def main():
parser = argparse.ArgumentParser()
arg = parser.add_argument
arg('--seed', type=int, default=666)
arg('--distributed_backend', type=str, default='ddp')
arg('--num_workers', type=int, default=16)
arg('--gpus', type=int, default=8)
arg('--num_nodes', type=int, default=1)
parser = Model.add_model_specific_args(parser)
args = parser.parse_args()
if args.model_name is None or args.transform_name is None:
raise ValueError('Specify model name and transformation rule')
if args.optimizer_name not in ('sgd', 'adam', 'rmsprop'):
raise (ValueError, 'Please choose optimizer from sgd|adam')
#
init_seed(seed=args.seed)
experiment_name = md5(bytes(str(args), encoding='utf8')).hexdigest()
logger.info(str(args)); logger.info(f'experiment_name={experiment_name}')
tb_logger = TensorBoardLogger(save_dir=RESULT_DIR, name=experiment_name, version=int(time.time()))
checkpoint_callback = pl.callbacks.ModelCheckpoint(filepath=tb_logger.log_dir + "/{epoch:02d}-{auc:.5f}",
monitor='auc', mode='max', save_top_k=3, verbose=True)
# set min_delta negative, b/c there's double run of early-stopping sometimes for v0.7.6
early_stop_callback = pl.callbacks.EarlyStopping(monitor='auc', mode='max', patience=9, #min_delta=-0.000001,
verbose=True)
model = Model(**vars(args))
trainer = pl.Trainer.from_argparse_args(args, checkpoint_callback=checkpoint_callback,
early_stop_callback=early_stop_callback, logger=tb_logger,
# train_percent_check=0.1,
# num_sanity_val_steps=args.gpus,
use_amp=True,
)
trainer.fit(model)
def main():
# loads a lot of default parser values from the 'parser' file
parser = get_parser()
# get args from parser as an object
args = parser.parse_args()
args.device = 'cuda' if args.cuda else 'cpu'
# initialize seeds
utils.init_seed(args.seed)
# print('loader stuff', args)
loader = Loader.IncrementalLoader(args, seed=args.seed)
# print('loader stuff after after', args)
n_inputs, n_outputs, n_tasks = loader.get_dataset_info()
# setup logging
# logging is from 'misc_utils.py' from 'utils' folder
timestamp = utils.get_date_time() # this line is redundant bcz log_dir already takes care of it
args.log_dir, args.tf_dir = utils.log_dir(args, timestamp) # stores args into "training_parameters.json"
# create the model neural net
model = Model.Net(n_inputs, n_outputs, n_tasks, args, innerlr=args.opt_lr, outerlr=args.alpha_init)
# make model cuda-ized if possible
model.net.to(args.device)
# for all the CL baselines
result_val_t, result_val_a, result_test_t, result_test_a, spent_time = life_experience(model, loader, args)
# save results in files or print on terminal
save_results(args, result_val_t, result_val_a, result_test_t, result_test_a, model, spent_time)
def main():
parser = argparse.ArgumentParser(description='Semantic Segmentation')
parser.add_argument('--train_cfg',
type=str,
default='./configs/train_config.yaml',
help='train config path')
args = parser.parse_args()
config_folder = Path(args.train_cfg.strip("/"))
config = load_yaml(config_folder)
init_seed(config['SEED'])
df, train_ids, valid_ids = split_dataset(config['DATA_TRAIN'])
train_dataset = getattribute(config=config,
name_package='TRAIN_DATASET',
df=df,
img_ids=train_ids)
valid_dataset = getattribute(config=config,
name_package='VALID_DATASET',
df=df,
img_ids=valid_ids)
train_dataloader = getattribute(config=config,
name_package='TRAIN_DATALOADER',
dataset=train_dataset)
valid_dataloader = getattribute(config=config,
name_package='VALID_DATALOADER',
dataset=valid_dataset)
