def initUI(self):
self.planes = vtk.vtkPlanes()
self.ren = vtk.vtkRenderer()
self.vtkWidget.GetRenderWindow().AddRenderer(self.ren)
self.vtkWidget.GetRenderWindow().GetInteractor().SetInteractorStyle(
MainInteractorStyle())
self.iren = self.vtkWidget.GetRenderWindow().GetInteractor()
self.drawPoint = [[0, 0, 0], [360, 0, 0]]
self.loadFile(self._filePath)
#================Draw CoordLine================
self.lineSource = vtk.vtkLineSource()
self.targetPoint = vtk.vtkSphereSource()
self.incidencePoint = vtk.vtkSphereSource()
self.drawCoordLine()
self.drawCoordPoint()
self.initCutPlane()
self.initCutSlider()
self.initText()
# self.initBoxWidget()
pass
def AutoClip(self):
# Check to see if ClipsIn is provided
if self.ClipsIn == None:
self.PrintError('Error: no AutoClip without ClipsIn')
# Init AutoClipper/Function
AutoClipper = vtk.vtkClipPolyData()
AutoClipFunction = vtk.vtkPlanes()
AutoClipper.SetInputData(self.Surface)
AutoClipper.GenerateClippedOutputOn()
AutoClipper.SetInsideOut(self.InsideOut)
AutoClipper.SetClipFunction(AutoClipFunction)
# Perform ClipFunction while ClipsIn is not empty
while not self.ClipsIn.GetNumberOfBlocks() == 0:
Bounds = self.NextBlockBounds()
self.PrintLog('Bounds for AutoClip are: ' + str(Bounds))
AutoClipFunction.SetBounds(Bounds)
AutoClipper.Update()
self.Surface.DeepCopy(AutoClipper.GetOutput())
import pdb; pdb.set_trace()
self.CleanAutoClip()
self.PrintLog('AutoClip complete.')
def cut_with_planes(obj):
#This function take a obj (vtk source) and cuts it with a plane defined by normal and point.
num_cuts = 40
rad_tol = 0.5
point_min = obj.GetRadius() - rad_tol
points = vtkPoints()
normals = vtkDoubleArray()
normals.SetNumberOfComponents(3)
for i in range(num_cuts):
normal = make_rand_vector()
point = (point_min + np.random.rand(3) * rad_tol/2) * np.sign(normal)
normals.InsertNextTuple(normal)
points.InsertNextPoint(*point)
#Create vtkPlanes object:
planes = vtkPlanes()
planes.SetPoints(points)
planes.SetNormals(normals)
#Create clipper object:
clipper = vtkClipPolyData()
clipper.SetInputConnection(obj.GetOutputPort())
clipper.SetClipFunction(planes)
#Cut in the positive side of the plane:
# clipper.SetValue(0)
clipper.InsideOutOn()
clipper.Update()
#Returned as cut vtkPolyData:
return clipper.GetOutput()
def __init__(self,viewer, selection_color):
self.viewer = viewer
self.selection_color = selection_color
outline = vtk.vtkOutlineFilter()
if vtk.vtkVersion.GetVTKMajorVersion()<6:
outline.SetInput(self.viewer._polydata)
else:
outline.SetInputData(self.viewer._polydata)
outlineMapper = vtk.vtkPolyDataMapper()
outlineMapper.SetInputConnection(outline.GetOutputPort())
self.box=vtk.vtkActor()
self.box.SetMapper( outlineMapper )
self.box.GetProperty().SetColor(1,1,1)
self.box.PickableOff()
self.SetProp3D(self.box)
self.planes=vtk.vtkPlanes()
self.SetInteractor(viewer.iren)
if vtk.vtkVersion.GetVTKMajorVersion()<6:
self.SetInput(self.viewer._polydata)
else:
self.SetInputData(self.viewer._polydata)
self.SetPlaceFactor(1)
self.PlaceWidget()
self.InsideOutOn()
self.SetRotationEnabled(0)
self.GetPlanes(self.planes)
self.AddObserver("EndInteractionEvent",self.on_select_atoms)
def voiWidgetInteractionCallback(self, o, e):
planes = vtk.vtkPlanes()
o.GetPlanes(planes)
bounds = planes.GetPoints().GetBounds()
# first set bounds
self.controlFrame.voiBoundsText.SetValue(
"(%.2f %.2f %.2f %.2f %.2f %.2f) mm" % bounds)
input_data = self.getPrimaryInput()
if input_data:
ispacing = input_data.GetSpacing()
iorigin = input_data.GetOrigin()
# calculate discrete coords
bounds = planes.GetPoints().GetBounds()
voi = 6 * [0]
# excuse the for loop :)
for i in range(6):
voi[i] = int(
round((bounds[i] - iorigin[i / 2]) / ispacing[i / 2]))
# store the VOI (this is a shallow copy)
self._currentVOI = voi
# display the discrete extent
self.controlFrame.voiExtentText.SetValue("(%d %d %d %d %d %d)" %
tuple(voi))
def voiWidgetInteractionCallback(self, o, e):
planes = vtk.vtkPlanes()
o.GetPlanes(planes)
