.maybeLog(self.logger, "Total compilation time took "+make_time_units_string(compilation_time)+".\n\n")
def __init__(self, train_X=None, train_Y=None, valid_X=None, valid_Y=None, test_X=None, test_Y=None, args=None, logger=None):
# Output logger
self.logger = logger
self.outdir = args.get("output_path", defaults["output_path"])
if self.outdir[-1] != '/':
self.outdir = self.outdir+'/'
data.mkdir_p(self.outdir)
# Configuration
config_filename = self.outdir+'config'
logger.log('Saving config')
with open(config_filename, 'w') as f:
f.write(str(args))
# Input data - make sure it is a list of shared datasets if it isn't. THIS WILL KEEP 'NONE' AS 'NONE' no need to worry :)
self.train_X = raise_to_list(train_X)
self.train_Y = raise_to_list(train_Y)
self.valid_X = raise_to_list(valid_X)
self.valid_Y = raise_to_list(valid_Y)
self.test_X = raise_to_list(test_X)
self.test_Y = raise_to_list(test_Y)
# variables from the dataset that are used for initialization and image reconstruction
if self.train_X is None:
self.N_input = args.get("input_size")
if args.get("input_size") is None:
raise AssertionError("Please either specify input_size in the arguments or provide an example train_X for input dimensionality.")
else:
self.N_input = self.train_X[0].get_value(borrow=True).shape[1]
self.is_image = args.get('is_image', defaults['is_image'])
if self.is_image:
(_h, _w) = closest_to_square_factors(self.N_input)
self.image_width = args.get('width', _w)
self.image_height = args.get('height', _h)
#######################################
# Network and training specifications #
#######################################
self.layers = args.get('layers', defaults['layers']) # number hidden layers
self.walkbacks = args.get('walkbacks', defaults['walkbacks']) # number of walkbacks
self.learning_rate = theano.shared(cast32(args.get('learning_rate', defaults['learning_rate']))) # learning rate
self.init_learn_rate = cast32(args.get('learning_rate', defaults['learning_rate']))
self.momentum = theano.shared(cast32(args.get('momentum', defaults['momentum']))) # momentum term
self.annealing = cast32(args.get('annealing', defaults['annealing'])) # exponential annealing coefficient
self.noise_annealing = cast32(args.get('noise_annealing', defaults['noise_annealing'])) # exponential noise annealing coefficient
self.batch_size = args.get('batch_size', defaults['batch_size'])
self.gsn_batch_size = args.get('gsn_batch_size', defaults['gsn_batch_size'])
self.n_epoch = args.get('n_epoch', defaults['n_epoch'])
self.early_stop_threshold = args.get('early_stop_threshold', defaults['early_stop_threshold'])
self.early_stop_length = args.get('early_stop_length', defaults['early_stop_length'])
self.save_frequency = args.get('save_frequency', defaults['save_frequency'])
self.noiseless_h1 = args.get('noiseless_h1', defaults["noiseless_h1"])
self.hidden_add_noise_sigma = theano.shared(cast32(args.get('hidden_add_noise_sigma', defaults["hidden_add_noise_sigma"])))
self.input_salt_and_pepper = theano.shared(cast32(args.get('input_salt_and_pepper', defaults["input_salt_and_pepper"])))
self.input_sampling = args.get('input_sampling', defaults["input_sampling"])
self.vis_init = args.get('vis_init', defaults['vis_init'])
self.initialize_gsn = args.get('initialize_gsn', defaults['initialize_gsn'])
self.hessian_free = args.get('hessian_free', defaults['hessian_free'])
self.hidden_size = args.get('hidden_size', defaults['hidden_size'])
self.layer_sizes = [self.N_input] + [self.hidden_size] * self.layers # layer sizes, from h0 to hK (h0 is the visible layer)
self.recurrent_hidden_size = args.get('recurrent_hidden_size', defaults['recurrent_hidden_size'])
