def __init__(self,
model,
inputs_train,
targets_train,
inputs_val,
targets_val,
to_rgb=False,
root_dir=os.path.dirname(__name__)):
#inputs and target are DF
self.model = model
#model to evaluate
self.model_eval = copy.deepcopy(self.model)
self.model_eval.to('cpu')
self.labels = None
self.labels_num = None
self.sampler = self._create_sampler(targets_train.values.astype(int))
self.m_exporter = ModelExporter('temp', root_dir=root_dir)
self.model_name = copy.deepcopy(self.model.name)
# Generators
self.training_set = Fer2013Dataset(inputs=inputs_train,
targets=targets_train,
to_rgb=to_rgb,
device='cpu')
self.validation_set = Fer2013Dataset(inputs=inputs_val,
targets=targets_val,
to_rgb=to_rgb,
device='cpu')
#https://stanford.edu/~shervine/blog/pytorch-how-to-generate-data-parallel
self.use_cuda = torch.cuda.is_available()
self.device = torch.device("cuda:0" if self.use_cuda else "cpu")
torch.backends.cudnn.benchmark = True #if inputs sizes remain the same, should go faster
if self.use_cuda:
print('empty cuda cache')
torch.cuda.empty_cache()
self.model.to(self.device)
print(f'use cuda: {self.use_cuda}')
dtype = torch.float
model_name = f'cnn_triple_layer_D_bs_{learning_rate}_{batch_size}_{n_epochs}_{n_classes}'
model = CnnTripleLayer(model_name, d_out=n_classes)
model.train()
train_classifier = TrainClassifier2(model,
X_train_df,
y_train_df,
X_val_df,
y_val_df,
root_dir=current_working_dir)
t = time.time()
trained_model, optimizer, criterion, \
train_loss_hist, train_acc_hist, train_f1_hist, train_b_hist,\
val_loss_hist, val_acc_hist, val_f1_hist, val_b_hist = train_classifier.run_train(n_epochs=n_epochs,
lr=learning_rate,
batch_size=batch_size)
print(f'trained in {time.time() - t} sec')
if args.s_model:
m_exporter = ModelExporter('fer2013_datasetD',
root_dir=current_working_dir)
m_exporter.save_nn_model(trained_model, optimizer,
trained_model.get_args())
m_exporter.save_results(f'{model_name}', train_loss_hist,
train_acc_hist, train_f1_hist, train_b_hist,
val_loss_hist, val_acc_hist, val_f1_hist,
val_b_hist)
dtype = torch.float
device = torch.device("cpu")
model_name = f'cnn_double_layer_D_bs_{learning_rate}_{batch_size}_{n_epochs}_{n_classes}'
model = CnnDoubleLayer(model_name, d_out=n_classes)
model.train()
train_classifier = TrainClassifier2(model, X_df, y_df)
t = time.time()
trained_model, optimizer, criterion, loss_hist, loss_val_hist, f1_val_hist = train_classifier.run_train(
n_epochs=n_epochs, lr=learning_rate, batch_size=batch_size)
print(f'trained in {time.time() - t} sec')
pre.save_results(loss_hist, loss_val_hist, f1_val_hist, f'{model_name}')
if args.s_model:
m_exporter = ModelExporter('fer2013_DatasetD')
m_exporter.save_nn_model(trained_model, optimizer,
trained_model.get_args())
if args.s_patterns:
detected_patterns1 = trained_model.get_detected_patterns1()
for idx in range(10):
plt.figure(1, figsize=(20, 10))
for p in range(trained_model.n_patterns1):
pattern = detected_patterns1[idx][p].reshape(
detected_patterns1.shape[2], detected_patterns1.shape[3])
patern_np = pattern.detach().numpy().reshape(24, 24)
plt.subplot(2, 5, 1 + p)
plt.imshow(patern_np, cmap='gray', interpolation='none')
pre.save_plt_as_image(plt, f'patterns_1_{idx}')
class TrainClassifier4():
def __init__(self,
model,
inputs_train,
targets_train,
inputs_val,
targets_val,
root_dir=os.path.dirname(__name__)):
#inputs and target are DF
self.model = model
#model to evaluate
self.model_eval = copy.deepcopy(self.model)
self.model_eval.to('cpu')
self.labels = None
self.labels_num = None
self.sampler = self._create_sampler(targets_train.values.astype(int))
self.m_exporter = ModelExporter('temp', root_dir=root_dir)
self.model_name = copy.deepcopy(self.model.name)
# Generators
self.training_set = Fer2013Dataset(inputs=inputs_train.values,