bounds = planes.GetPoints().GetBounds()
# first set bounds
self.controlFrame.voiBoundsText.SetValue(
"(%.2f %.2f %.2f %.2f %.2f %.2f) mm" %
bounds)
input_data = self.getPrimaryInput()
if input_data:
ispacing = input_data.GetSpacing()
iorigin = input_data.GetOrigin()
# calculate discrete coords
bounds = planes.GetPoints().GetBounds()
voi = 6 * [0]
# excuse the for loop :)
for i in range(6):
voi[i] = int(round((bounds[i] - iorigin[i / 2]) / ispacing[i / 2]))
# store the VOI (this is a shallow copy)
self._currentVOI = voi
# display the discrete extent
self.controlFrame.voiExtentText.SetValue(
"(%d %d %d %d %d %d)" % tuple(voi))
def box_select_points(self, start_pos, end_pos):
aspect = self.model_viewer.viewer.renderer.GetAspect()
frustum_planes = np.zeros(24)
self.model_viewer.viewer.renderer.GetActiveCamera().GetFrustumPlanes(aspect[0] / aspect[1], frustum_planes)
min_pos = np.fmin(start_pos, end_pos)
max_pos = np.fmax(start_pos, end_pos) + 1
# Shift frustum planes inwards to match the box selection
y_world_size = 2.0 * self.model_viewer.viewer.renderer.GetActiveCamera().GetParallelScale()
window_size = self.model_viewer.viewer.renderer.GetSize()
pixel_to_world_scale = y_world_size / window_size[1]
frustum_planes[3] -= pixel_to_world_scale * min_pos[0]
frustum_planes[7] -= pixel_to_world_scale * (window_size[0] - max_pos[0])
frustum_planes[11] -= pixel_to_world_scale * min_pos[1]
frustum_planes[15] -= pixel_to_world_scale * (window_size[1] - max_pos[1])
# For visualization, it's better to set near and far planes from depth of filtered data
planes = vtk.vtkPlanes()
planes.SetFrustumPlanes(frustum_planes)
self.model_viewer.point_cloud_troupe.set_filtering_frustum(planes)
filtered_ids = self.model_viewer.point_cloud_troupe.get_filtered_ids()
if len(filtered_ids) > 0:
dists = self.model_viewer.cached_points[filtered_ids, :].dot(frustum_planes[16:19])
min_dist = np.min(dists)
max_dist = np.max(dists)
range = max_dist - min_dist
range = max(range, 0.01)
frustum_planes[19] = -min_dist + 0.1 * range
frustum_planes[23] = max_dist + 0.1 * range
self.set_roibox(frustum_planes)
else:
self.reset_roibox()
# Potential workaround for http://www.vtk.org/Bug/view.php?id=7823
# self.model_viewer.viewer.renderer.ResetCamera()
self.model_viewer.change_mode(ViewModes.EDIT_BONES)
def main():
colors = vtk.vtkNamedColors()
camera = vtk.vtkCamera()
camera.SetClippingRange(0.1, 0.4)
planesArray = [0] * 24
camera.GetFrustumPlanes(1.0, planesArray)
planes = vtk.vtkPlanes()
planes.SetFrustumPlanes(planesArray)
frustumSource = vtk.vtkFrustumSource()
frustumSource.ShowLinesOff()
frustumSource.SetPlanes(planes)
shrink = vtk.vtkShrinkPolyData()
shrink.SetInputConnection(frustumSource.GetOutputPort())
shrink.SetShrinkFactor(.9)
mapper = vtk.vtkPolyDataMapper()
mapper.SetInputConnection(shrink.GetOutputPort())
back = vtk.vtkProperty()
back.SetColor(colors.GetColor3d("Tomato"))
actor = vtk.vtkActor()
actor.SetMapper(mapper)
actor.GetProperty().EdgeVisibilityOn()
actor.GetProperty().SetColor(colors.GetColor3d("Banana"))
actor.SetBackfaceProperty(back)
# a renderer and render window
renderer = vtk.vtkRenderer()
renderWindow = vtk.vtkRenderWindow()
renderWindow.SetWindowName("Frustum")
renderWindow.AddRenderer(renderer)
# an interactor
renderWindowInteractor = vtk.vtkRenderWindowInteractor()
renderWindowInteractor.SetRenderWindow(renderWindow)
# add the actors to the scene
renderer.AddActor(actor)
renderer.SetBackground(colors.GetColor3d("Silver"))
# Position the camera so that we can see the frustum
renderer.GetActiveCamera().SetPosition(1, 0, 0)
renderer.GetActiveCamera().SetFocalPoint(0, 0, 0)
renderer.GetActiveCamera().SetViewUp(0, 1, 0)
renderer.GetActiveCamera().Azimuth(30)
renderer.GetActiveCamera().Elevation(30)
renderer.ResetCamera()
# render an image (lights and cameras are created automatically)
renderWindow.Render()
# begin mouse interaction
renderWindowInteractor.Start()
def Execute(self):
if self.Surface == None:
self.PrintError('Error: no Surface.')