self.f_recon = None
self.f_noise = None
# Activation functions!
# For the GSN:
if args.get('hidden_activation') is not None:
log.maybeLog(self.logger, 'Using specified activation for GSN hiddens')
self.hidden_activation = args.get('hidden_activation')
elif args.get('hidden_act') is not None:
self.hidden_activation = get_activation_function(args.get('hidden_act'))
log.maybeLog(self.logger, 'Using {0!s} activation for GSN hiddens'.format(args.get('hidden_act')))
else:
log.maybeLog(self.logger, "Using default activation for GSN hiddens")
self.hidden_activation = defaults['hidden_activation']
# For the RNN:
if args.get('recurrent_hidden_activation') is not None:
log.maybeLog(self.logger, 'Using specified activation for RNN hiddens')
self.recurrent_hidden_activation = args.get('recurrent_hidden_activation')
elif args.get('recurrent_hidden_act') is not None:
self.recurrent_hidden_activation = get_activation_function(args.get('recurrent_hidden_act'))
log.maybeLog(self.logger, 'Using {0!s} activation for RNN hiddens'.format(args.get('recurrent_hidden_act')))
else:
log.maybeLog(self.logger, "Using default activation for RNN hiddens")
self.recurrent_hidden_activation = defaults['recurrent_hidden_activation']
# Visible layer activation
if args.get('visible_activation') is not None:
log.maybeLog(self.logger, 'Using specified activation for visible layer')
self.visible_activation = args.get('visible_activation')
elif args.get('visible_act') is not None:
self.visible_activation = get_activation_function(args.get('visible_act'))
log.maybeLog(self.logger, 'Using {0!s} activation for visible layer'.format(args.get('visible_act')))
else:
log.maybeLog(self.logger, 'Using default activation for visible layer')
self.visible_activation = defaults['visible_activation']
# Cost function!
if args.get('cost_function') is not None:
log.maybeLog(self.logger, '\nUsing specified cost function for GSN training\n')
self.cost_function = args.get('cost_function')
elif args.get('cost_funct') is not None:
self.cost_function = get_cost_function(args.get('cost_funct'))
log.maybeLog(self.logger, 'Using {0!s} for cost function'.format(args.get('cost_funct')))
else:
log.maybeLog(self.logger, '\nUsing default cost function for GSN training\n')
self.cost_function = defaults['cost_function']
############################
# Theano variables and RNG #
############################
self.X = T.fmatrix('X') #single (batch) for training gsn
self.Xs = T.fmatrix('Xs') #sequence for training rnn-gsn
self.MRG = RNG_MRG.MRG_RandomStreams(1)
###############
# Parameters! #
###############
#gsn
self.weights_list = [get_shared_weights(self.layer_sizes[i], self.layer_sizes[i+1], name="W_{0!s}_{1!s}".format(i,i+1)) for i in range(self.layers)] # initialize each layer to uniform sample from sqrt(6. / (n_in + n_out))
self.bias_list = [get_shared_bias(self.layer_sizes[i], name='b_'+str(i)) for i in range(self.layers + 1)] # initialize each layer to 0's.
