def base(request, context):
# Keep existing service name previously set by any of the webtools
serviceName = getVarFromRequest(request, SERVICE_NAME)
if serviceName is None and SERVICE_NAME in context:
serviceName = context[SERVICE_NAME]
context_base = {
# ICON
'favicon': getResourceIcon('favicon'),
'logo_scipion': getResourceIcon('logo_scipion'),
'logo_scipion_transparent':
getResourceIcon('logo_scipion_transparent'),
# CSS
'general_css': getResourceCss('general'),
'messi_css': getResourceCss('messi'),
'font_awesome': getResourceCss('font_awesome'),
# JS
'jquery': getResourceJs('jquery'),
'messi_js': getResourceJs('messi'),
# JS
'utils': getResourceJs('utils'),
"projectName": getVarFromRequest(request, PROJECT_NAME),
SERVICE_NAME: serviceName
}
context = VARS_base(request, context)
context.update(context_base)
return context
def create_project(request):
manager = Manager()
if request.is_ajax():
projectName = getVarFromRequest(request, PROJECT_NAME)
workflow = getVarFromRequest(request, WORKFLOW)
manager.createProject(projectName, chdir=False, workflow=workflow)
return HttpResponse(content_type='application/javascript')
def project_content(request):
projectName = getVarFromRequest(request, PROJECT_NAME)
mode = getVarFromRequest(request, MODE)
project = Manager().loadProject(projectName, chdir=False)
context = contentContext(request, project)
context.update({'mode': mode, 'formUrl': 'form'})
if mode == MODE_WORKFLOW:
context.update({'nowest': True})
return render_to_response('project_content/project_content.html', context)
def contentContext(request, project, serviceName=None):
from pyworkflow.gui.tree import ProjectRunsTreeProvider
projectName = project.getShortName()
if serviceName is None:
serviceName = getVarFromRequest(request, SERVICE_NAME)
project_settings = project.getSettings()
request.session[CTX_PROJECT_PATH] = project.getPath()
request.session[PROJECT_NAME] = projectName
provider = ProjectRunsTreeProvider(project)
runs = formatProvider(provider, "runs")
request.session['runs'] = runs
# Get the selected runs stored in BD
selectedRuns = project_settings.runSelection
# Get the run mode view (0:list / 1:graph / 2:small graph) stored in BD
runsView = project_settings.runsView.get()
# load the protocol tree current active
htmlTree = loadProtTree(project, serviceName)
# get the choices to load protocol trees
choices = project.getProtocolViews()
# get the choice current
choiceSelected = choices.index(project.getCurrentProtocolView().text.get())
context = {
CTX_PROJECT_NAME: projectName,
'view': 'protocols',
'editTool': getResourceIcon('edit_toolbar'),
'copyTool': getResourceIcon('copy_toolbar'),
'deleteTool': getResourceIcon('delete_toolbar'),
'browseTool': getResourceIcon('browse_toolbar'),
'stopTool': getResourceIcon('stop_toolbar'),
'analyzeTool': getResourceIcon('analyze_toolbar'),
'treeTool': getResourceIcon('tree_toolbar'),
'listTool': getResourceIcon('list_toolbar'),
'graph_utils': getResourceJs('graph_utils'),
'project_content_utils': getResourceJs('project_content_utils'),
'jquery_cookie': getResourceJs('jquery_cookie'),
'jquery_treeview': getResourceJs('jquery_treeview'),
'project_content_css': getResourceCss('project_content'),
'protTreeHtml': htmlTree,
'choices': choices,
'choiceSelected': choiceSelected,
'runs': runs,
'columns': provider.getColumns(),
'runsView': runsView,
'selectedRuns': selectedRuns,
SERVICE_NAME: serviceName
}
context = base_flex(request, context)
return context
def delete_project(request):
manager = Manager()
if request.is_ajax():
projectName = getVarFromRequest(request, PROJECT_NAME)
manager.deleteProject(projectName)
return HttpResponse(content_type='application/javascript')
def base_wiz(request, context):
context_base = {
'general_style': getResourceCss('general'),
'wizard_style': getResourceCss('wizard'),
'jquery_ui_style': getResourceCss('jquery_ui'),
'font_awesome': getResourceCss('font_awesome'),
'jquery': getResourceJs('jquery'),
'jquery_ui': getResourceJs('jquery_ui'),
'jquery_ui_touch': getResourceJs('jquery_ui_touch'),
'wizard_utils': getResourceJs('wizard_utils'),
'raphael': getResourceJs('raphael'),
'utils': getResourceJs('utils'),
CTX_PROJECT_NAME: getVarFromRequest(request, PROJECT_NAME),
SERVICE_NAME: getVarFromRequest(request, SERVICE_NAME),
'loading': getResourceIcon('loading'),
}
context = VARS_base(request, context)
context.update(context_base)
return context
def data_content(request):
projectName = getVarFromRequest(request, PROJECT_NAME)
manager = Manager()
request.session[CTX_PROJECT_PATH] = manager.getProjectPath(projectName)
# project = loadProject(request)
context = {CTX_PROJECT_NAME: projectName,
'editTool': getResourceIcon('edit_toolbar'),
'graph_utils': getResourceJs('graph_utils'),
'project_content_utils': getResourceJs('project_content_utils'),
'data_content_utils': getResourceJs('data_content_utils'),
'jquery_cookie': getResourceJs('jquery_cookie'),