if self.WidgetType == "box":
self.ClipFunction = vtk.vtkPlanes()
elif self.WidgetType == "sphere":
self.ClipFunction = vtk.vtkSphere()
self.Clipper = vtk.vtkClipPolyData()
self.Clipper.SetInput(self.Surface)
self.Clipper.SetClipFunction(self.ClipFunction)
self.Clipper.GenerateClippedOutputOn()
self.Clipper.InsideOutOn()
if not self.vmtkRenderer:
self.vmtkRenderer = vmtkrenderer.vmtkRenderer()
self.vmtkRenderer.Initialize()
self.OwnRenderer = 1
mapper = vtk.vtkPolyDataMapper()
mapper.SetInput(self.Surface)
mapper.ScalarVisibilityOff()
self.Actor = vtk.vtkActor()
self.Actor.SetMapper(mapper)
self.vmtkRenderer.Renderer.AddActor(self.Actor)
if self.WidgetType == "box":
self.ClipWidget = vtk.vtkBoxWidget()
self.ClipWidget.GetFaceProperty().SetColor(0.6,0.6,0.2)
self.ClipWidget.GetFaceProperty().SetOpacity(0.25)
elif self.WidgetType == "sphere":
self.ClipWidget = vtk.vtkSphereWidget()
self.ClipWidget.GetSphereProperty().SetColor(0.6,0.6,0.2)
self.ClipWidget.GetSphereProperty().SetOpacity(0.25)
self.ClipWidget.GetSelectedSphereProperty().SetColor(0.6,0.0,0.0)
self.ClipWidget.GetSelectedSphereProperty().SetOpacity(0.75)
self.ClipWidget.SetRepresentationToSurface()
self.ClipWidget.SetPhiResolution(20)
self.ClipWidget.SetThetaResolution(20)
self.ClipWidget.SetInteractor(self.vmtkRenderer.RenderWindowInteractor)
self.Display()
self.Transform = vtk.vtkTransform()
self.ClipWidget.GetTransform(self.Transform)
if self.OwnRenderer:
self.vmtkRenderer.Deallocate()
if self.CleanOutput == 1:
cleaner = vtk.vtkCleanPolyData()
cleaner.SetInput(self.Surface)
cleaner.Update()
self.Surface = cleaner.GetOutput()
if self.Surface.GetSource():
self.Surface.GetSource().UnRegisterAllOutputs()
def SelectPolygons(self, widget, event_string):
# As can be seen the callback takes two arguments. The first being the object that generates the event
# and the second argument the event name (which is a string).
self.planes = vtk.vtkPlanes()
self.boxWidget.GetPlanes(self.planes)
self.boundsPlane_presel = self.planes.GetPoints().GetBounds()
return
def Execute(Surface, cl):
if Surface == None:
print 'Error: no Surface.'
sys.exit(0)
# Initialize
Clipper = vtk.vtkClipPolyData()
Clipper.SetInput(Surface)
Clipper.GenerateClippedOutputOn()
Clipper.SetInsideOut(0)
ClipFunction = vtk.vtkPlanes()
Clipper.SetClipFunction(ClipFunction)
Cutter = vtk.vtkCutter()
Cutter.SetInput(Surface)
Cutter.SetCutFunction(ClipFunction)
ClippedSurface = vtk.vtkPolyData()
CutLines = vtk.vtkPolyData()
ClipWidget = vtk.vtkBoxWidget()
ClipWidget.GetFaceProperty().SetColor(0.6,0.6,0.2)
ClipWidget.GetFaceProperty().SetOpacity(0.25)
Transform = vtk.vtkTransform()
ClipWidget.GetTransform(Transform)
for i in range(cl.GetNumberOfLines()):
# TODO: Implement thing here.
# Clean surface
cleaner = vtk.vtkCleanPolyData()
cleaner.SetInput(Surface)
cleaner.Update()
Surface = cleaner.GetOutput()
cleaner = vtk.vtkCleanPolyData()
cleaner.SetInput(ClippedSurface)
cleaner.Update()
ClippedSurface = cleaner.GetOutput()
cleaner = vtk.vtkCleanPolyData()
cleaner.SetInput(CutLines)
cleaner.Update()
stripper = vtk.vtkStripper()
stripper.SetInput(cleaner.GetOutput())
stripper.Update()
CutLines = stripper.GetOutput()
if Surface.GetSource():
Surface.GetSource().UnRegisterAllOutputs()
if __name__=='__main__':
surface = read_command_line()
Execute()
def executeClip( self, caller=None, event=None ):
planes = vtk.vtkPlanes(); np = 6
self.clipper.GetPlanes(planes)
if not self.cropRegion: self.cropRegion = [0.0]*np
for ip in range( np ):
plane = planes.GetPlane( ip )
o = plane.GetOrigin()
self.cropRegion[ip] = o[ ip/2 ]
self.cropVolume()
def executeClip( self, caller=None, event=None ):
planes = vtk.vtkPlanes(); np = 6
self.clipper.GetPlanes(planes)
if not self.cropRegion: self.cropRegion = [0.0]*np
for ip in range( np ):
plane = planes.GetPlane( ip )
o = plane.GetOrigin()
self.cropRegion[ip] = o[ ip/2 ]
self.cropVolume()
def Execute(self):
if (self.Surface == None):
self.PrintError('Error: no Surface.')