model = getattribute(config=config, name_package='MODEL')
criterion = getattribute(config=config, name_package='CRITERION')
optimizer = getattribute(config=config,
name_package='OPTIMIZER',
params=model.parameters())
scheduler = getattribute(config=config,
name_package='SCHEDULER',
optimizer=optimizer)
device = config['DEVICE']
metric_ftns = [accuracy_dice_score]
num_epoch = config['NUM_EPOCH']
gradient_clipping = config['GRADIENT_CLIPPING']
gradient_accumulation_steps = config['GRADIENT_ACCUMULATION_STEPS']
early_stopping = config['EARLY_STOPPING']
validation_frequency = config['VALIDATION_FREQUENCY']
saved_period = config['SAVED_PERIOD']
checkpoint_dir = Path(config['CHECKPOINT_DIR'], type(model).__name__)
checkpoint_dir.mkdir(exist_ok=True, parents=True)
resume_path = config['RESUME_PATH']
learning = Learning(model=model,
optimizer=optimizer,
criterion=criterion,
device=device,
metric_ftns=metric_ftns,
num_epoch=num_epoch,
scheduler=scheduler,
grad_clipping=gradient_clipping,
grad_accumulation_steps=gradient_accumulation_steps,
early_stopping=early_stopping,
validation_frequency=validation_frequency,
save_period=saved_period,
checkpoint_dir=checkpoint_dir,
resume_path=resume_path)
learning.train(tqdm(train_dataloader), tqdm(valid_dataloader))
def main():
parser = argparse.ArgumentParser(description='Semantic Segmentation')
parser.add_argument('--train_cfg',
type=str,
default='./configs/train_config.yaml',
help='train config path')
parser.add_argument('--resume_path',
type=str,
default='./saved/',
help='resume path')
args = parser.parse_args()
config_folder = Path(args.train_cfg.strip("/"))
config = load_yaml(config_folder)
init_seed(config['SEED'])
sub, test_ids = read_data('./data/sample_submission.csv')
test_dataset = getattribute(config=config,
name_package='TEST_DATASET',
df=sub,
img_ids=test_ids)
test_dataloader = getattribute(config=config,
name_package='TEST_DATALOADER',
dataset=test_dataset)
model = getattribute(config=config, name_package='MODEL')
print("Loading checkpoint: {} ...".format(args.resume_path))
checkpoint = torch.load(args.resume_path,
map_location=lambda storage, loc: storage)
model.load_state_dict(checkpoint['state_dict'])
model = model.cuda()
encoded_pixels = []
image_id = 0
for idx, (data, _) in enumerate(tqdm(test_dataloader)):
data = data.cuda()
outputs = model(data)
for batch in outputs:
for probability in batch:
probability = probability.cpu().detach().numpy()
if probability.shape != (350, 525):
probability = cv2.resize(probability,
dsize=(525, 350),
interpolation=cv2.INTER_LINEAR)
predict, num_predict = post_process(
sigmoid(probability), class_params[image_id % 4][0],
class_params[image_id % 4][1])
if num_predict == 0:
encoded_pixels.append('')
else:
r = mask2rle(predict)
encoded_pixels.append(r)
image_id += 1
sub['EncodedPixels'] = encoded_pixels
sub.to_csv('submission.csv',
columns=['Image_Label', 'EncodedPixels'],
index=False)
def test_trainer_8(self):
init_seed(options={"seed": 0})
# learning rate scheduler step
lr_scheduler_step = 15
num_support_tr = 6
num_query_tr = 12
num_samples = num_support_tr + num_query_tr
# number of random classes per episode for training
# this should be equal or less than the unique number
# of classes in the dataset
classes_per_it = 3
iterations = 10
proto_net = ProtoNetTUF(encoder=linear(in_features=2, out_features=3))
train_engine = TrainEngine(model=proto_net)
# optimizer to be used for learning
optimizer = optim.Adam(params=proto_net.parameters(),
lr=0.1,