'jquery_treeview': getResourceJs('jquery_treeview'),
'project_content_css': getResourceCss('project_content'),
'view': 'data'
}
context = base_flex(request, context)
return render_to_response('data_content/data_content.html', context)
def contextForm(request):
from views_base import base_form
from django.core.context_processors import csrf
from views_util import getResourceCss, getResourceIcon, getResourceJs, getResourceLogo
from pyworkflow.protocol.params import Group, Line
project, protocol = loadProtocolProject(request, requestType='GET')
action = request.GET.get('action', None)
paramProt = request.GET.get('paramProt', None)
protRunIdViewer = request.GET.get('protRunIdViewer', None)
# Patch : to fix the relion dynamic way to generate the viewer form
# For this is necessary to call setProtocol method
if protRunIdViewer is not None:
protocol_parent = project.getProtocol(int(protRunIdViewer))
protocol.setProtocol(protocol_parent)
hosts = project.getHostNames()
print "Host in the project: ", hosts
visualize = 0
viewerDict = None
if action == 'visualize':
visualize = 1
viewerDict = protocol._getVisualizeDict()
elif action == 'protSimple':
visualize = 2
elif action == 'copy':
protocol = project.copyProtocol(protocol)
package = protocol.getClassPackage()
logoPath = ''
path = getattr(package, '_logo', '')
if path != '':
logoPath = getResourceLogo(path)
wizards = findWizardsWeb(protocol)
protocol.htmlCitations = parseText(protocol.citations())
protocol.htmlDoc = parseText(protocol.getDoc())
for section in protocol._definition.iterSections():
for paramName, param in section.iterParams():
protVar = getattr(protocol, paramName, None)
if protVar is None:
# raise Exception("_fillSection: param '%s' not found in protocol" % paramName)
# GROUP PARAM
if isinstance(param, Group):
for paramGroupName, paramGroup in param.iterParams():
protVar = getattr(protocol, paramGroupName, None)
# LINE PARAM
if isinstance(paramGroup, Line):
for paramLineName, paramLine in paramGroup.iterParams():
protVar = getattr(protocol, paramLineName, None)
if protVar is None:
pass
else:
paramLine = PreprocessParamForm(request, paramLine, paramLineName, wizards, viewerDict, visualize, protVar)
# PATCH: This is applied to all the params in the line, maybe just need for the first one.
for name, _ in paramGroup.iterParams():
wizParamName = name
if wizParamName in wizards:
paramGroup.hasWizard = True
paramGroup.wizardClassName = wizards[wizParamName].__name__
if visualize == 1:
if paramGroupName in viewerDict:
paramGroup.hasViewer = True
if not paramGroup.help.empty():
paramGroup.htmlHelp = parseText(paramGroup.help.get())
paramGroup.htmlCond = paramGroup.condition.get()
paramGroup.htmlDepend = ','.join(paramGroup._dependants)
paramGroup.htmlCondParams = ','.join(paramGroup._conditionParams)
elif protVar is None:
pass
else:
paramGroup = PreprocessParamForm(request, paramGroup, paramGroupName, wizards, viewerDict, visualize, protVar)
param.htmlCond = param.condition.get()
param.htmlDepend = ','.join(param._dependants)
param.htmlCondParams = ','.join(param._conditionParams)
# LINE PARAM
if isinstance(param, Line):
for paramLineName, paramLine in param.iterParams():
protVar = getattr(protocol, paramLineName, None)
if protVar is None:
pass
else:
paramLine = PreprocessParamForm(request, paramLine, paramLineName, wizards, viewerDict, visualize, protVar)
# PATCH: This is applied to all the params in the line, maybe just need for the first one.
for name, _ in param.iterParams():
wizParamName = name
if wizParamName in wizards:
param.hasWizard = True
param.wizardClassName = wizards[wizParamName].__name__
if visualize == 1:
if paramName in viewerDict:
param.hasViewer = True
if not param.help.empty():
param.htmlHelp = parseText(param.help.get())
param.htmlCond = param.condition.get()
param.htmlDepend = ','.join(param._dependants)
param.htmlCondParams = ','.join(param._conditionParams)
else:
# OTHER PARAM
param = PreprocessParamForm(request, param, paramName, wizards, viewerDict, visualize, protVar)
context = {SERVICE_NAME: getVarFromRequest(request, SERVICE_NAME),
CTX_PROJECT_NAME: project.getShortName(),
'protocol': protocol,
'package_logo': logoPath,
'protRunIdViewer': protRunIdViewer,
'definition': protocol._definition,
'visualize': visualize,
'paramProt': paramProt,
'favicon': getResourceIcon('favicon'),
'comment': getResourceIcon('edit_toolbar'),
'jquery_ui_css': getResourceCss('jquery_ui'),
'wizard': getResourceIcon('wizard'),
'protocol_form_utils': getResourceJs('protocol_form_utils'),
'hosts': hosts,
'comment': parseText(protocol.getObjComment()),
'showHost': True,
'showParallel': True
}
# Update the context dictionary with the special params
for paramName in SPECIAL_PARAMS:
context[paramName] = protocol.getAttributeValue(paramName, '')
# Cross Site Request Forgery protection is need it
context.update(csrf(request))
context = base_form(request, context)
return context