if self.WidgetType == "box":
self.ClipFunction = vtk.vtkPlanes()
elif self.WidgetType == "sphere":
self.ClipFunction = vtk.vtkSphere()
self.Clipper = vtk.vtkClipPolyData()
self.Clipper.SetInput(self.Surface)
self.Clipper.SetClipFunction(self.ClipFunction)
self.Clipper.GenerateClippedOutputOn()
self.Clipper.InsideOutOn()
if not self.vmtkRenderer:
self.vmtkRenderer = vmtkrenderer.vmtkRenderer()
self.vmtkRenderer.Initialize()
self.OwnRenderer = 1
mapper = vtk.vtkPolyDataMapper()
mapper.SetInput(self.Surface)
mapper.ScalarVisibilityOff()
self.Actor = vtk.vtkActor()
self.Actor.SetMapper(mapper)
self.vmtkRenderer.Renderer.AddActor(self.Actor)
if self.WidgetType == "box":
self.ClipWidget = vtk.vtkBoxWidget()
self.ClipWidget.GetFaceProperty().SetColor(0.6, 0.6, 0.2)
self.ClipWidget.GetFaceProperty().SetOpacity(0.25)
elif self.WidgetType == "sphere":
self.ClipWidget = vtk.vtkSphereWidget()
self.ClipWidget.GetSphereProperty().SetColor(0.6, 0.6, 0.2)
self.ClipWidget.GetSphereProperty().SetOpacity(0.25)
self.ClipWidget.GetSelectedSphereProperty().SetColor(0.6, 0.0, 0.0)
self.ClipWidget.GetSelectedSphereProperty().SetOpacity(0.75)
self.ClipWidget.SetRepresentationToSurface()
self.ClipWidget.SetPhiResolution(20)
self.ClipWidget.SetThetaResolution(20)
self.ClipWidget.SetInteractor(self.vmtkRenderer.RenderWindowInteractor)
self.Display()
if self.OwnRenderer:
self.vmtkRenderer.Deallocate()
if self.CleanOutput == 1:
cleaner = vtk.vtkCleanPolyData()
cleaner.SetInput(self.Surface)
cleaner.Update()
self.Surface = cleaner.GetOutput()
if self.Surface.GetSource():
self.Surface.GetSource().UnRegisterAllOutputs()
def createContent( self ):
input = self.module.inputModule.getOutput()
self.boxWidget = vtk.vtkBoxWidget()
self.boxWidget.SetRotationEnabled(0)
self.boxWidget.SetPlaceFactor(1.0)
self.boxWidget.SetInput( input )
self.planes = vtk.vtkPlanes()
self.boxWidget.AddObserver("StartInteractionEvent", self.startConfiguration )
self.boxWidget.AddObserver("InteractionEvent", self.updateConfiguration )
self.boxWidget.AddObserver("EndInteractionEvent", self.endConfiguration )
def __init__( self, parent, imode_callback, rmode_callback, ppos_callback, ao, **kwargs ):
# initialize Panel
if 'id' not in kwargs:
kwargs['id'] = wx.ID_ANY
wx.Panel.__init__( self, parent, **kwargs )
self.setInteractionMode = imode_callback
self.setInteractionMode(True)
self.recordingMode = False
self.setRecordingMode = rmode_callback
self.setRecordingMode(False)
self.setPickerPos = ppos_callback
self.ao = ao
self.aa = False
self.firstRender = True
self.vtkWidget = wxVTKRenderWindowInteractor(self, wx.ID_ANY)
self.iren = self.vtkWidget._Iren
self.iren.SetInteractorStyle(vtk.vtkInteractorStyleTrackballCamera())
self.renderer = vtk.vtkRenderer()
self.renderer.SetBackground(0,0,0)
self.imageLayer = {}
self.CISID = -1 # Current Image Set ID
self.imageLayer[self.CISID] = IBCRenderer(self.renderer, self.iren.Render)
self.bacteriaLayer = BacteriaLayer(self.renderer, self.iren.Render)
self.viewCamActive = True
# for interactive clipping
self.planes = vtk.vtkPlanes()
self.ellipsoid = None
self.ellipsoidTextActor = None
# The SetInteractor method is how 3D widgets are associated with the
# render window interactor. Internally, SetInteractor sets up a bunch
# of callbacks using the Command/Observer mechanism (AddObserver()).
self.boxWidget = vtk.vtkBoxWidget()
self.boxWidget.SetInteractor(self.iren)
self.boxWidget.SetPlaceFactor(1.0)
# init vtk window
self.vtkWidget.Enable(1)
self.vtkWidget.AddObserver("ExitEvent", lambda o,e,f=parent: f.Close())
self.vtkWidget.GetRenderWindow().AddRenderer(self.renderer)
# Bind VTK events
self.iren.AddObserver("KeyPressEvent", self.OnKeyDown)
self.Sizer = wx.BoxSizer()
self.Sizer.Add(self.vtkWidget, 1, wx.EXPAND)
def _the_callback(box_widget, event_id):
the_box = pyvista.PolyData()
box_widget.GetPolyData(the_box)
planes = vtk.vtkPlanes()
box_widget.GetPlanes(planes)
if hasattr(callback, '__call__'):
if use_planes:
try_callback(callback, planes)
else:
try_callback(callback, the_box)
return
def set_region_of_interest(self, planes_vector):
if planes_vector is None:
self.planes_troupe.set_visible(False)
if self.point_cloud_troupe is not None:
self.point_cloud_troupe.set_filtering_frustum(None)
else:
planes = vtk.vtkPlanes()
planes.SetFrustumPlanes(planes_vector)
if self.point_cloud_troupe is not None:
self.point_cloud_troupe.set_filtering_frustum(planes)
self.planes_troupe.set_planes(planes)
self.planes_troupe.set_visible(True)
def set_region_of_interest(self, planes_vector):
if planes_vector is None:
self.planes_troupe.set_visible(False)
if self.point_cloud_troupe is not None:
self.point_cloud_troupe.set_filtering_frustum(None)
else:
planes = vtk.vtkPlanes()
planes.SetFrustumPlanes(planes_vector)
if self.point_cloud_troupe is not None:
self.point_cloud_troupe.set_filtering_frustum(planes)
self.planes_troupe.set_planes(planes)
self.planes_troupe.set_visible(True)
def generate_actors(data, gradient_magnitude, iso_values, cmap, clip):
# contour
iso = vtk.vtkContourFilter()
iso.SetInputConnection(data.GetOutputPort())
if (iso_values):
[
iso.SetValue(index, value)
for (index, value) in enumerate(iso_values)
]
else:
iso.SetValue(0, max / 4)
#probe
probe = vtk.vtkProbeFilter()
probe.SetInputConnection(iso.GetOutputPort())
probe.SetSourceConnection(gradient_magnitude.GetOutputPort())