targets=targets_train,
device='cpu')
self.validation_set = Fer2013Dataset(inputs=inputs_val.values,
targets=targets_val,
device='cpu')
#https://stanford.edu/~shervine/blog/pytorch-how-to-generate-data-parallel
self.use_cuda = torch.cuda.is_available()
self.device = torch.device("cuda:0" if self.use_cuda else "cpu")
torch.backends.cudnn.benchmark = True #if inputs sizes remain the same, should go faster
self.model.to(self.device)
print(f'use cuda: {self.use_cuda}')
def run_train(self, n_epochs, lr=0.001, batch_size=256):
print(f'training model: {self.model.name}')
training_generator = DataLoader(self.training_set,
sampler=self.sampler,
batch_size=batch_size,
num_workers=0)
self.model.train() #set model to training mode
# Loss and optimizer
criterion = torch.nn.CrossEntropyLoss()
optimizer = torch.optim.Adam(self.model.parameters(), lr=lr)
# Train
train_loss_hist = []
val_loss_hist = []
train_acc_hist = []
val_acc_hist = []
train_f1_hist = []
val_f1_hist = []
train_b_hist = []
val_b_hist = []
model_versions = {}
f = 5
for t in range(n_epochs):
for i, (batch_x, batch_y) in enumerate(training_generator):
# move to gpu if possible
batch_x, batch_y = batch_x.to(self.device), batch_y.to(
self.device)
# Berechne die Vorhersage (foward step)
outputs = self.model(batch_x)
# Berechne den Fehler (Ausgabe des Fehlers alle 100 Iterationen)
loss = criterion(outputs, batch_y)
# Berechne die Gradienten und Aktualisiere die Gewichte (backward step)
optimizer.zero_grad()
loss.backward()
optimizer.step()
del batch_x, batch_y, outputs
if self.use_cuda:
torch.cuda.empty_cache()
if i % 10 == 0:
print('.', end='', flush=True)
if t % f == 0:
model_params = copy.deepcopy(self.model.state_dict())
model_versions[t] = model_params
train_loss, train_acc, train_f1, val_loss,\
val_acc, val_f1, train_b, val_b = self._evaluate(model_params, criterion)
self.model_eval.name = f'{self.model_name}_epoch{t}'
self.m_exporter.save_nn_model(self.model_eval,
optimizer,
self.model.get_args(),
debug=False)
train_loss_hist.append(train_loss)
train_acc_hist.append(train_acc)
train_f1_hist.append(train_f1)
train_b_hist.append(train_b)
val_loss_hist.append(val_loss)
val_acc_hist.append(val_acc)
val_f1_hist.append(val_f1)
val_b_hist.append(val_b)
print(
'\n{} loss t: {:0.3f} v: {:0.3f} | acc t: {:0.3f} v: {:0.3f} |'
' f1 t: {:0.3f} v: {:0.3f} | b t: {:0.3f} v: {:0.3f}'.
format(t, train_loss, val_loss, train_acc, val_acc,
train_f1, val_f1, train_b, val_b))
print(f'\n ####training finished####')
best_iteration_loss = f * val_loss_hist.index(min(val_loss_hist))
print(f'optimal iteration val_loss: {best_iteration_loss}')
best_iteration_acc = f * val_acc_hist.index(max(val_acc_hist))
print(f'optimal iteration val_acc: {best_iteration_acc}')
best_iteration_f1 = f * val_f1_hist.index(max(val_f1_hist))
print(f'optimal iteration val_f1: {best_iteration_f1}')
best_iteration_b = f * val_b_hist.index(max(val_b_hist))
print(f'optimal iteration val_balanced_score: {best_iteration_b}')
# use the best trained model
self.model.load_state_dict(
state_dict=copy.deepcopy(model_versions[best_iteration_acc]))
self.model.eval() # set model to test model
self.model.name = f'{self.model_name}'
del model_versions
return self.model, optimizer, criterion,\
train_loss_hist, train_acc_hist, train_f1_hist, train_b_hist,\
val_loss_hist, val_acc_hist, val_f1_hist, val_b_hist
def _create_sampler(self, target_np):
self.labels = np.unique(target_np)
class_sample_count = np.array(
[len(np.where(target_np == t)[0]) for t in self.labels])
weight = 1. / class_sample_count
samples_weight = torch.from_numpy(
np.array([weight[t] for t in target_np])).double()
return WeightedRandomSampler(samples_weight,
len(samples_weight),
replacement=True)
def _evaluate(self, model_param, criterion):
