def main(args):
# 1. 加载配置文件
config = load_json_config(args.model_config_file)
# 2. 加载模型
bert_config = BertConfig.from_json_file(config.get("bert_config_path"))
model = FastBertModel(bert_config, config)
load_saved_model(model, args.save_model_path)
model = model.to(device)
print('Initialize model Done'.center(60, '*'))
# 3. 数据集的准备
infer_dataset = PrepareDataset(vocab_file=config.get("vocab_file"),
max_seq_len=config.get("max_seq_len"),
num_class=config.get("num_class"),
data_file=args.infer_data)
print("Load INFER Dataset Done, Total eval line: ",
infer_dataset.__len__())
# 4. 开始infer
infer_model(model,
infer_dataset,
num_workers=args.data_load_num_workers,
inference_speed=args.inference_speed,
dump_info_file=args.dump_info_file)
def init_model(self):
bert_config = BertConfig.from_json_file(
self.config.get("bert_config_path"))
self.model = FastBertModel(bert_config, self.config)
logging.info(self.model)
logging.info("Initialize Model Done".center(60, "="))
logging.info("Load saved model from: " + self.save_model_path)
load_saved_model(self.model, self.save_model_path)
logging.info("Load Saved Model Done".center(60, "="))
if self.use_cuda:
self.model = self.model.cuda(self.gpu_id)
self.model.eval()
def predict(self, criterion):
print("Predicting on test set...")
if self.use_cuda:
self.meta_net.cuda()
self.loss_criterion = criterion
# Load model
self.prev_meta_step_count, self.meta_net, self.meta_optimizer, self.state = utils.load_saved_model(
self.model_path, self.meta_net,
self.build_optimizers(self.meta_net))
print(
f"Model has been loaded step:{self.prev_meta_step_count}, path:{self.model_path}"
)
transform_list_test = []
# if Config.predict.use_augmentation:
# transform_list_test.extend([transforms.Resize(Config.data.image_size), ImageNetPolicy(Config.predict.num_sample_augmentation)])
transform_list_test.extend([
transforms.Resize(
(Config.data.image_size,
Config.data.image_size)), # transforms.ToTensor(),
# transforms.Normalize(mean=[0.485, 0.456, 0.406],
# std=[0.229, 0.224, 0.225])
])
transform_test = transforms.Compose(transform_list_test)
test_dataset_imgs = read_dataset_test(Config.data.miniimagenet_path,
transform_test)[0]
evaluation = self.evaluate(test_dataset_imgs)
print(f"Total score: {evaluation}")
return evaluation
def test(root, binary, filename=""):
model = load_saved_model(filename=filename)
dataset_container = SSTContainer(root=root, binary=binary)
test_X, test_Y = dataset_container.data("test")
pred_Y = model.predict(test_X)
pred_Y = np.argmax(pred_Y, axis=1)
accuracy_value = accuracy_score(test_Y, pred_Y)
precision_value = precision_score(test_Y, pred_Y, average="macro")
recall_value = recall_score(test_Y, pred_Y, average="macro")
f1_score_value = f1_score(
test_Y,
pred_Y,
average="macro",
)
cm = confusion_matrix(test_Y,
pred_Y,
labels=np.sort(np.unique(np.array(test_Y))))
logger.info(
f"accuracy: {accuracy_value}, precision: {precision_value}, recall: {recall_value}, f1-score: {f1_score_value}"
)
logger.info(f"confusion matrix: \n {cm}")
def main(args):
config = load_json_config(args.model_config_file)
logging.info(json.dumps(config, indent=2, sort_keys=True))
logging.info("Load HyperParameters Done")
#---------------------MODEL GRAPH INIT--------------------------#
bert_config = BertConfig.from_json_file(config.get("bert_config_path"))
model = FastBertModel(bert_config, config)
load_saved_model(model, args.save_model_path)
logging.info(model)
logging.info("Initialize Model Done".center(60, "="))
#-----------GPU SETTING, INFER Only Support Max 1 GPU-----------#
use_cuda = args.gpu_ids != '-1'
device = torch.device('cuda' if use_cuda else 'cpu')
model.to(device)
master_gpu_id = 0
# if len(args.gpu_ids) == 1 and use_cuda:
# master_gpu_id = int(args.gpu_ids)
# model = model.cuda(int(args.gpu_ids)) if use_cuda else model
# elif not use_cuda:
# master_gpu_id = None
# else:
# raise RuntimeError("GPU Mode not support, INFER Only Support Max 1 GPU: " + args.gpu_ids)
#-----------------------Dataset Init---------------------------#
infer_dataset = PrepareDataset(vocab_file=config.get("vocab_file"),