# generate vtkPlanes stuff.
origins = generate_plane_origins(clip)
normals = generate_plane_normals()
# the list of planes
planes = vtk.vtkPlanes()
planes.SetPoints(origins)
planes.SetNormals(normals)
planes.GetPlane(0, xplane)
planes.GetPlane(1, yplane)
planes.GetPlane(2, zplane)
xclipper = vtk.vtkClipPolyData()
xclipper.SetInputConnection(probe.GetOutputPort())
xclipper.SetClipFunction(xplane)
yclipper = vtk.vtkClipPolyData()
yclipper.SetInputConnection(xclipper.GetOutputPort())
yclipper.SetClipFunction(yplane)
zclipper = vtk.vtkClipPolyData()
zclipper.SetInputConnection(yclipper.GetOutputPort())
zclipper.SetClipFunction(zplane)
ctf = generate_ctf(cmap)
clipMapper = vtk.vtkDataSetMapper()
clipMapper.SetLookupTable(ctf)
clipMapper.SetInputConnection(zclipper.GetOutputPort())
clipMapper.SetScalarRange(0, 255)
# Generate iso surface actor from iso surface mapper.
isoActor = vtk.vtkActor()
isoActor.SetMapper(clipMapper)
return [isoActor]
def resetClippingBox(self): """ Resets position and shape of the clipping box. """ # Reset the planes by setting identity transform transform = vtkTransform() self.clippingBox.SetTransform(transform) # Make sure the mapper is informed of the changes planes = vtkPlanes() self.clippingBox.GetPlanes(planes) self._updateMapperWithClippingPlanes(planes)
def __init__(self, data_dir, reader):
tfun = vtk.vtkPiecewiseFunction()
tfun.AddPoint(2440.0, 0.0)
tfun.AddPoint(2800.0, 0.85)
ctfun = vtk.vtkColorTransferFunction()
ctfun.AddRGBPoint(0.0, 0.5, 0.0, 0.0)
ctfun.AddRGBPoint(600.0, 1.0, 0.5, 0.5)
ctfun.AddRGBPoint(1280.0, 0.9, 0.2, 0.3)
ctfun.AddRGBPoint(1960.0, 0.81, 0.27, 0.1)
ctfun.AddRGBPoint(4095.0, 0.5, 0.5, 0.5)
volumeMapper = vtk.vtkGPUVolumeRayCastMapper()
volumeMapper.SetInputConnection(reader.GetOutputPort())
volumeMapper.SetBlendModeToComposite()
volumeProperty = vtk.vtkVolumeProperty()
#volumeProperty.SetColor(ctfun)
volumeProperty.SetScalarOpacity(tfun)
volumeProperty.SetInterpolationTypeToLinear()
#volumeProperty.ShadeOn()
newvol = vtk.vtkVolume()
newvol.SetMapper(volumeMapper)
newvol.SetProperty(volumeProperty)
# The SetInteractor method is how 3D widgets are associated with the
# render window interactor. Internally, SetInteractor sets up a bunch
# of callbacks using the Command/Observer mechanism (AddObserver()).
boxWidget = vtk.vtkBoxWidget()
#boxWidget.SetInteractor(iren)
boxWidget.SetPlaceFactor(1.0)
# The implicit function vtkPlanes is used in conjunction with the
# volume ray cast mapper to limit which portion of the volume is
# volume rendered.
planes = vtk.vtkPlanes()
self.planes = planes
def ClipVolumeRender(obj, event):
#global self.planes, volumeMapper
obj.GetPlanes(self.planes)
volumeMapper.SetClippingPlanes(self.planes)
