def _plot_time_range(times, figname):
for i, t in enumerate(times):
mvi.clf()
cotr = Cotr(t)
mvi.plot_blue_marble(r=1.0, rotate=t, crd_system=crd_system,
nphi=256, ntheta=128, res=4, lines=True)
mvi.plot_earth_3d(radius=1.005, crd_system=crd_system,
night_only=True, opacity=0.5)
mag_north = cotr.transform('sm', crd_system, [0, 0, 1.0])
mvi.mlab.points3d(*mag_north, scale_factor=0.05, mode='sphere',
color=(0.992, 0.455, 0.0), resolution=32)
mvi.orientation_axes(line_width=4.0)
mvi.mlab.text(0.325, 0.95, viscid.format_datetime(t))
mvi.view(azimuth=0.0, elevation=90.0, distance=5.0,
focalpoint=[0, 0, 0])
mvi.savefig("{0}_eq_{1:06d}.png".format(figname, i))
mvi.view(azimuth=0.0, elevation=0.0, distance=5.0,
focalpoint=[0, 0, 0])
mvi.savefig("{0}_pole_{1:06d}.png".format(figname, i))
def run_test(fld, seeds, plot2d=True, plot3d=True, add_title="",
view_kwargs=None, show=False):
interpolated_fld = viscid.interp_trilin(fld, seeds)
seed_name = seeds.__class__.__name__
if add_title:
seed_name += " " + add_title
try:
if not plot2d:
raise ImportError
from viscid.plot import mpl
mpl.plt.clf()
# mpl.plt.plot(seeds.get_points()[2, :], fld)
mpl_plot_kwargs = dict()
if interpolated_fld.is_spherical():
mpl_plot_kwargs['hemisphere'] = 'north'
mpl.plot(interpolated_fld, **mpl_plot_kwargs)
mpl.plt.title(seed_name)
mpl.plt.savefig(next_plot_fname(__file__, series='2d'))
if show:
mpl.plt.show()
except ImportError:
pass
try:
if not plot3d:
raise ImportError
from viscid.plot import mvi
try:
fig = _global_ns['figure']
mvi.clf()
except KeyError:
fig = mvi.figure(size=[1200, 800], offscreen=not show)
_global_ns['figure'] = fig
try:
mesh = mvi.mesh_from_seeds(seeds, scalars=interpolated_fld)
mesh.actor.property.backface_culling = True
except RuntimeError:
pass
pts = seeds.get_points()
p = mvi.points3d(pts[0], pts[1], pts[2], interpolated_fld.flat_data,
scale_mode='none', scale_factor=0.02)
mvi.axes(p)
mvi.title(seed_name)
if view_kwargs:
mvi.view(**view_kwargs)
mvi.savefig(next_plot_fname(__file__, series='3d'))
if show:
mvi.show()
except ImportError:
pass
def run_test(_fld, _seeds, plot2d=True, plot3d=True, title="", show=False, **kwargs):
lines, topo = viscid.calc_streamlines(_fld, _seeds, **kwargs)
topo_color = viscid.topology2color(topo)
# downsample lines for plotting
lines = [line[:, ::8] for line in lines]
try:
if not plot2d:
raise ImportError
from viscid.plot import mpl
mpl.plt.clf()
mpl.plot2d_lines(lines, scalars=topo_color, symdir="y", marker="^")
if title:
mpl.plt.title(title)
mpl.plt.savefig(next_plot_fname(__file__, series="2d"))
if show:
mpl.plt.show()
except ImportError:
pass
try:
if not plot3d:
raise ImportError
from viscid.plot import mvi
try:
fig = _global_ns["figure"]
mvi.clf()
except KeyError:
fig = mvi.figure(size=[1200, 800], offscreen=not show)
_global_ns["figure"] = fig
fld_mag = np.log(viscid.magnitude(_fld))
try:
# note: mayavi.mlab.mesh can't take color tuples as scalars
# so one can't use topo_color on a mesh surface. This
# is a limitation of mayavi. To actually plot a specific
# set of colors on a mesh, one must use a texture
mesh = mvi.mesh_from_seeds(_seeds, scalars=topo, opacity=0.6)