max_seq_len=config.get("max_seq_len"),
num_class=config.get("num_class"),
data_file=args.infer_data)
logging.info("Load INFER Dataset Done, Total eval line: %s",
infer_dataset.__len__())
#-----------------------Running Mode Start, Batch Size Only Support 1--------------------------------#
infer_model(master_gpu_id,
model,
infer_dataset,
use_cuda=use_cuda,
num_workers=args.data_load_num_workers,
inference_speed=args.inference_speed,
dump_info_file=args.dump_info_file)
def init_model():
model_dict = {
"sgd":
load_saved_model("sgd", os.path.join(ROOT_DIR, "saved_models/sgd.h5")),
"adam":
load_saved_model("adam", os.path.join(ROOT_DIR,
"saved_models/adam.h5")),
"adagrad":
load_saved_model("adagrad",
os.path.join(ROOT_DIR, "saved_models/adagrad.h5")),
"adabound":
load_saved_model("adabound",
os.path.join(ROOT_DIR, "saved_models/adabound.h5")),
"amsbound":
load_saved_model("amsbound",
os.path.join(ROOT_DIR, "saved_models/amsbound.h5")),
"adadelta":
load_saved_model("adadelta",
os.path.join(ROOT_DIR, "saved_models/adadelta.h5"))
}
print("Model loaded")
return model_dict
def embeddings_run():
ast_filepath = "processed/hoc18_ast_block_matrix.npy"
embed_input = embeddings.load_asts_from_file(ast_filepath, raejoon=True)
embed_output = embeddings.get_output_labels(embed_input)
embed_model = embeddings.create_model(embed_input)
embed_history = embeddings.fit_model(embed_model,
embed_input, embed_output,
epochs=2)
#print(embed_history.effective_accuracy["train"])
#print(embed_history.effective_accuracy["validate"])
embed_model_filename = "tmp/my_embeddings.h5"
utils.save_model(embed_model, embed_model_filename)
embed_model = utils.load_saved_model(embed_model_filename)
ast_dirpath = "anonymizeddata/data/hoc18/asts/"
embed_matrix = embeddings.get_embeddings(embed_model, embed_input,
ast_dirpath)
print("Embeddings matrix (including 1st row) size: ",
np.shape(embed_matrix))
embeddings.save_embeddings(embed_matrix, embed_dict_filename)
def main(args):
# 1. 加载预定义的一些配置文件
config = load_json_config(args.model_config_file)
bert_config = BertConfig.from_json_file(
config.get('bert_config_path')) # bert模型的配置文件
# 2. 预训练模型的加载
if args.run_mode == 'train':
# 第一步的训练训练的是teacher cls
if args.train_stage == 0:
model = FastBertModel.load_pretrained_bert_model(
bert_config,
config,
pretrained_model_path=config.get('bert_pretrained_model_path'))
save_model_path_for_train = args.save_model_path
# 第二步是去蒸馏student cls
elif args.train_stage == 1:
model = FastBertModel(bert_config, config)
load_saved_model(model, args.save_model_path)
save_model_path_for_train = args.save_model_path_distill
for name, p in model.named_parameters():
if 'branch_classifier' not in name:
p.requires_grad = False
print(
'Teacher Classifier Freezed, Student Classifier will Distilling'
)
else:
print('error, please choose 0 or 1')
elif args.run_mode == 'eval':
model = FastBertModel(bert_config, config)
load_saved_model(model, args.save_model_path)
else:
print('Operation mode not legal')
print("initialize model Done".center(60, '*'))
model.to(device)
# 3. 数据集的初始化
if args.train_data:
train_dataset = PrepareDataset(vocab_file=config.get('vocab_file'),
max_seq_len=config.get('max_seq_len'),
num_class=config.get('num_class'),
data_file=args.train_data)
print('load training dataset done. total training num: {}'.format(
train_dataset.__len__()))
if args.eval_data:
eval_dataset = PrepareDataset(vocab_file=config.get('vocab_file'),
max_seq_len=config.get('max_seq_len'),
num_class=config.get('num_class'),
data_file=args.eval_data)
print('load eval dataset done. total eval num: {}'.format(
eval_dataset.__len__()))
# 4.开始训练
if args.run_mode == 'train':
optimizer = init_bert_adam_optimizer(
model, train_dataset.__len__(), args.epochs, args.batch_size,
config.get('gradient_accumulation_steps'), config.get('init_lr'),
config.get('warmup_proportion'))
train_model(args.train_stage,
save_model_path_for_train,
model,
optimizer,
args.epochs,
train_dataset,
eval_dataset,
batch_size=args.batch_size,
gradient_accumulation_steps=config.get(
'gradient_accumulation_steps'),