# Place the interactor initially. The output of the reader is used to
# place the box widget.
boxWidget.SetInputConnection(reader.GetOutputPort())
boxWidget.PlaceWidget()
boxWidget.InsideOutOn()
boxWidget.AddObserver("InteractionEvent", ClipVolumeRender)
self.boxWidget = boxWidget
def clipVTKDataWithBox(vtkData, bounds):
planes = vtk.vtkPlanes()
planes.SetBounds(bounds)
clipper = vtk.vtkClipPolyData()
if vtk.VTK_MAJOR_VERSION <= 5:
clipper.SetInput(vtkData)
else:
clipper.SetInputData(vtkData)
clipper.SetClipFunction(planes)
clipper.SetValue(0.0)
clipper.InsideOutOn()
clipper.Update()
vtkDataClipped = clipper.GetOutput()
return vtkDataClipped
def __init__(self, actorlist, volumelist):
self.render = vtk.vtkRenderer()
self.renWindow = vtk.vtkRenderWindow()
self.renWindow.AddRenderer(self.render)
self.interactor = vtk.vtkRenderWindowInteractor()
self.interactor.SetRenderWindow(self.renWindow)
self.actorstoadd = actorlist
self.volumestoadd = volumelist
self.t = vtk.vtkTransform()
self.box = vtk.vtkBoxWidget()
self.planes = vtk.vtkPlanes()
self.clipper = vtk.vtkClipPolyData()
self.selectMapper = vtk.vtkPolyDataMapper()
self.selectActor = vtk.vtkLODActor()
def _the_callback(box_widget, event_id):
the_box = pyvista.PolyData()
box_widget.GetPolyData(the_box)
planes = vtk.vtkPlanes()
box_widget.GetPlanes(planes)
if hasattr(callback, '__call__'):
if use_planes:
args = [planes]
else:
args = [the_box]
if pass_widget:
args.append(box_widget)
try_callback(callback, *args)
return
def clipVolumeRender(self, obj, evt, *args): """ clip the module based on the given clipping planes """ modules = self.getModulesToClip() planes = vtk.vtkPlanes() obj.GetPlanes(planes) for mapper in self.clippedMappers: mapper.RemoveAllClippingPlanes() self.clippedMappers = [] for module in modules: if hasattr(module, "mapper") and hasattr(module.mapper, "SetClippingPlanes"): module.mapper.SetClippingPlanes(planes) self.clippedMappers.append(module.mapper)
def generate_actors(data, val, clip):
# contour
global iso
iso.SetInputConnection(data.GetOutputPort())
if (val):
iso.SetValue(0, val)
else:
iso.SetValue(0, max / 4)
ctf = vtk.vtkColorTransferFunction()
ctf.AddRGBPoint(min, 31 / 255, 162 / 255, 255 / 255)
ctf.AddRGBPoint(max, 255 / 255, 251 / 255, 19 / 255)
# generate vtkPlanes stuff.
origins = generate_plane_origins(clip)
normals = generate_plane_normals()
# the list of planes
planes = vtk.vtkPlanes()
planes.SetPoints(origins)
planes.SetNormals(normals)
planes.GetPlane(0, xplane)
planes.GetPlane(1, yplane)
planes.GetPlane(2, zplane)
xclipper = vtk.vtkClipPolyData()
xclipper.SetInputConnection(iso.GetOutputPort())
xclipper.SetClipFunction(xplane)
yclipper = vtk.vtkClipPolyData()
yclipper.SetInputConnection(xclipper.GetOutputPort())
yclipper.SetClipFunction(yplane)
zclipper = vtk.vtkClipPolyData()
zclipper.SetInputConnection(yclipper.GetOutputPort())
zclipper.SetClipFunction(zplane)
clipMapper = vtk.vtkDataSetMapper()
clipMapper.SetLookupTable(ctf)
clipMapper.SetInputConnection(zclipper.GetOutputPort())
clipMapper.SetScalarRange(0, 255)
# Generate iso surface actor from iso surface mapper.
isoActor = vtk.vtkActor()
isoActor.SetMapper(clipMapper)
return [isoActor]
def picker_callback(self,obj,event):
extract = vtk.vtkExtractSelectedFrustum()
fPlanes=obj.GetFrustum() #collection of planes based on unscaled display
#scale frustum to account for the zaspect
scaledPlanes=vtk.vtkPlanes()
scaledNormals=vtk.vtkDoubleArray()
scaledNormals.SetNumberOfComponents(3)
scaledNormals.SetNumberOfTuples(6)
scaledOrigins=vtk.vtkPoints()
for j in range(6):
i=fPlanes.GetPlane(j)
k=i.GetOrigin()
q=i.GetNormal()
scaledOrigins.InsertNextPoint(k[0],k[1],k[2]/float(self.Zaspect))
scaledNormals.SetTuple(j,(q[0],q[1],q[2]*float(self.Zaspect)))
scaledPlanes.SetNormals(scaledNormals)
scaledPlanes.SetPoints(scaledOrigins)
extract.SetFrustum(scaledPlanes)
extract.SetInputData(self.vtkPntsPolyData)
extract.Update()
extracted = extract.GetOutput()
ids = vtk.vtkIdTypeArray()
ids = extracted.GetPointData().GetArray("vtkOriginalPointIds")
if ids:
#store them in an array for an undo operation
self.lastSelectedIds=ids
for i in range(ids.GetNumberOfTuples()):
#turn them red