# evaluate in CPU
# can't move all the training dataset to GPU, in my case and resources it is too much
with torch.no_grad(): # operations inside don't track history
self.model_eval.load_state_dict(state_dict=model_param)
self.model_eval.eval()
#train_prob = self.model_eval(self.training_set.x_data)
#train_pred = train_prob.argmax(1)
#train_loss = criterion(train_prob, self.training_set.y_data)
#train_acc = (train_pred == self.training_set.y_data.long()).float().mean()
#train_f1 = metrics.f1_score(self.training_set.y_data.long().numpy(), train_pred.numpy(), average='macro')
#train_m = Metrics(self.training_set.y_data, train_pred, self.labels)
#train_b = train_m.balanced_score()
gc.collect()
val_prob = self.model_eval(self.validation_set.x_data)
val_pred = val_prob.argmax(1)
val_loss = criterion(val_prob, self.validation_set.y_data)
val_acc = (
val_pred == self.validation_set.y_data.long()).float().mean()
val_f1 = metrics.f1_score(
self.validation_set.y_data.long().numpy(),
val_pred.numpy(),
average='macro')
val_m = Metrics(self.validation_set.y_data, val_pred, self.labels)
val_b = val_m.balanced_score()
gc.collect()
# evaluating train uses too much CPU, so I actually justr need the vslidate values for now
train_prob = val_prob
train_pred = val_prob.argmax(1)
train_loss = criterion(val_prob, self.validation_set.y_data)
train_acc = (
val_pred == self.validation_set.y_data.long()).float().mean()
train_f1 = metrics.f1_score(
self.validation_set.y_data.long().numpy(),
val_pred.numpy(),
average='macro')
train_m = Metrics(self.validation_set.y_data, val_pred,
self.labels)
train_b = val_m.balanced_score()
return train_loss.item(), train_acc, train_f1, val_loss.item(
), val_acc, val_f1, train_b, val_b
model_name = f'cnn_double_layer_C_bs_{learning_rate}_{batch_size}_{n_epochs}_{n_classes}'
model = CnnDoubleLayer(model_name, d_out=n_classes)
model.train()
train_classifier = TrainClassifier2(model, X_df, y_df)
t = time.time()
trained_model, optimizer, criterion, \
train_loss_hist, train_acc_hist, train_f1_hist, train_b_hist,\
val_loss_hist, val_acc_hist, val_f1_hist, val_b_hist = train_classifier.run_train(n_epochs=n_epochs,
lr=learning_rate,
batch_size=batch_size)
print(f'trained in {time.time() - t} sec')
if args.s_model:
m_exporter = ModelExporter('fer2013_DatasetC')
m_exporter.save_nn_model(trained_model, optimizer,
trained_model.get_args())
m_exporter.save_results(f'{model_name}', train_loss_hist,
train_acc_hist, train_f1_hist, train_b_hist,
val_loss_hist, val_acc_hist, val_f1_hist,
val_b_hist)
if args.s_patterns:
detected_patterns1 = trained_model.get_detected_patterns1()
for idx in range(10):
plt.figure(1, figsize=(20, 10))
for p in range(trained_model.n_patterns1):
pattern = detected_patterns1[idx][p].reshape(
detected_patterns1.shape[2], detected_patterns1.shape[3])
patern_np = pattern.detach().numpy().reshape(24, 24)
def run_train(self, n_epochs, lr=0.001, batch_size=256):
self.lr = lr
if(self.data_is_prepared == False):
self.prepare_data()
# Loss and optimizer
criterion = torch.nn.CrossEntropyLoss()
optimizer = torch.optim.Adam(self.model.parameters(), lr=lr)
# Train
loss_hist = []
loss_val_hist = []
acc_val_hist = []
f1_val_hist = []
model_versions = {}
m_exporter = ModelExporter('temp')
model_name = copy.deepcopy(self.model.name)
for t in range(n_epochs):
for batch in range(0, int(self.N / batch_size)):
# Berechne den Batch
batch_x, batch_y = self.model.get_batch(self.x, self.y, batch, batch_size)
# Berechne die Vorhersage (foward step)
outputs = self.model(batch_x)
# Berechne den Fehler (Ausgabe des Fehlers alle 100 Iterationen)
loss = criterion(outputs, batch_y)
# Berechne die Gradienten und Aktualisiere die Gewichte (backward step)
optimizer.zero_grad()
loss.backward()
optimizer.step()
# Berechne den Fehler (Ausgabe des Fehlers alle 50 Iterationen)
idx = 10
