def Execute(self):
if self.Image == None:
self.PrintError("Error: no Image.")
if not self.vmtkRenderer:
self.vmtkRenderer = vmtkrenderer.vmtkRenderer()
self.vmtkRenderer.Initialize()
self.OwnRenderer = 1
self.vmtkRenderer.RegisterScript(self)
if self.Type == "freehand":
self.ImageTracerWidget = vtk.vtkImageTracerWidget()
elif self.Type == "contour":
self.ImageTracerWidget = vtk.vtkContourWidget()
self.ImageTracerWidget.SetInteractor(self.vmtkRenderer.RenderWindowInteractor)
self.SliderWidget = vtk.vtkSliderWidget()
self.SliderWidget.SetInteractor(self.vmtkRenderer.RenderWindowInteractor)
self.ImageActor = vtk.vtkImageActor()
self.vmtkRenderer.AddKeyBinding("n", "Next.", self.NextCallback)
self.vmtkRenderer.AddKeyBinding("p", "Previous.", self.PreviousCallback)
self.vmtkRenderer.AddKeyBinding("i", "Interact.", self.InteractCallback)
self.Display()
if self.OwnRenderer:
self.vmtkRenderer.Deallocate()
def Execute(self):
if self.Image == None:
self.PrintError('Error: no Image.')
if not self.vmtkRenderer:
self.vmtkRenderer = vmtkrenderer.vmtkRenderer()
self.vmtkRenderer.Initialize()
self.OwnRenderer = 1
if self.Type == 'freehand':
self.ImageTracerWidget = vtk.vtkImageTracerWidget()
elif self.Type == 'contour':
self.ImageTracerWidget = vtk.vtkContourWidget()
self.ImageTracerWidget.SetInteractor(self.vmtkRenderer.RenderWindowInteractor)
self.SliderWidget = vtk.vtkSliderWidget()
self.SliderWidget.SetInteractor(self.vmtkRenderer.RenderWindowInteractor)
self.ImageActor = vtk.vtkImageActor()
self.vmtkRenderer.RenderWindowInteractor.AddObserver("KeyPressEvent", self.Keypress)
self.Display()
if self.OwnRenderer:
self.vmtkRenderer.Deallocate()
def Execute(self):
if self.Image == None:
self.PrintError('Error: no Image.')
if not self.vmtkRenderer:
self.vmtkRenderer = vmtkrenderer.vmtkRenderer()
self.vmtkRenderer.Initialize()
self.OwnRenderer = 1
self.vmtkRenderer.RegisterScript(self)
if self.Type == 'freehand':
self.ImageTracerWidget = vtk.vtkImageTracerWidget()
elif self.Type == 'contour':
self.ImageTracerWidget = vtk.vtkContourWidget()
self.ImageTracerWidget.SetInteractor(
self.vmtkRenderer.RenderWindowInteractor)
self.SliderWidget = vtk.vtkSliderWidget()
self.SliderWidget.SetInteractor(
self.vmtkRenderer.RenderWindowInteractor)
self.ImageActor = vtk.vtkImageActor()
self.vmtkRenderer.AddKeyBinding('n', 'Next.', self.NextCallback)
self.vmtkRenderer.AddKeyBinding('p', 'Previous.',
self.PreviousCallback)
self.vmtkRenderer.AddKeyBinding('i', 'Interact.',
self.InteractCallback)
self.Display()
if self.OwnRenderer:
self.vmtkRenderer.Deallocate()
def Execute(self):
if self.Image == None:
self.PrintError('Error: no Image.')