self.colors.SetTuple(ids.GetValue(i),(255,0,0))
self.bool_pnt[ids.GetValue(i)]=False
self.vtkPntsPolyData.GetPointData().SetScalars(self.colors)
self.vtkPntsPolyData.Modified()
self.ui.vtkWidget.update()
#set flag on ui to show that data has been modified
self.unsaved_changes=True
def clipVolumeRender(self, obj, evt, *args):
"""
clip the module based on the given clipping planes
"""
modules = self.getModulesToClip()
planes = vtk.vtkPlanes()
obj.GetPlanes(planes)
for mapper in self.clippedMappers:
mapper.RemoveAllClippingPlanes()
self.clippedMappers = []
for module in modules:
if hasattr(module, "mapper") and hasattr(module.mapper,
"SetClippingPlanes"):
module.mapper.SetClippingPlanes(planes)
self.clippedMappers.append(module.mapper)
def __init__(self):
VTKPythonAlgorithmBase.__init__(self,
nInputPorts=1,
inputType='vtkUnstructuredGrid',
nOutputPorts=1,
outputType='vtkUnstructuredGrid')
self.append_filter = vtk.vtkAppendFilter()
self.append_filter.ReleaseDataFlagOn()
self.triangle_filter = vtk.vtkTriangleFilter()
self.planes = vtk.vtkPlanes()
self.ex = vtk.vtkExtractSelectedFrustum()
self.ex.ReleaseDataFlagOn()
self.poly_pick_data = None
self.renderer = None
def picker_callback(self,obj,event):
extract = vtk.vtkExtractSelectedFrustum()
fPlanes=obj.GetFrustum() #collection of planes based on unscaled display
#scale frustum to account for the zaspect
scaledPlanes=vtk.vtkPlanes()
scaledNormals=vtk.vtkDoubleArray()
scaledNormals.SetNumberOfComponents(3)
scaledNormals.SetNumberOfTuples(6)
scaledOrigins=vtk.vtkPoints()
for j in range(6):
i=fPlanes.GetPlane(j)
k=i.GetOrigin()
q=i.GetNormal()
scaledOrigins.InsertNextPoint(k[0],k[1],k[2]/float(self.Zaspect))
scaledNormals.SetTuple(j,(q[0],q[1],q[2]*float(self.Zaspect)))
scaledPlanes.SetNormals(scaledNormals)
scaledPlanes.SetPoints(scaledOrigins)
extract.SetFrustum(scaledPlanes)
extract.SetInputData(self.vtkPntsPolyData)
extract.Update()
extracted = extract.GetOutput()
ids = vtk.vtkIdTypeArray()
ids = extracted.GetPointData().GetArray("vtkOriginalPointIds")
if ids:
#store them in an array for an undo operation
self.lastSelectedIds=ids
for i in range(ids.GetNumberOfTuples()):
#turn them red
self.colors.SetTuple(ids.GetValue(i),(255,0,0))
self.bool_pnt[ids.GetValue(i)]=False
self.vtkPntsPolyData.GetPointData().SetScalars(self.colors)
self.vtkPntsPolyData.Modified()
self.ui.vtkWidget.update()
#set flag on ui to show that data has been modified
self.unsaved_changes=True
def __init__(self, renwin, volume):
self.renwin = renwin
self.iren = renwin.GetInteractor()
self.mapper = volume.GetMapper()
self.volume = volume
self.SetProp3D(volume)
self.GetOutlineProperty().SetColor(0, 0, 0)
self.planes = vtk.vtkPlanes()
self.SetInteractor(self.iren)
self.SetPlaceFactor(1)
self.PlaceWidget()
self.InsideOutOn()
self.SetRotationEnabled(0)
self.GetPlanes(self.planes)
self.AddObserver("EndInteractionEvent", self.SelectPolygons)
self.inorout = 1
self.show()
self.SelectPolygons()
def Execute(self):
if (self.Mesh == None):
self.PrintError('Error: no Mesh.')
self.Planes = vtk.vtkPlanes()
self.Clipper = vtk.vtkClipDataSet()
self.Clipper.SetInput(self.Mesh)
self.Clipper.SetClipFunction(self.Planes)
self.Clipper.GenerateClippedOutputOn()
self.Clipper.InsideOutOn()
if not self.vmtkRenderer:
self.vmtkRenderer = vmtkrenderer.vmtkRenderer()
self.vmtkRenderer.Initialize()
self.OwnRenderer = 1
self.vmtkRenderer.RegisterScript(self)
mapper = vtk.vtkDataSetMapper()
mapper.SetInput(self.Mesh)
mapper.ScalarVisibilityOff()
self.Actor = vtk.vtkActor()
self.Actor.SetMapper(mapper)
self.vmtkRenderer.Renderer.AddActor(self.Actor)
self.BoxWidget = vtk.vtkBoxWidget()
self.BoxWidget.SetInteractor(self.vmtkRenderer.RenderWindowInteractor)
self.BoxWidget.GetFaceProperty().SetColor(0.6, 0.6, 0.2)
self.BoxWidget.GetFaceProperty().SetOpacity(0.25)
self.vmtkRenderer.AddKeyBinding('i', 'Interact.',
self.InteractCallback)
self.vmtkRenderer.AddKeyBinding('space', 'Clip.', self.ClipCallback)
self.Display()
if self.OwnRenderer:
self.vmtkRenderer.Deallocate()
if self.Mesh.GetSource():
self.Mesh.GetSource().UnRegisterAllOutputs()
def Execute(self):
if (self.Mesh == None):
self.PrintError('Error: no Mesh.')