weight_decay=0.001)
# how to reduce the learning rate
lr_scheduler = torch.optim.lr_scheduler.StepLR(
optimizer=optimizer,
gamma=0.01,
step_size=lr_scheduler_step,
verbose=True)
train_loader = TUFDataset(filename=Path("./test_data/train_data.csv"),
dataset_type="train")
sampler = BatchSampler(labels=train_loader.labels,
classes_per_it=classes_per_it,
num_samples=num_samples,
iterations=iterations,
mode="train")
dataloader = torch.utils.data.DataLoader(train_loader,
batch_sampler=sampler)
options = {
"optimizer": optimizer,
"lr_scheduler": lr_scheduler,
"max_epochs": 1,
"device": "cpu",
"sample_loader": dataloader,
"iterations": iterations,
"num_support_tr": num_support_tr
}
train_engine.train(options=options)
def test(configuration: dict) -> None:
device = configuration['device']
if device == 'gpu' and not torch.cuda.is_available():
print(
"{0} You specified CUDA as device but PyTorch configuration does not support CUDA"
.format(WARNING))
print("{0} Setting device to cpu".format(WARNING))
configuration['device'] = 'cpu'
# initialize seed for random generation utilities
init_seed(options=configuration)
test_model_path = Path(configuration["save_model_path"] + "/" +
configuration["model_name"] + "/" +
configuration["test_model"])
model = ProtoNetTUF.build_network(encoder=linear_with_softmax(
in_features=configuration["in_features"],
out_features=len(configuration["classes"])),
options=configuration)
model.load_state_dict(torch.load(test_model_path))
train_dataset = TUFDataset(filename=Path(configuration["test_dataset"]),
dataset_type="test",
classes=configuration["classes"])
print(f"{INFO} Test dataset size {len(train_dataset)} ")
# number of samples for training
# num_support_tr is the number of support points per class
# num_query_tr is the number of query points per class
num_samples = configuration["num_support_tr"] + configuration[
"num_query_tr"]
sampler = BatchSampler(labels=train_dataset.labels,
classes_per_it=len(configuration["classes"]),
num_samples=num_samples,
iterations=configuration["iterations"],
mode="train")
dataloader = torch.utils.data.DataLoader(train_dataset,
batch_sampler=sampler)
'''
def train(configuration: dict) -> None:
dirs = os.listdir(configuration["save_model_path"])
if configuration["model_name"] in dirs:
raise ValueError(f"Directory {configuration['model_name']} exists")
# create directory if it doesnt exist
output_path = Path(configuration["save_model_path"] + "/" +
configuration["model_name"])
# create the output directory
os.mkdir(path=output_path)
configuration["save_model_path"] = str(output_path)
with open(output_path / "config.json", 'w', newline="\n") as fh:
# save the configuration in the output
json.dump(configuration, fh)
device = configuration['device']
if device == 'gpu' and not torch.cuda.is_available():
print(
"{0} You specified CUDA as device but PyTorch configuration does not support CUDA"
.format(WARNING))
print("{0} Setting device to cpu".format(WARNING))
configuration['device'] = 'cpu'
# initialize seed for random generation utilities
init_seed(options=configuration)
# the model to train
model = ProtoNetTUF.build_network(encoder=convolution_with_linear_softmax(
in_channels=2,
out_channels=1,
kernel_size=1,
in_features=configuration["in_features"],
out_features=len(configuration["classes"])),
options=configuration)
# initialize the optimizer
optim = torch.optim.Adam(
params=model.parameters(),
lr=configuration["optimizer"]["lr"],
weight_decay=configuration["optimizer"]["weight_decay"])