#recurrent
self.recurrent_to_gsn_weights_list = [get_shared_weights(self.recurrent_hidden_size, self.layer_sizes[layer], name="W_u_h{0!s}".format(layer)) for layer in range(self.layers+1) if layer%2 != 0]
self.W_u_u = get_shared_weights(self.recurrent_hidden_size, self.recurrent_hidden_size, name="W_u_u")
self.W_x_u = get_shared_weights(self.N_input, self.recurrent_hidden_size, name="W_x_u")
self.recurrent_bias = get_shared_bias(self.recurrent_hidden_size, name='b_u')
#lists for use with gradients
self.gsn_params = self.weights_list + self.bias_list
self.u_params = [self.W_u_u, self.W_x_u, self.recurrent_bias]
self.params = self.gsn_params + self.recurrent_to_gsn_weights_list + self.u_params
###########################################################
# load initial parameters of gsn #
###########################################################
self.train_gsn_first = False
if self.initialize_gsn:
params_to_load = 'gsn_params.pkl'
if not os.path.isfile(params_to_load):
self.train_gsn_first = True
else:
log.maybeLog(self.logger, "\nLoading existing GSN parameters\n")
loaded_params = cPickle.load(open(params_to_load,'r'))
[p.set_value(lp.get_value(borrow=False)) for lp, p in zip(loaded_params[:len(self.weights_list)], self.weights_list)]
[p.set_value(lp.get_value(borrow=False)) for lp, p in zip(loaded_params[len(self.weights_list):], self.bias_list)]
if self.initialize_gsn:
self.gsn_args = {'weights_list': self.weights_list,
'bias_list': self.bias_list,
'hidden_activation': self.hidden_activation,
'visible_activation': self.visible_activation,
'cost_function': self.cost_function,
'layers': self.layers,
'walkbacks': self.walkbacks,
'hidden_size': self.hidden_size,
'learning_rate': args.get('learning_rate', defaults['learning_rate']),
'momentum': args.get('momentum', defaults['momentum']),
'annealing': self.annealing,
'noise_annealing': self.noise_annealing,
'batch_size': self.gsn_batch_size,
'n_epoch': self.n_epoch,
'early_stop_threshold': self.early_stop_threshold,
'early_stop_length': self.early_stop_length,
'save_frequency': self.save_frequency,
'noiseless_h1': self.noiseless_h1,
'hidden_add_noise_sigma': args.get('hidden_add_noise_sigma', defaults['hidden_add_noise_sigma']),
'input_salt_and_pepper': args.get('input_salt_and_pepper', defaults['input_salt_and_pepper']),
'input_sampling': self.input_sampling,
'vis_init': self.vis_init,
'output_path': self.outdir+'gsn/',
'is_image': self.is_image,
'input_size': self.N_input
}
############
# Sampling #
############
# the input to the sampling function
X_sample = T.fmatrix("X_sampling")
self.network_state_input = [X_sample] + [T.fmatrix("H_sampling_"+str(i+1)) for i in range(self.layers)]
# "Output" state of the network (noisy)
# initialized with input, then we apply updates
self.network_state_output = [X_sample] + self.network_state_input[1:]
visible_pX_chain = []
# ONE update
_add_noise = True
log.maybeLog(self.logger, "Performing one walkback in network state sampling.")
GSN.update_layers(self.network_state_output,
self.weights_list,
self.bias_list,
visible_pX_chain,
_add_noise,
self.noiseless_h1,
self.hidden_add_noise_sigma,
self.input_salt_and_pepper,
self.input_sampling,
self.MRG,
self.visible_activation,
self.hidden_activation,
self.logger)
#############################################
# Build the graphs for the RNN-GSN #
#############################################
# If `x_t` is given, deterministic recurrence to compute the u_t. Otherwise, first generate
def recurrent_step(x_t, u_tm1, add_noise):
# Make current guess for hiddens based on U
for i in range(self.layers):
if i%2 == 0:
log.maybeLog(self.logger, "Using {0!s} and {1!s}".format(self.recurrent_to_gsn_weights_list[(i+1)/2],self.bias_list[i+1]))
h_t = T.concatenate([self.hidden_activation(self.bias_list[i+1] + T.dot(u_tm1, self.recurrent_to_gsn_weights_list[(i+1)/2])) for i in range(self.layers) if i%2 == 0],axis=0)
generate = x_t is None
if generate:
pass
# Make a GSN to update U
# chain, hs = gsn.build_gsn(x_t, weights_list, bias_list, add_noise, state.noiseless_h1, state.hidden_add_noise_sigma, state.input_salt_and_pepper, state.input_sampling, MRG, visible_activation, hidden_activation, walkbacks, logger)
# htop_t = hs[-1]
# denoised_x_t = chain[-1]
# Update U
# ua_t = T.dot(denoised_x_t, W_x_u) + T.dot(htop_t, W_h_u) + T.dot(u_tm1, W_u_u) + recurrent_bias
ua_t = T.dot(x_t, self.W_x_u) + T.dot(u_tm1, self.W_u_u) + self.recurrent_bias
u_t = self.recurrent_hidden_activation(ua_t)
return None if generate else [ua_t, u_t, h_t]
log.maybeLog(self.logger, "\nCreating recurrent step scan.")