num_workers=args.data_load_num_workers)
elif args.run_mode == 'eval':
eval_model(args.train_stage,
model,
eval_dataset,
batch_size=args.batch_size,
num_workers=args.data_load_num_workers)
else:
print('参数错误')
def main(args):
config = load_json_config(args.model_config_file)
logging.info(json.dumps(config, indent=2, sort_keys=True))
logging.info("Load HyperParameters Done")
#---------------------MODEL GRAPH INIT--------------------------#
bert_config = BertConfig.from_json_file(config.get("bert_config_path"))
if args.run_mode == 'train':
#初始训练
if args.train_stage == 0:
model = FastBertModel.load_pretrained_bert_model(
bert_config,
config,
pretrained_model_path=config.get("bert_pretrained_model_path"))
save_model_path_for_train = args.save_model_path
#蒸馏训练
elif args.train_stage == 1:
model = FastBertModel(bert_config, config)
load_saved_model(model, args.save_model_path)
save_model_path_for_train = args.save_model_path_distill
#Freeze Part Model
for name, p in model.named_parameters():
if "branch_classifier" not in name:
p.requires_grad = False
logging.info(
"Main Graph and Teacher Classifier Freezed, Student Classifier will Distilling"
)
else:
raise RuntimeError('Operation Train Stage(0 or 1) not Legal')
elif args.run_mode == 'eval':
model = FastBertModel(bert_config, config)
load_saved_model(model, args.save_model_path)
else:
raise RuntimeError('Operation Mode not Legal')
logging.info(model)
logging.info("Initialize Model Done".center(60, "="))
#---------------------GPU SETTING--------------------------#
# device = torch.device('cuda' if torch.cuda else 'cpu')
# model.to(device)
# master_gpu_id = 0
use_cuda = args.gpu_ids != '-1'
if len(args.gpu_ids) == 1 and use_cuda:
master_gpu_id = int(args.gpu_ids)
model = model.cuda(int(args.gpu_ids)) if use_cuda else model
elif use_cuda:
gpu_ids = [int(each) for each in args.gpu_ids.split(",")]
master_gpu_id = gpu_ids[0]
model = model.cuda(gpu_ids[0])
logging.info("Start multi-gpu dataparallel training/evaluating...")
model = torch.nn.DataParallel(model, device_ids=gpu_ids)
else:
master_gpu_id = None
#-----------------------Dataset Init --------------------------------#
if args.train_data:
train_dataset = PrepareDataset(vocab_file=config.get("vocab_file"),
max_seq_len=config.get("max_seq_len"),
num_class=config.get("num_class"),
data_file=args.train_data)
logging.info("Load Training Dataset Done, Total training line: %s",
train_dataset.__len__())
if args.eval_data:
eval_dataset = PrepareDataset(vocab_file=config.get("vocab_file"),
max_seq_len=config.get("max_seq_len"),
num_class=config.get("num_class"),
data_file=args.eval_data)
logging.info("Load Eval Dataset Done, Total eval line: %s",
eval_dataset.__len__())
#-----------------------Running Mode Start--------------------------------#
if args.run_mode == "train":
optimizer = init_bert_adam_optimizer(
model, train_dataset.__len__(), args.epochs, args.batch_size,
config.get("gradient_accumulation_steps"), config.get("init_lr"),
config.get("warmup_proportion"))
train_model(args.train_stage,
save_model_path_for_train,
master_gpu_id,
model,
optimizer,
args.epochs,
train_dataset,
eval_dataset,
batch_size=args.batch_size,
gradient_accumulation_steps=config.get(
"gradient_accumulation_steps"),
use_cuda=use_cuda,
num_workers=args.data_load_num_workers)
elif args.run_mode == "eval":
eval_model(args.train_stage,
master_gpu_id,
model,
eval_dataset,
batch_size=args.batch_size,
use_cuda=use_cuda,
num_workers=args.data_load_num_workers)
else:
raise RuntimeError("Mode not support: " + args.mode)
def main(args):
logging.info("Loading HyperParameters".center(60, "="))
config = load_json_config(args.config_file)
logging.info(json.dumps(config, indent=2, sort_keys=True))
logging.info("Load HyperParameters Done".center(60, "="))
logging.info("Loading Dataset".center(60, "="))
dataset = MultiLabelClassificationDataset(
vocab_file=config.get("vocab_file"),
label_file=config.get("label_file"),
label_weight_file=config.get("label_weight_file"),
max_seq_len=config.get("max_seq_len"),
training_path=config.get("training_path"),
testing_path=config.get("testing_path"))