mesh.actor.property.backface_culling = True
except RuntimeError:
pass
mvi.plot_lines(lines, scalars=fld_mag, tube_radius=0.01, cmap="viridis")
if title:
mvi.title(title)
mvi.savefig(next_plot_fname(__file__, series="3d"))
if show:
mvi.show()
except ImportError:
pass
def run_test(_fld, _seeds, plot2d=True, plot3d=True, show=False, **kwargs):
lines, topo = viscid.calc_streamlines(_fld, _seeds, **kwargs)
topo_fld = _seeds.wrap_field(topo)
topo_color = viscid.topology2color(topo)
# downsample lines for plotting
lines = [line[:, ::8] for line in lines]
try:
if not plot2d:
raise ImportError
from viscid.plot import mpl
mpl.plt.clf()
mpl.plot2d_lines(lines, scalars=topo_color, symdir="y", marker="^")
if show:
mpl.plt.show()
except ImportError:
pass
try:
if not plot3d:
raise ImportError
from viscid.plot import mvi
mvi.clf()
fld_mag = np.log(viscid.magnitude(_fld))
try:
# note: mayavi.mlab.mesh can't take color tuples as scalars
# so one can't use topo_color on a mesh surface. This
# is a limitation of mayavi. To actually plot a specific
# set of colors on a mesh, one must use a texture
vertices, scalars = _seeds.wrap_mesh(topo_fld.data)
mesh = mvi.mlab.mesh(vertices[0], vertices[1], vertices[2], scalars=scalars, opacity=0.5)
mesh.actor.property.backface_culling = True
except RuntimeError:
pass
mvi.plot_lines(lines, scalars=fld_mag, tube_radius=0.005)
if show:
mvi.show()
except ImportError:
pass
def main():
parser = argparse.ArgumentParser()
parser.add_argument("--notwo", dest='notwo', action="store_true")
parser.add_argument("--nothree", dest='nothree', action="store_true")
parser.add_argument("--show", "--plot", action="store_true")
args = viscid.vutil.common_argparse(parser, default_verb=0)
plot2d = not args.notwo
plot3d = not args.nothree
# plot2d = True
# plot3d = True
# args.show = True
img = np.load(sample_dir + "/logo.npy")
x = np.linspace(-1, 1, img.shape[0])
y = np.linspace(-1, 1, img.shape[1])
z = np.linspace(-1, 1, img.shape[2])
logo = viscid.arrays2field(img, [x, y, z])
if 1:
viscid.logger.info('Testing Line...')
seeds = viscid.Line([-1, -1, 0], [1, 1, 2], n=5)
run_test(logo, seeds, plot2d=plot2d, plot3d=plot3d, show=args.show)
if 1:
viscid.logger.info('Testing Plane...')
seeds = viscid.Plane([0.0, 0.0, 0.0], [1, 1, 1], [1, 0, 0], 2, 2,
nl=160, nm=170, NL_are_vectors=True)
run_test(logo, seeds, plot2d=plot2d, plot3d=plot3d, show=args.show)
if 1:
viscid.logger.info('Testing Volume...')
seeds = viscid.Volume([-0.8, -0.8, -0.8], [0.8, 0.8, 0.8],
n=[64, 64, 3])
# note: can't make a 2d plot of the volume w/o a slice
run_test(logo, seeds, plot2d=False, plot3d=plot3d, add_title="3d",
show=args.show)
if 1:
viscid.logger.info('Testing Volume (with ignorable dim)...')
seeds = viscid.Volume([-0.8, -0.8, 0.0], [0.8, 0.8, 0.0],
n=[64, 64, 1])
run_test(logo, seeds, plot2d=plot2d, plot3d=plot3d, add_title="2d",
show=args.show)
if 1:
viscid.logger.info('Testing Spherical Sphere (phi, theta)...')