if not self.vmtkRenderer:
self.vmtkRenderer = vmtkrenderer.vmtkRenderer()
self.vmtkRenderer.Initialize()
self.OwnRenderer = 1
self.vmtkRenderer.RegisterScript(self)
if self.Type == 'freehand':
self.ImageTracerWidget = vtk.vtkImageTracerWidget()
elif self.Type == 'contour':
self.ImageTracerWidget = vtk.vtkContourWidget()
self.ImageTracerWidget.SetInteractor(self.vmtkRenderer.RenderWindowInteractor)
self.SliderWidget = vtk.vtkSliderWidget()
self.SliderWidget.SetInteractor(self.vmtkRenderer.RenderWindowInteractor)
self.ImageActor = vtk.vtkImageActor()
self.vmtkRenderer.AddKeyBinding('n','Next.',self.NextCallback)
self.vmtkRenderer.AddKeyBinding('p','Previous.',self.PreviousCallback)
self.vmtkRenderer.AddKeyBinding('i','Interact.', self.InteractCallback)
self.Display()
if self.OwnRenderer:
self.vmtkRenderer.Deallocate()
def Execute(self):
if self.Image == None:
self.PrintError('Error: no Image.')
if not self.vmtkRenderer:
self.vmtkRenderer = vmtkrenderer.vmtkRenderer()
self.vmtkRenderer.Initialize()
self.OwnRenderer = 1
if self.Type == 'freehand':
self.ImageTracerWidget = vtk.vtkImageTracerWidget()
elif self.Type == 'contour':
self.ImageTracerWidget = vtk.vtkContourWidget()
self.ImageTracerWidget.SetInteractor(
self.vmtkRenderer.RenderWindowInteractor)
self.SliderWidget = vtk.vtkSliderWidget()
self.SliderWidget.SetInteractor(
self.vmtkRenderer.RenderWindowInteractor)
self.ImageActor = vtk.vtkImageActor()
self.vmtkRenderer.RenderWindowInteractor.AddObserver(
"KeyPressEvent", self.Keypress)
self.Display()
if self.OwnRenderer:
self.vmtkRenderer.Deallocate()
extract.SetVOI(31, 31, 0, 63, 0, 92) extract.SetSampleRate(1, 1, 1) extract.SetInputConnection(shifter.GetOutputPort()) extract.ReleaseDataFlagOff() # imageActor2 = vtk.vtkImageActor() imageActor2.GetMapper().SetInputConnection(extract.GetOutputPort()) imageActor2.VisibilityOn() imageActor2.SetDisplayExtent(31, 31, 0, 63, 0, 92) imageActor2.InterpolateOff() # # Set up the image tracer widget # itw = vtk.vtkImageTracerWidget() # # Set the tolerance for capturing last handle when near first handle # to form closed paths. # itw.SetCaptureRadius(1.5) itw.GetGlyphSource().SetColor(1, 0, 0) # # Set the size of the glyph handle # itw.GetGlyphSource().SetScale(3.0) # # Set the initial rotation of the glyph if desired. The default glyph # set internally by the widget is a '+' so rotating 45 deg. gives a 'x' # itw.GetGlyphSource().SetRotationAngle(45.0)
extract.SetVOI(31, 31, 0, 63, 0, 92) extract.SetSampleRate(1, 1, 1) extract.SetInputConnection(shifter.GetOutputPort()) extract.ReleaseDataFlagOff() # imageActor2 = vtk.vtkImageActor() imageActor2.SetInput(extract.GetOutput()) imageActor2.VisibilityOn() imageActor2.SetDisplayExtent(31, 31, 0, 63, 0, 92) imageActor2.InterpolateOff() # # Set up the image tracer widget # itw = vtk.vtkImageTracerWidget() # # Set the tolerance for capturing last handle when near first handle # to form closed paths. # itw.SetCaptureRadius(1.5) itw.GetGlyphSource().SetColor(1, 0, 0) # # Set the size of the glyph handle # itw.GetGlyphSource().SetScale(3.0) # # Set the initial rotation of the glyph if desired. The default glyph # set internally by the widget is a '+' so rotating 45 deg. gives a 'x' # itw.GetGlyphSource().SetRotationAngle(45.0)
def __init__(self, parent, id=-1, title="", name=""):
