def run(self):
try:
self.log('Initializing planner!')
scan_config = json.load(open('scan.json'))
rconfig = self.rconfig
obj = rconfig['uscope']['objective'][rconfig['obj']]
im_w_pix = int(rconfig['uscope']['imager']['width'])
im_h_pix = int(rconfig['uscope']['imager']['height'])
x_um = float(obj['x_view'])
self.planner = Planner(scan_config=scan_config, hal=rconfig['cnc_hal'], imager=rconfig['imager'],
img_sz=(im_w_pix, im_h_pix), unit_per_pix=(x_um / im_w_pix),
out_dir=rconfig['out_dir'],
progress_cb=rconfig['progress_cb'],
dry=rconfig['dry'],
#img_scalar=float(rconfig['uscope']['imager']['scalar']),
log=self.log, verbosity=2)
self.log('Running planner')
b = Benchmark()
self.planner.run()
b.stop()
self.log('Planner done! Took : %s' % str(b))
except Exception as e:
self.log('WARNING: planner thread crashed: %s' % str(e))
traceback.print_exc()
#raise
finally:
self.plannerDone.emit()
def run(self):
try:
self.log('Initializing planner!')
scan_config = json.load(open('scan.json'))
rconfig = self.rconfig
obj = rconfig['uscope']['objective'][rconfig['obj']]
im_w_pix = int(rconfig['uscope']['imager']['width'])
im_h_pix = int(rconfig['uscope']['imager']['height'])
x_um = float(obj['x_view'])
self.planner = Planner(scan_config=scan_config, hal=rconfig['cnc_hal'], imager=rconfig['imager'],
img_sz=(im_w_pix, im_h_pix), unit_per_pix=(x_um / im_w_pix),
out_dir=rconfig['out_dir'],
progress_cb=rconfig['progress_cb'],
dry=rconfig['dry'],
#img_scalar=float(rconfig['uscope']['imager']['scalar']),
log=self.log, verbosity=2)
self.log('Running planner')
b = Benchmark()
self.planner.run()
b.stop()
self.log('Planner done! Took : %s' % str(b))
except Exception as e:
self.log('WARNING: planner thread crashed: %s' % str(e))
traceback.print_exc()
#raise
finally:
self.plannerDone.emit()
class PlannerThread(QThread):
plannerDone = pyqtSignal()
def __init__(self,parent, rconfig):
QThread.__init__(self, parent)
self.rconfig = rconfig
self.planner = None
def log(self, msg):
#print 'emitting log %s' % msg
#self.log_buff += str(msg) + '\n'
self.emit(SIGNAL('log'), msg)
def setRunning(self, running):
planner = self.planner
if planner:
planner.setRunning(running)
def run(self):
try:
self.log('Initializing planner!')
scan_config = json.load(open('scan.json'))
rconfig = self.rconfig
obj = rconfig['uscope']['objective'][rconfig['obj']]
im_w_pix = int(rconfig['uscope']['imager']['width'])
im_h_pix = int(rconfig['uscope']['imager']['height'])
x_um = float(obj['x_view'])
self.planner = Planner(scan_config=scan_config, hal=rconfig['cnc_hal'], imager=rconfig['imager'],
img_sz=(im_w_pix, im_h_pix), unit_per_pix=(x_um / im_w_pix),
out_dir=rconfig['out_dir'],
progress_cb=rconfig['progress_cb'],
dry=rconfig['dry'],
#img_scalar=float(rconfig['uscope']['imager']['scalar']),
log=self.log, verbosity=2)
self.log('Running planner')
b = Benchmark()
self.planner.run()
b.stop()
self.log('Planner done! Took : %s' % str(b))
except Exception as e:
self.log('WARNING: planner thread crashed: %s' % str(e))
traceback.print_exc()
#raise
finally:
self.plannerDone.emit()
class PlannerThread(QThread):
plannerDone = pyqtSignal()
def __init__(self,parent, rconfig):
QThread.__init__(self, parent)
self.rconfig = rconfig
self.planner = None
def log(self, msg):
#print 'emitting log %s' % msg
#self.log_buff += str(msg) + '\n'
self.emit(SIGNAL('log'), msg)
def setRunning(self, running):
planner = self.planner
if planner:
planner.setRunning(running)
def run(self):
try:
self.log('Initializing planner!')
scan_config = json.load(open('scan.json'))
rconfig = self.rconfig
obj = rconfig['uscope']['objective'][rconfig['obj']]
im_w_pix = int(rconfig['uscope']['imager']['width'])
im_h_pix = int(rconfig['uscope']['imager']['height'])
x_um = float(obj['x_view'])
self.planner = Planner(scan_config=scan_config, hal=rconfig['cnc_hal'], imager=rconfig['imager'],
img_sz=(im_w_pix, im_h_pix), unit_per_pix=(x_um / im_w_pix),
out_dir=rconfig['out_dir'],
progress_cb=rconfig['progress_cb'],
dry=rconfig['dry'],
#img_scalar=float(rconfig['uscope']['imager']['scalar']),
log=self.log, verbosity=2)
self.log('Running planner')
b = Benchmark()
self.planner.run()
b.stop()
self.log('Planner done! Took : %s' % str(b))
except Exception as e:
self.log('WARNING: planner thread crashed: %s' % str(e))
traceback.print_exc()
#raise
finally:
self.plannerDone.emit()