def run(self): self._check_data() for clone, tissue in self.sample_list: self.clone = clone self.tissue = tissue self._run() end_msg(self.q.j_total)
def run(self): if self.explscore_file_ok: self._skip_msg('calling') self._skip_msg('af_calc') self._skip_msg('con_call') self._skip_msg('expl_score') else: self._check_data() jids = [] for clone, tissue in self.sample_list: self.clone = clone self.tissue = tissue jids.append(super()._run()) hold_jid = ','.join(jid for jid in jids if jid != '') self._explscore(hold_jid) self._run_msg('expl_score') end_msg(self.q.j_total)