"""Populates the menu and adds all required panels
"""
wx.Frame.__init__(self,
parent,
id=id,
title=title,
pos=wx.DefaultPosition,
size=(1800, 830),
name=name) #1000,875
self.menubar = wx.MenuBar()
self.SetMenuBar(self.menubar)
views_menu = wx.Menu()
self.views_default_id = wx.NewId()
views_menu.Append(self.views_default_id, "&Default\tCtrl-D",
"Activate default view layout.", wx.ITEM_NORMAL)
self.views_max_image_id = wx.NewId()
views_menu.Append(self.views_max_image_id,
"&Axial-Sagittal-Coronal View\tCtrl-M",
"Activate maximum image view size layout.",
wx.ITEM_NORMAL)
self.views_contour_view_id = wx.NewId()
views_menu.Append(self.views_contour_view_id,
"&Contour Uncertainty view\tCtrl-C",
"Activate contour uncertainty view size layout.",
wx.ITEM_NORMAL)
self.views_voxel_view_id = wx.NewId()
views_menu.Append(self.views_voxel_view_id,
"&Voxel Uncertainty view\tCtrl-V",
"Activate voxel uncertainty view size layout.",
wx.ITEM_NORMAL)
self.menubar.Append(views_menu, "&Views")
help_menu = wx.Menu()
help_about_id = wx.NewId()
help_menu.Append(help_about_id, "&About\tCtrl-0",
"Info about application.", wx.ITEM_NORMAL)
self.menubar.Append(help_menu, "&Help")
# tell FrameManager to manage this frame
self._mgr = wx.aui.AuiManager()
self._mgr.SetManagedWindow(self)
self._mgr.AddPane(
self._create_patients_pane(),
wx.aui.AuiPaneInfo().Name(
"patient").Caption("Patient Data").Left().BestSize(
wx.Size(600,
400)).MinimizeButton(True).MaximizeButton(True))
self._mgr.AddPane(
self._create_controls_pane(),
wx.aui.AuiPaneInfo().Name(
"control").Caption("Dose Plan Explorer").Bottom().BestSize(
wx.Size(600,
400)).MinimizeButton(True).MaximizeButton(True))
self._mgr.AddPane(
self._create_axial_slices_pane(),
wx.aui.AuiPaneInfo().Name("axial").Caption(
"Axial").Center().BestSize(wx.Size(
400, 400)).CloseButton(False).MaximizeButton(True))
self._mgr.AddPane(
self._create_3D_pane(),
wx.aui.AuiPaneInfo().Name(
"3dview").Caption("3D Dose Plan").Left().BestSize(
wx.Size(1000,
800)).MinimizeButton(True).MaximizeButton(True))
self._mgr.AddPane(
self._create_sagittal_slices_pane(),
wx.aui.AuiPaneInfo().Name(
"sagittal").Caption("Sagittal").Right().BestSize(
wx.Size(400,
400)).MinimizeButton(True).MaximizeButton(True))
self._mgr.AddPane(
self._create_coronal_slices_pane(),
wx.aui.AuiPaneInfo().Name(
"coronal").Caption("Coronal").Right().BestSize(
wx.Size(400,
400)).MinimizeButton(True).MaximizeButton(True))
self._mgr.AddPane(
self._create_barplot_pane(),
wx.aui.AuiPaneInfo().Name(
"overview").Caption("Probability Overview").Bottom().BestSize(
wx.Size(1000,
800)).MinimizeButton(True).MaximizeButton(True))
self._mgr.AddPane(
self._create_probs_pane(),
wx.aui.AuiPaneInfo().Name("probs").Caption(
"Probabilities for Dose Plans").Bottom().BestSize(
wx.Size(1000,
800)).MinimizeButton(True).MaximizeButton(True))
self._mgr.AddPane(
self._create_distplot_pane(),
wx.aui.AuiPaneInfo().Name("distplot").Caption(
"Exploration of dose distribution").Bottom().BestSize(
wx.Size(1000,
800)).MinimizeButton(True).MaximizeButton(True))
self._mgr.AddPane(
self._create_scatterplot_pane(),
wx.aui.AuiPaneInfo().Name("scatterplot").Caption(
"Variability scatterplot").Bottom().BestSize(wx.Size(
1000, 800)).MinimizeButton(True).MaximizeButton(True))
self.SetMinSize(wx.Size(400, 300))