# For training, the deterministic recurrence is used to compute all the
# {h_t, 1 <= t <= T} given Xs. Conditional GSNs can then be trained
# in batches using those parameters.
u0 = T.zeros((self.recurrent_hidden_size,)) # initial value for the RNN hidden units
(ua, u, h_t), updates_recurrent = theano.scan(fn=lambda x_t, u_tm1, *_: recurrent_step(x_t, u_tm1, True),
sequences=self.Xs,
outputs_info=[None, u0, None],
non_sequences=self.params)
log.maybeLog(self.logger, "Now for reconstruction sample without noise")
(_, _, h_t_recon), updates_recurrent_recon = theano.scan(fn=lambda x_t, u_tm1, *_: recurrent_step(x_t, u_tm1, False),
sequences=self.Xs,
outputs_info=[None, u0, None],
non_sequences=self.params)
# put together the hiddens list
h_list = [T.zeros_like(self.Xs)]
for layer, w in enumerate(self.weights_list):
if layer%2 != 0:
h_list.append(T.zeros_like(T.dot(h_list[-1], w)))
else:
h_list.append((h_t.T[(layer/2)*self.hidden_size:(layer/2+1)*self.hidden_size]).T)
h_list_recon = [T.zeros_like(self.Xs)]
for layer, w in enumerate(self.weights_list):
if layer%2 != 0:
h_list_recon.append(T.zeros_like(T.dot(h_list_recon[-1], w)))
else:
h_list_recon.append((h_t_recon.T[(layer/2)*self.hidden_size:(layer/2+1)*self.hidden_size]).T)
#with noise
_, _, cost, show_cost, error = GSN.build_gsn_given_hiddens(self.Xs, h_list, self.weights_list, self.bias_list, True, self.noiseless_h1, self.hidden_add_noise_sigma, self.input_salt_and_pepper, self.input_sampling, self.MRG, self.visible_activation, self.hidden_activation, self.walkbacks, self.cost_function)
#without noise for reconstruction
x_sample_recon, _, _, recon_show_cost, _ = GSN.build_gsn_given_hiddens(self.Xs, h_list_recon, self.weights_list, self.bias_list, False, self.noiseless_h1, self.hidden_add_noise_sigma, self.input_salt_and_pepper, self.input_sampling, self.MRG, self.visible_activation, self.hidden_activation, self.walkbacks, self.cost_function)
updates_train = updates_recurrent
updates_cost = updates_recurrent
#############
# COSTS #
#############
log.maybeLog(self.logger, '\nCost w.r.t p(X|...) at every step in the graph')
start_functions_time = time.time()
# if we are not using Hessian-free training create the normal sgd functions
if not self.hessian_free:
gradient = T.grad(cost, self.params)
gradient_buffer = [theano.shared(numpy.zeros(param.get_value().shape, dtype='float32')) for param in self.params]
m_gradient = [self.momentum * gb + (cast32(1) - self.momentum) * g for (gb, g) in zip(gradient_buffer, gradient)]
param_updates = [(param, param - self.learning_rate * mg) for (param, mg) in zip(self.params, m_gradient)]
gradient_buffer_updates = zip(gradient_buffer, m_gradient)
updates = OrderedDict(param_updates + gradient_buffer_updates)
updates_train.update(updates)
log.maybeLog(self.logger, "rnn-gsn learn...")
self.f_learn = theano.function(inputs = [self.Xs],
updates = updates_train,
outputs = [show_cost, error],
on_unused_input='warn',
name='rnngsn_f_learn')
log.maybeLog(self.logger, "rnn-gsn cost...")
self.f_cost = theano.function(inputs = [self.Xs],
updates = updates_cost,
outputs = [show_cost, error],
on_unused_input='warn',
name='rnngsn_f_cost')
log.maybeLog(self.logger, "Training/cost functions done.")
