'maskN' : False}
subgroups = { 'zebra' : '.*zebra.*',
'gazelle' : '.*gazelle.*'}
if testing:
W.setup_clustering(mode='split_by_subgroups', infiles_pattern='test*-clean.fastq.bgzf',
default_params=default_params, subgroups=subgroups)
# W.setup_clustering(mode='split_by_tags', infiles_pattern='test*-clean.fastq.bgzf',
# default_params=default_params)
else:
W.setup_clustering(mode='split_by_subgroups', infiles_pattern='lane*-clean.fastq.bgzf',
default_params=default_params, subgroups=subgroups)
# W.setup_clustering(mode='split_by_tags', infiles_pattern='lane*-clean.fastq.bgzf',
# default_params=default_params)
# Varibles to change, 1 dictionary per run
run_parameters = [
{ 'c_thresh' : 1.0},
{ 'c_thresh' : 0.90},
]
W.run_clustering(run_parameters, threads=1)
# Next steps
# Delete all fasta files