if t % idx == 0:
#current_lr = self._get_lr(optimizer)
#self._set_lr(optimizer, self._update_lr(optimizer, t))
#print(f'learning_rate: {current_lr}')
outputs = self.model(self.x)
loss = criterion(outputs, self.y)
loss_hist.append(loss.item())
outputs_val = self.model(self.x_val)
loss_val = criterion(outputs_val, self.y_val)
loss_val_hist.append(loss_val.item())
model_versions[t] = copy.deepcopy(self.model.state_dict())
accuracy_train = (outputs.argmax(1) == self.y.long()).float().mean()
accuracy_val= (outputs_val.argmax(1) == self.y_val.long()).float().mean()
acc_val_hist.append(accuracy_val)
f1_score = metrics.f1_score(self.y_val.long().numpy(), outputs_val.argmax(1).numpy(), average='macro')
f1_val_hist.append(f1_score)
print(t, ' train_loss: ',loss.item(), 'val_loss: ', loss_val.item(), ' - train_acc: ',
accuracy_train, ', val_acc: ', accuracy_val, ', val_f1: ', f1_score)
self.model.name = f'{model_name}_epoch{t}'
m_exporter.save_nn_model(self.model, optimizer, self.model.get_args(), debug=False)
best_iteration = idx*loss_val_hist.index(min(loss_val_hist))
print(f'optimal iteration val_loss: {best_iteration}')
best_iteration_f1 = idx * f1_val_hist.index(max(f1_val_hist))
print(f'optimal iteration val_f1: {best_iteration_f1}')
best_iteration_acc = idx * acc_val_hist.index(max(acc_val_hist))
print(f'optimal iteration val_acc: {best_iteration_acc}')
#use the best trained model
self.model.load_state_dict(state_dict=model_versions[best_iteration])
self.model.eval()
self.model.name = f'{model_name}'
y_pred = self.model(self.x).argmax(1)
accuracy_soft = (y_pred == self.y.long()).float().mean()
print(f'training accuracy: {accuracy_soft}')
return self.model, optimizer, criterion, loss_hist, loss_val_hist, f1_val_hist
X_train_df,
y_train_df,
X_val_df,
y_val_df,
root_dir=script_root_dir)
t = time.time()
trained_model, optimizer, criterion, \
train_loss_hist, train_acc_hist, train_f1_hist, train_b_hist,\
val_loss_hist, val_acc_hist, val_f1_hist, val_b_hist = train_classifier.run_train(n_epochs=n_epochs,
lr=learning_rate,
batch_size=batch_size)
print(f'trained in {time.time() - t} sec')
if args.s_model:
m_exporter = ModelExporter('fer2013_reduced', root_dir=script_root_dir)
m_exporter.save_nn_model(trained_model, optimizer,
trained_model.get_args())
m_exporter.save_results(f'{model_name}', train_loss_hist,
train_acc_hist, train_f1_hist, train_b_hist,
val_loss_hist, val_acc_hist, val_f1_hist,
val_b_hist)
if args.s_patterns:
detected_patterns = trained_model.get_detected_patterns()
for idx in range(10):
plt.figure(1, figsize=(20, 10))
for p in range(trained_model.n_patterns):
pattern = detected_patterns[idx][p].reshape(
detected_patterns.shape[2], detected_patterns.shape[3])
patern_np = pattern.detach().numpy().reshape(24, 24)
X_train = model.reshape_data(
torch.tensor(X_train_df.values, device=device, dtype=dtype))
y_train = torch.tensor(y_train_df.values, device=device, dtype=torch.long)
X_pred = trained_model(X_test)
print(f'test accuracy last trained model {c(X_pred, X_test)}')
trained_model.load_state_dict(state_dict=best_model_param)
trained_model.eval()
X_pred = trained_model(X_test)
print(f'test accuracy best model {c(X_pred, X_test)}')
if args.s_model:
m_exporter = ModelExporter('fer2013_DatasetA')
m_exporter.save_nn_model(trained_model, opt, 0, n_features_encoded,
n_epochs, trained_model.get_args())
X_train_encoded = trained_model.encoder(X_train)
X_test_encoded = trained_model.encoder(X_test)
X_test_decoded = trained_model.decoder(X_test_encoded)
X_train_encoded_df = pd.DataFrame(X_train_encoded.detach().numpy())
X_test_encoded_df = pd.DataFrame(X_test_encoded.detach().numpy())
cols = list(range(1, n_features_encoded + 1))
X_train_encoded_df.columns = cols
X_test_encoded_df.columns = cols