# initialize scheduler for learning rate decay
# Decays the learning rate of each parameter group by gamma every step_size epochs.
# Notice that such decay can happen simultaneously with other changes
# to the learning rate from outside this scheduler.
# When last_epoch=-1, sets initial lr as lr.
lr_scheduler = torch.optim.lr_scheduler.StepLR(
optimizer=optim,
gamma=configuration["lr_scheduler"]["gamma"],
step_size=configuration["lr_scheduler"]["step_size"])
train_dataset = TUFDataset(filename=Path(configuration["train_dataset"]),
dataset_type="train",
classes=configuration["classes"])
print(f"{INFO} Training dataset size {len(train_dataset)} ")
# number of samples for training
# num_support_tr is the number of support points per class
# num_query_tr is the number of query points per class
num_samples = configuration["num_support_tr"] + configuration[
"num_query_tr"]
sampler = BatchSampler(labels=train_dataset.labels,
classes_per_it=len(configuration["classes"]),
num_samples=num_samples,
iterations=configuration["iterations"],
mode="train")
dataloader = torch.utils.data.DataLoader(train_dataset,
batch_sampler=sampler)
# options for the training engine
options = TrainEngine.build_options(
optimizer=optim,
lr_scheduler=lr_scheduler,
max_epochs=configuration["max_epochs"],
iterations=configuration["iterations"],
device=configuration["device"],
sample_loader=dataloader,
num_support_tr=configuration["num_support_tr"])
options = extend_options_from_config(configuration=configuration,
options=options)
if configuration["validate"]:
num_support_validation = configuration["num_support_validation"]
num_query_validation = configuration["num_query_validation"]
num_samples_validation = num_query_validation + num_support_validation
print(f"{INFO} Number of samples validation {num_samples_validation}")
validation_dataset = TUFDataset(filename=Path(
configuration["validate_dataset"]),
dataset_type="validate",
classes=configuration["classes"])
print(f"{INFO} Validation dataset size {len(validation_dataset)} ")
val_sampler = BatchSampler(labels=validation_dataset.labels,
classes_per_it=len(
configuration["classes"]),
num_samples=num_samples_validation,
iterations=configuration["iterations"],
mode="validate")
validation_dataloader = torch.utils.data.DataLoader(
validation_dataset, batch_sampler=val_sampler)
options["validation_dataloader"] = validation_dataloader
options["num_support_validation"] = configuration[
"num_support_validation"]
# train the model
engine = TrainEngine(model=model)
engine.train(options=options)
engine_state = engine.state
x = [epoch for epoch in range(configuration["max_epochs"])]
train_loss = engine_state["average_train_loss"]
validation_loss = engine_state["average_validation_loss"]
plt.plot(x, train_loss, 'r*', label="Train loss")
plt.plot(x, validation_loss, 'bo', label="Validation loss")
plt.xlabel("Epoch")
plt.ylabel("Average Loss")
plt.legend(loc="upper right")
plt.title(
"Train vs Validation loss. $\eta=${0}, Iterations/epoch {1}".format(
configuration["optimizer"]["lr"], configuration["iterations"]))
plt.savefig(
Path(configuration["save_model_path"] + "/" +
"train_validation_loss.png"))
plt.close()
train_acc = engine_state["average_train_acc"]
validation_acc = engine_state["average_validation_acc"]
plt.plot(x, train_acc, 'r*', label="Train accuracy")
plt.plot(x, validation_acc, 'bo', label="Validation accuracy")
plt.xlabel("Epoch")
plt.ylabel("Average Accuracy")
plt.legend(loc="upper right")
plt.title("Train vs Validation accuracy. $\eta=${0}, Iterations/epoch {1}".
format(configuration["optimizer"]["lr"],
configuration["iterations"]))
plt.savefig(
Path(configuration["save_model_path"] + "/" +
"train_validation_accuracy.png"))
'caching feature extractors and '
'language index mapping')
parser.add_argument('-vsizes',
default=[2000, 2000, 12000, 12000, 12000],
type=int,
nargs='+',
help="Vocabulary sizes, "
"for 1-gram, 2-gram, 3-gram, 4-gram and word features,"
" respectively. Default setting is named as 'sm'.")