logging.info("Total training line: " + str(dataset.training_len) +
", total testing line: " + str(dataset.testing_len))
label_size = len(dataset.label2idx)
logging.info('label size: %d' % label_size)
logging.info("Load Dataset Done".center(60, "="))
label_weight = dataset.label_weight.to('cuda') if config.get(
"use_cuda") else dataset.label_weight
logging.info("Initializing SequenceClassification Model".center(60, "="))
if config.get("pretrained_model_path"):
model = BertForMultiLabelClassification.load_pretrained_bert_model(
bert_config_path=config.get("bert_config_path"),
pretrained_model_path=config.get("pretrained_model_path"),
num_labels=len(dataset.label2idx),
label_weight=label_weight)
else:
model = BertForMultiLabelClassification(BertConfig.from_json_file(
config.get("bert_config_path")),
len(dataset.label2idx),
label_weight=label_weight)
if config.get("num_tuning_layers") is not None:
model.bert.encoder.layer = torch.nn.ModuleList(
model.bert.encoder.layer[:config.get("num_tuning_layers")])
logging.info(model)
logging.info("Initialize SequenceClassification Model Done".center(
60, "="))
if args.saved_model:
logging.info("Loading Saved Model".center(60, "="))
logging.info("Load saved model from: " + args.saved_model)
load_saved_model(model, args.saved_model)
logging.info("Load Saved Model Done".center(60, "="))
master_gpu_id = None
if len(args.gpu_ids) == 1:
master_gpu_id = int(args.gpu_ids)
model = model.cuda(int(
args.gpu_ids)) if config.get("use_cuda") else model
else:
gpu_ids = [int(each) for each in args.gpu_ids.split(",")]
master_gpu_id = gpu_ids[0]
model = model.cuda(gpu_ids[0])
logging.info("Start multi-gpu dataparallel training/evaluating...")
model = torch.nn.DataParallel(model, device_ids=gpu_ids)
if args.mode == "eval":
if args.input_file:
dataset = MultiLabelClassificationDataset(
vocab_file=config.get("vocab_file"),
label_file=config.get("label_file"),
max_seq_len=config.get("max_seq_len"),
label_weight_file=config.get("label_weight_file"),
testing_path=args.input_file)
eval_model(master_gpu_id, model, dataset, label_size,
config.get("eval_batch_size"), config.get("use_cuda"),
config.get("num_workers"))
elif args.mode == "predict":
if args.input_file:
dataset = MultiLabelClassificationDataset(
vocab_file=config.get("vocab_file"),
label_file=config.get("label_file"),
max_seq_len=config.get("max_seq_len"),
label_weight_file=config.get("label_weight_file"),
testing_path=args.input_file)
model_predict(master_gpu_id, model, dataset, config,
config.get("eval_batch_size"), config.get("use_cuda"),
config.get("num_workers"), args.output_file)
elif args.mode == "train":
optimizer = init_bert_adam_optimizer(
model, dataset.training_len, config.get("epochs"),
config.get("batch_size"),
config.get("gradient_accumulation_steps"), config.get("init_lr"),
config.get("warmup_proportion"))
train_model(config.get("experiment_name"),
master_gpu_id,
model,
optimizer,
config.get("epochs"),
dataset,
label_size,
batch_size=config.get("batch_size"),
eval_batch_size=config.get("eval_batch_size"),
gradient_accumulation_steps=config.get(
"gradient_accumulation_steps"),
use_cuda=config.get("use_cuda"),
num_workers=config.get("num_workers"))
else:
raise RuntimeError("Mode not support: " + args.mode)
@app.route('/', methods=['GET'])
def Home():
return render_template('real_estate.html', data=[{'name':'JA'}, {'name':'JP'}])
@app.route('/predict_price', methods=['GET', 'POST'])
def predict_price():
if request.method == 'POST':
area = float(request.form.get('area'))
rooms = int(request.form.get('rooms'))
suites = int(request.form.get('suites'))
bathrooms = int(request.form.get('bathrooms'))
parkings = int(request.form.get('parkings'))
neighborhood = request.form.get('neighborhood')
response = utils.get_estimated_price(
neighborhood, area, rooms, suites, bathrooms, parkings)
if response < 0:
return render_template('real_estate.html', prediction_texts="The price is below zero", prediction_text_dollar="The price is below zero",data=[{'name':'JA'}, {'name':'JP'}])
else:
return render_template('real_estate.html', prediction_text="{:.2f}R$".format(response), prediction_text_dollar="{:.2f}$".format(response/5.12),data=[{'name':'JA'}, {'name':'JP'}])
else:
return render_template('real_estate.html', data=[{'name':'JA'}, {'name':'JP'}])
if __name__ == "__main__":
print('Starting python Flask Server for Real estate Prediction')
utils.load_saved_model()
app.run(debug=True)
def main(args):
# 1. 加载配置文件
config = load_json_config(args.model_config_file)
# 2. 加载模型
bert_config = BertConfig.from_json_file(config.get("bert_config_path"))
model = FastBertModel(bert_config, config)
load_saved_model(model, args.save_model_path)
model = model.to(device)
print('Initialize model Done'.center(60, '*'))
max_seq_len = 60
labels = []
texts = []
inference_speed = 0.5
with open('./data/tcl/test.tsv', 'r') as f:
lines = f.readlines()
for line in lines:
line = line.strip()
label, text = line.split(' ')
labels.append(int(label))
texts.append(text)
sum_num = len(labels)
correct_num = 0
result = []
for l, t in zip(labels, texts):
start_time = time.time()
# 3. 数据集的准备
vocab_file = config.get("vocab_file")
do_lower_case = True
tokenizer = tokenization.FullTokenizer(vocab_file=vocab_file,
do_lower_case=do_lower_case)
tokens = tokenizer.tokenize(t)
tokens = tokens[:(max_seq_len - 1)]
tokens = ["[CLS]"] + tokens
tokens = tokenizer.convert_tokens_to_ids(tokens)
# return {"text": t, "tokens": tokens, "label": label}
# 4. 开始infer
segment_ids = [0] * len(tokens)
attn_masks = [1] * len(tokens)
tokens = torch.LongTensor([tokens])
segment_ids = torch.LongTensor([segment_ids])
attn_masks = torch.LongTensor([attn_masks])
l = torch.LongTensor([l])
# print(tokens.size())
# print(segment_ids.size())
# print(attn_masks.size())
# print(l.size())
with torch.no_grad():
probs, layer_idxes, uncertain_infos = model(
tokens,
token_type_ids=segment_ids,
attention_mask=attn_masks,
inference=True,
inference_speed=inference_speed)
_, top_index = probs.topk(1)
spend_time = time.time() - start_time
if top_index.view(-1) == l:
correct_num += 1
print(l[0].numpy())
print(top_index.view(-1)[0].numpy())
exit()
s = str(l[0]) + ' ' + str(
top_index.view(-1)[0]) + ' ' + str(spend_time) + ' ' + t
result.append(s)
print('正确率:{}'.format(correct_num / sum_num))
with open('result.txt', 'w') as f:
f.write('\n'.join(result))
def train_fn(self, criterion, optimizer, resume=True):
self.loss_criterion = criterion
self.fast_optimizer = optimizer
self.meta_optimizer = torch.optim.SGD(self.meta_net.parameters(),
lr=Config.train.meta_lr)
# self.exp_lr_scheduler = lr_scheduler.StepLR(self.classifier_optimizer, step_size=10, gamma=0.1)
if resume:
self.prev_meta_step_count, self.meta_net, self.meta_optimizer, self.state = utils.load_saved_model(
self.model_path, self.meta_net, self.meta_optimizer)
print(
f"Model has been loaded step:{self.prev_meta_step_count}, path:{self.model_path}"
)
self.logger = Logger(os.path.join(self.c_path, 'log.txt'),
title=self.title)
self.logger.set_names(
['step', 'Learning Rate', 'Train Acc.', 'Valid Acc.'])
return self._train
old_data_dictionary = json.loads(utils.get_HDF5(hf_file,
'data_dictionary'))
best_parameters = json.loads(utils.get_HDF5(hf_file, 'best_parameters'))
model_weights = list()
weight_ctr = 0
while True:
try:
d_key = "weight_" + str(weight_ctr)
weights = utils.get_HDF5(hf_file, d_key)
model_weights.append(weights)
weight_ctr += 1
except Exception as exception:
break
hf_file.close()
loaded_model = utils.load_saved_model(model_config, model_weights)
# Extract and process workflows
connections = extract_workflow_connections.ExtractWorkflowConnections()
workflow_paths, compatible_next_tools = connections.read_tabular_file(
sys.argv[1])
# Process the paths from workflows
print("Dividing data...")
data = prepare_data.PrepareData(maximum_path_length, test_share, retrain)
train_data, train_labels, test_data, test_labels, data_dictionary, reverse_dictionary, inverse_class_weights = data.get_data_labels_matrices(
workflow_paths, old_data_dictionary)
# retrain the model on new data
retrain_predict_tool = RetrainPredictTool()
results = retrain_predict_tool.retrain_model(