seeds = viscid.Sphere([0, 0, 0], r=1.0, ntheta=160, nphi=170,
pole=[-1, -1, -1], theta_phi=False)
run_test(logo, seeds, plot2d=plot2d, plot3d=plot3d, add_title="PT",
show=args.show)
if 1:
viscid.logger.info('Testing Spherical Sphere (theta, phi)...')
seeds = viscid.Sphere([0, 0, 0], r=1.0, ntheta=160, nphi=170,
pole=[-1, -1, -1], theta_phi=True)
run_test(logo, seeds, plot2d=plot2d, plot3d=plot3d, add_title="TP",
show=args.show)
if 1:
viscid.logger.info('Testing Spherical Cap (phi, theta)...')
seeds = viscid.SphericalCap(p0=[0, 0, 0], r=1.0, ntheta=64, nphi=80,
pole=[-1, -1, -1], theta_phi=False)
run_test(logo, seeds, plot2d=plot2d, plot3d=plot3d, add_title="PT",
view_kwargs=dict(azimuth=180, elevation=180), show=args.show)
if 1:
viscid.logger.info('Testing Spherical Cap (theta, phi)...')
seeds = viscid.SphericalCap(p0=[0, 0, 0], r=1.0, ntheta=64, nphi=80,
pole=[-1, -1, -1], theta_phi=True)
run_test(logo, seeds, plot2d=plot2d, plot3d=plot3d, add_title="TP",
view_kwargs=dict(azimuth=180, elevation=180), show=args.show)
if 1:
viscid.logger.info('Testing Spherical Patch...')
seeds = viscid.SphericalPatch(p0=[0, 0, 0], p1=[0, -0, -1],
max_alpha=30.0, max_beta=59.9,
nalpha=65, nbeta=80, r=0.5, roll=45.0)
run_test(logo, seeds, plot2d=plot2d, plot3d=plot3d, show=args.show)
if 1:
viscid.logger.info('Testing RectilinearMeshPoints...')
f = viscid.load_file(sample_dir + '/sample_xdmf.3d.[-1].xdmf')
slc = 'x=-40f:12f, y=-10f:10f, z=-10f:10f'
b = f['b'][slc]
z = b.get_crd('z')
sheet_iz = np.argmin(b['x']**2, axis=2)
sheet_pts = b['z=0:1'].get_points()
sheet_pts[2, :] = z[sheet_iz].reshape(-1)
isphere_mask = np.sum(sheet_pts[:2, :]**2, axis=0) < 5**2
day_mask = sheet_pts[0:1, :] > -1.0
sheet_pts[2, :] = np.choose(isphere_mask, [sheet_pts[2, :], 0])
sheet_pts[2, :] = np.choose(day_mask, [sheet_pts[2, :], 0])
nx, ny, _ = b.sshape
sheet_seed = viscid.RectilinearMeshPoints(sheet_pts.reshape(3, nx, ny))
vx_sheet = viscid.interp_nearest(f['vx'], sheet_seed)
try:
if not plot2d:
raise ImportError
from viscid.plot import mpl
mpl.clf()
mpl.plot(vx_sheet, symmetric=True)
mpl.plt.savefig(next_plot_fname(__file__, series='2d'))
if args.show:
mpl.show()
except ImportError:
pass
try:
if not plot3d:
raise ImportError
from viscid.plot import mvi
mvi.clf()
mesh = mvi.mesh_from_seeds(sheet_seed, scalars=vx_sheet,
clim=(-400, 400))
mvi.plot_earth_3d(crd_system=b)
mvi.view(azimuth=+90.0 + 45.0, elevation=90.0 - 25.0,
distance=30.0, focalpoint=(-10.0, +1.0, +1.0))
mvi.title("RectilinearMeshPoints")
mvi.savefig(next_plot_fname(__file__, series='3d'))
if args.show:
mvi.show()
except ImportError:
pass
return 0