# parser.add_argument('-vsizes', default=[10000, 10000, 50000, 50000, 50000], type=int, nargs='+',
# help="Vocabulary sizes, "
# "for 1-gram, 2-gram, 3-gram, 4-gram and word features,"
# " respectively. Default setting is named as 'lg'.")
args = parser.parse_args()
utils.init_seed(args.seed)
utils.log(f'Params: {str(args)}')
if os.path.exists(args.mdir):
utils.log(f'{args.mdir} already exists. '
f'Input \'yes\' to overwrite, '
f'or \'no\' to load and train:')
key = input()
if key == 'yes':
os.system(f'rm -rf {args.mdir}')
os.makedirs(args.mdir)
elif key == 'no':
pass
else:
exit()
else:
def main():
parser = argparse.ArgumentParser(description='Semantic Segmentation')
parser.add_argument('--train_cfg',
type=str,
default='./configs/train.yaml',
help='train config path')
args = parser.parse_args()
config_folder = Path(args.train_cfg.strip("/"))
config = load_yaml(config_folder)
init_seed(config['SEED'])
image_datasets = {
x: vinDataset(root_dir=config['ROOT_DIR'],
file_name=config['FILE_NAME'],
num_triplet=config['NUM_TRIPLET'],
phase=x)
for x in ['train', 'valid']
}
dataloaders = {
x: torch.utils.data.DataLoader(image_datasets[x],
batch_size=config['BATCH_SIZE'],
shuffle=True,
num_workers=4,
pin_memory=True)
for x in ['train', 'valid']
}
model = getattribute(config=config, name_package='MODEL')
criterion = getattribute(config=config, name_package='CRITERION')
metric_ftns = [accuracy_score]
optimizer = getattribute(config=config,
name_package='OPTIMIZER',
params=model.parameters())
scheduler = getattribute(config=config,
name_package='SCHEDULER',
optimizer=optimizer)
device = config['DEVICE']
num_epoch = config['NUM_EPOCH']
gradient_clipping = config['GRADIENT_CLIPPING']
gradient_accumulation_steps = config['GRADIENT_ACCUMULATION_STEPS']
early_stopping = config['EARLY_STOPPING']
validation_frequency = config['VALIDATION_FREQUENCY']
saved_period = config['SAVED_PERIOD']
checkpoint_dir = Path(config['CHECKPOINT_DIR'], type(model).__name__)
checkpoint_dir.mkdir(exist_ok=True, parents=True)
resume_path = config['RESUME_PATH']
learning = Learning(model=model,
criterion=criterion,
metric_ftns=metric_ftns,
optimizer=optimizer,
device=device,
num_epoch=num_epoch,
scheduler=scheduler,
grad_clipping=gradient_clipping,
grad_accumulation_steps=gradient_accumulation_steps,
early_stopping=early_stopping,
validation_frequency=validation_frequency,
save_period=saved_period,
checkpoint_dir=checkpoint_dir,
resume_path=resume_path)
learning.train(tqdm(dataloaders['train']), tqdm(dataloaders['valid']))
def calc_criterions(y_pred, y_true):
metric_names = ['log_loss', 'recall', 'far']
results = {key: 0 for key in metric_names}
results['log_loss'] = log_loss(y_true, y_pred)
results['recall'] = recall_rate(preds, labels).item()
results['far'] = false_detection_rate(preds, labels).item()
return results
if __name__ == '__main__':
args = baseline_args().parse_args()
init_seed(args)
eeg_conf = set_eeg_conf(args)
dataloaders = {
phase: set_dataloader(args, eeg_conf, phase, label_func, device='cpu')
for phase in ['train', 'val', 'test']
}
models = None
for phase in ['train', 'val']:
for i, (inputs, labels) in tqdm(enumerate(dataloaders[phase]),
total=len(dataloaders[phase])):