# first we save this default perspective with all panes
# visible
self._perspectives = {}
self._mgr.GetPane("doseplan").Hide()
self._mgr.GetPane("scatterplot").Hide()
self._mgr.GetPane("3dview").Hide()
self._mgr.GetPane("distplot").Hide()
self._perspectives['default'] = self._mgr.SavePerspective()
#------------- Show maximum image view ------------------#
#Show axial,coronal and sagittal panes
self._mgr.GetPane("axial").Show()
self._mgr.GetPane("coronal").Show()
self._mgr.GetPane("sagittal").Show()
#Hide all the others
self._mgr.GetPane("patient").Hide()
self._mgr.GetPane("control").Hide()
self._mgr.GetPane("overview").Hide()
self._mgr.GetPane("probs").Hide()
self._mgr.GetPane("3dview").Hide()
self._mgr.GetPane("scatterplot").Hide()
self._mgr.GetPane("distplot").Hide()
# save the perspective again
self._perspectives['max_image'] = self._mgr.SavePerspective()
#------------- Show contour uncertainty view ------------------#
#Show axial, coronal, sagittal, control, overview and probabilities panes
self._mgr.GetPane("axial").Show()
self._mgr.GetPane("coronal").Right()
self._mgr.GetPane("coronal").Show()
self._mgr.GetPane("sagittal").Right()
self._mgr.GetPane("sagittal").Show()
self._mgr.GetPane("control").Show()
self._mgr.GetPane("overview").Show()
self._mgr.GetPane("probs").Show()
#Hide all the others
self._mgr.GetPane("patient").Hide()
self._mgr.GetPane("3dview").Hide()
self._mgr.GetPane("scatterplot").Hide()
self._mgr.GetPane("distplot").Hide()
self._perspectives['contour_view'] = self._mgr.SavePerspective()
#------------- Show voxel uncertainty view ------------------#
#Show 3dview, scatterplot, axial and distplot panes
self._mgr.GetPane("axial").Left().Center()
self._mgr.GetPane("axial").Show()
self._mgr.GetPane("3dview").Left().Center()
self._mgr.GetPane("3dview").Show()
self._mgr.GetPane("distplot").Right()
self._mgr.GetPane("distplot").Show()
self._mgr.GetPane("scatterplot").Right()
self._mgr.GetPane("scatterplot").Show()
self._mgr.GetPane("patient").Hide()
self._mgr.GetPane("control").Hide()
self._mgr.GetPane("coronal").Hide()
self._mgr.GetPane("sagittal").Hide()
self._mgr.GetPane("probs").Hide()
self._mgr.GetPane("overview").Hide()
self._perspectives['voxel_view'] = self._mgr.SavePerspective()
# and put back the default perspective / view
self._mgr.LoadPerspective(self._perspectives['default'])
# finally tell the AUI manager to do everything that we've
# asked
self._mgr.Update()
#Bind the events
self.Bind(wx.EVT_MENU, self.onAbout, id=help_about_id)
self.patients = {}
self.contours = {}
#sns.plt.close(self.figure)
self.CreateStatusBar()
self.SetStatusText("Status information can be find here...")
self.new_pat = None
self.aboutbox = None
self.tracer = vtk.vtkImageTracerWidget()
self.tracer.SetCaptureRadius(10.5)
self.tracer.GetGlyphSource().SetColor(1, 0, 0)
self.tracer.GetGlyphSource().SetScale(
1.0) # set the size of the glyph handle
# Set the initial rotation of the glyph if desired. The default glyph
# set internally by the widget is a '+' so rotating 45 deg. gives a 'x'
self.tracer.GetGlyphSource().SetRotationAngle(90.0)
self.tracer.GetGlyphSource().Modified()
self.tracer.GetLineProperty().SetColor(1, 0, 0)
self.tracer.SetPriority(1)
self.tracer.AutoCloseOn()
self.tracer.IsClosed()
self.dc = None
self.cursor_dist = None