# Denoise some numbers : show number, noisy number, predicted number, reconstructed number
log.maybeLog(self.logger, "Creating graph for noisy reconstruction function at checkpoints during training.")
self.f_recon = theano.function(inputs=[self.Xs],
outputs=[x_sample_recon[-1], recon_show_cost],
name='rnngsn_f_recon')
# a function to add salt and pepper noise
self.f_noise = theano.function(inputs = [self.X],
outputs = salt_and_pepper(self.X, self.input_salt_and_pepper),
name='rnngsn_f_noise')
# Sampling functions
log.maybeLog(self.logger, "Creating sampling function...")
if self.layers == 1:
self.f_sample = theano.function(inputs = [X_sample],
outputs = visible_pX_chain[-1],
name='rnngsn_f_sample_single_layer')
else:
self.f_sample = theano.function(inputs = self.network_state_input,
outputs = self.network_state_output + visible_pX_chain,
on_unused_input='warn',
name='rnngsn_f_sample')
log.maybeLog(self.logger, "Done compiling all functions.")
compilation_time = time.time() - start_functions_time
# Show the compile time with appropriate easy-to-read units.
log.maybeLog(self.logger, "Total compilation time took "+make_time_units_string(compilation_time)+".\n\n")
def plot_samples(self, epoch_number="", leading_text="", n_samples=400):
to_sample = time.time()
initial = self.test_X.get_value(borrow=True)[:1]
rand_idx = numpy.random.choice(range(self.test_X.get_value(borrow=True).shape[0]))
rand_init = self.test_X.get_value(borrow=True)[rand_idx:rand_idx+1]
V, _ = self.sample(initial, n_samples)
rand_V, _ = self.sample(rand_init, n_samples)
img_samples = PIL.Image.fromarray(tile_raster_images(V, (self.image_height, self.image_width), closest_to_square_factors(n_samples)))
rand_img_samples = PIL.Image.fromarray(tile_raster_images(rand_V, (self.image_height, self.image_width), closest_to_square_factors(n_samples)))
fname = self.outdir+leading_text+'samples_epoch_'+str(epoch_number)+'.png'
img_samples.save(fname)
rfname = self.outdir+leading_text+'samples_rand_epoch_'+str(epoch_number)+'.png'
rand_img_samples.save(rfname)
log.maybeLog(self.logger, 'Took ' + make_time_units_string(time.time() - to_sample) + ' to sample '+str(n_samples*2)+' numbers')
def plot_samples(self, epoch_number="", leading_text="", n_samples=400):
to_sample = time.time()
initial = self.test_X.get_value(borrow=True)[:1]
rand_idx = numpy.random.choice(range(self.test_X.get_value(borrow=True).shape[0]))
rand_init = self.test_X.get_value(borrow=True)[rand_idx:rand_idx+1]
V, _ = self.sample(initial, n_samples)
rand_V, _ = self.sample(rand_init, n_samples)
img_samples = PIL.Image.fromarray(tile_raster_images(V, (self.image_height, self.image_width), closest_to_square_factors(n_samples)))
rand_img_samples = PIL.Image.fromarray(tile_raster_images(rand_V, (self.image_height, self.image_width), closest_to_square_factors(n_samples)))
fname = self.outdir+leading_text+'samples_epoch_'+str(epoch_number)+'.png'
img_samples.save(fname)
rfname = self.outdir+leading_text+'samples_rand_epoch_'+str(epoch_number)+'.png'
rand_img_samples.save(rfname)
log.maybeLog(self.logger, 'Took ' + make_time_units_string(time.time() - to_sample) + ' to sample '+str(n_samples*2)+' numbers')