models, preds = model_baseline(models, inputs, labels)
if args.test:
# test phase
model = nets.GNIMLP(idim=opt.idim,
nclasses=nclasses,
capacity=opt.capacity,
criterion=nn.CrossEntropyLoss(),
add_per=opt.add_per,
retain_ratio=opt.retain_ratio,
device=device).to(device)
if opt.net == 'gsmlp':
model = nets.GSMLP(idim=opt.idim,
nclasses=nclasses,
capacity=opt.capacity,
criterion=nn.CrossEntropyLoss(),
bsz_sampling=opt.bsz_sampling).to(device)
utils.init_seed(opt.seed)
utils.init_model(model)
optimizer = optim.Adam(params=filter(lambda p: p.requires_grad,
model.parameters()),
lr=opt.lr)
criterion = nn.CrossEntropyLoss()
if opt.dataset in TEXT_DATASETS:
folder_pwd = os.path.join(DATA, CHEN)
info = json.loads(open(os.path.join(folder_pwd, INFO), "rt").read())
training_text.train_ll(model, {
'train': utrain_iter,
'valid': uvalid_iter
}, info, opt, optimizer)
def main():
parser = argparse.ArgumentParser(description='Pytorch parser')
parser.add_argument('--train_cfg',
type=str,
default='./configs/efficientdet-d0.yaml',
help='train config path')
parser.add_argument('-d',
'--device',
default=None,
type=str,
help='indices of GPUs to enable (default: all)')
parser.add_argument('-r',
'--resume',
default=None,
type=str,
help='path to latest checkpoint (default: None)')
CustomArgs = collections.namedtuple('CustomArgs', 'flags type target')
options = [
CustomArgs(['-lr', '--learning_rate'],
type=float,
target='OPTIMIZER,ARGS,lr'),
CustomArgs(
['-bs', '--batch_size'],
type=int,
target=
'TRAIN_DATALOADER,ARGS,batch_size;VALID_DATALOADER,ARGS,batch_size'
)
]
config = config_parser(parser, options)
init_seed(config['SEED'])
train_dataset = VOCDetection(root=VOC_ROOT,
transform=SSDAugmentation(
voc['min_dim'], MEANS))
train_dataloader = getattribute(config=config,
name_package='TRAIN_DATALOADER',
dataset=train_dataset,
collate_fn=detection_collate)
# valid_dataloader = getattribute(config = config, name_package = 'VALID_DATALOADER', dataset = valid_dataset)
model = getattribute(config=config, name_package='MODEL')
criterion = getattribute(config=config, name_package='CRITERION')
optimizer = getattribute(config=config,
name_package='OPTIMIZER',
params=model.parameters())
scheduler = getattribute(config=config,
name_package='SCHEDULER',
optimizer=optimizer)
device = config['DEVICE']
metric_ftns = []
num_epoch = config['NUM_EPOCH']
gradient_clipping = config['GRADIENT_CLIPPING']
gradient_accumulation_steps = config['GRADIENT_ACCUMULATION_STEPS']
early_stopping = config['EARLY_STOPPING']
validation_frequency = config['VALIDATION_FREQUENCY']
tensorboard = config['TENSORBOARD']
checkpoint_dir = Path(config['CHECKPOINT_DIR'], type(model).__name__)
checkpoint_dir.mkdir(exist_ok=True, parents=True)
resume_path = config['RESUME_PATH']
learning = Learning(model=model,
criterion=criterion,
optimizer=optimizer,
scheduler=scheduler,
metric_ftns=metric_ftns,
device=device,
num_epoch=num_epoch,
grad_clipping=gradient_clipping,
grad_accumulation_steps=gradient_accumulation_steps,
early_stopping=early_stopping,
validation_frequency=validation_frequency,
tensorboard=tensorboard,
checkpoint_dir=checkpoint_dir,
resume_path=resume_path)
learning.train(tqdm(train_dataloader))