self.Planes = vtk.vtkPlanes()
self.Clipper = vtk.vtkClipDataSet()
self.Clipper.SetInput(self.Mesh)
self.Clipper.SetClipFunction(self.Planes)
self.Clipper.GenerateClippedOutputOn()
self.Clipper.InsideOutOn()
if not self.vmtkRenderer:
self.vmtkRenderer = vmtkrenderer.vmtkRenderer()
self.vmtkRenderer.Initialize()
self.OwnRenderer = 1
self.vmtkRenderer.RegisterScript(self)
mapper = vtk.vtkDataSetMapper()
mapper.SetInput(self.Mesh)
mapper.ScalarVisibilityOff()
self.Actor = vtk.vtkActor()
self.Actor.SetMapper(mapper)
self.vmtkRenderer.Renderer.AddActor(self.Actor)
self.BoxWidget = vtk.vtkBoxWidget()
self.BoxWidget.SetInteractor(self.vmtkRenderer.RenderWindowInteractor)
self.BoxWidget.GetFaceProperty().SetColor(0.6,0.6,0.2)
self.BoxWidget.GetFaceProperty().SetOpacity(0.25)
self.vmtkRenderer.AddKeyBinding('i','Interact.', self.InteractCallback)
self.vmtkRenderer.AddKeyBinding('space','Clip.', self.ClipCallback)
self.Display()
if self.OwnRenderer:
self.vmtkRenderer.Deallocate()
if self.Mesh.GetSource():
self.Mesh.GetSource().UnRegisterAllOutputs()
def __init__(self,gfx,iso,cropentry,entryval):
self.gfx = gfx
self.entry = cropentry
self.entryval = entryval
self.crpfn=None
self.SetProp3D(gfx.map[0].box)
self.planes=vtk.vtkPlanes()
self.SetInteractor(gfx.iren)
self.SetInput(gfx.map[0].iso.GetOutput())
self.SetPlaceFactor(1)
self.PlaceWidget()
self.InsideOutOn()
self.SetRotationEnabled(0)
self.GetPlanes(self.planes)
self.AddObserver("EndInteractionEvent",self.SelectPolygons)
self.AddObserver("InteractionEvent",self.Update_crop_bounds)
self.inorout=1
self.init_entrys()
(xmin,xmax,ymin,ymax,zmin,zmax)=self.gfx.map[0].box.GetBounds()
spcing=self.gfx.map[0].reader.GetOutput().GetSpacing()
self.old=(nint(xmin/spcing[0]),nint(xmax/spcing[0]),nint(ymin/spcing[1]),nint(ymax/spcing[1]),nint(zmin/spcing[2]),nint(zmax/spcing[2]))
def OnBox(self, event):
boxWidget = vtk.vtkBoxWidget()
# change handle properties
boxWidget.SetHandleSize(0.005) # default is 0.01
boxWidget.SetInteractor(self.widget)
boxWidget.SetPlaceFactor(1.25)
boxWidget.SetInput(self.normals.GetOutput())
boxWidget.PlaceWidget()
boxCallback = self.BoxSelectPolygons()
boxWidget.AddObserver("EndInteractionEvent", boxCallback)
boxWidget.KeyPressActivationOff()
plane = vtk.vtkPlanes()
self.boxes.append(boxWidget)
self.planes[boxWidget.GetAddressAsString('')] = plane
self.region.AddFunction(plane)
newId = self.GateMenu.AppendCheckItem(-1, "Box #" + str(self.boxCount))
self.boxCount = self.boxCount + 1
self.boxIds[newId.GetId()] = boxWidget.GetAddressAsString('')
newId.Check(True)
self.Bind(wx.EVT_MENU, self.OnBoxSelect, newId)
boxWidget.On()
def box_select_points(self, start_pos, end_pos):
aspect = self.model_viewer.viewer.renderer.GetAspect()
frustum_planes = np.zeros(24)
self.model_viewer.viewer.renderer.GetActiveCamera().GetFrustumPlanes(
aspect[0] / aspect[1], frustum_planes)
min_pos = np.fmin(start_pos, end_pos)
max_pos = np.fmax(start_pos, end_pos) + 1
# Shift frustum planes inwards to match the box selection
y_world_size = 2.0 * self.model_viewer.viewer.renderer.GetActiveCamera(
).GetParallelScale()
window_size = self.model_viewer.viewer.renderer.GetSize()
pixel_to_world_scale = y_world_size / window_size[1]
frustum_planes[3] -= pixel_to_world_scale * min_pos[0]
frustum_planes[7] -= pixel_to_world_scale * (window_size[0] -
max_pos[0])
frustum_planes[11] -= pixel_to_world_scale * min_pos[1]
frustum_planes[15] -= pixel_to_world_scale * (window_size[1] -
max_pos[1])
# For visualization, it's better to set near and far planes from depth of filtered data
planes = vtk.vtkPlanes()
planes.SetFrustumPlanes(frustum_planes)
self.model_viewer.point_cloud_troupe.set_filtering_frustum(planes)
filtered_ids = self.model_viewer.point_cloud_troupe.get_filtered_ids()
if len(filtered_ids) > 0:
dists = self.model_viewer.cached_points[filtered_ids, :].dot(
frustum_planes[16:19])
min_dist = np.min(dists)
max_dist = np.max(dists)
range = max_dist - min_dist
range = max(range, 0.01)
frustum_planes[19] = -min_dist + 0.1 * range
frustum_planes[23] = max_dist + 0.1 * range
self.set_roibox(frustum_planes)
else:
self.reset_roibox()
# Potential workaround for http://www.vtk.org/Bug/view.php?id=7823
# self.model_viewer.viewer.renderer.ResetCamera()
self.model_viewer.change_mode(ViewModes.EDIT_BONES)
def _addVolumeCutterTool(vol):
vp = settings.plotter_instance
if not vp.renderer:
save_int = vp.interactive
vp.show(interactive=0)
vp.interactive = save_int
boxWidget = vtk.vtkBoxWidget()
boxWidget.SetInteractor(vp.interactor)
boxWidget.SetPlaceFactor(1.0)
vp.cutterWidget = boxWidget
planes = vtk.vtkPlanes()
def ClipVolumeRender(obj, event):
obj.GetPlanes(planes)
vol.mapper.SetClippingPlanes(planes)
boxWidget.SetInputData(vol.image)
boxWidget.OutlineCursorWiresOn()
boxWidget.GetSelectedOutlineProperty().SetColor(1, 0, 1)
boxWidget.GetOutlineProperty().SetColor(0.1, 0.1, 0.1)
boxWidget.GetOutlineProperty().SetOpacity(0.7)
boxWidget.SetPlaceFactor(1.05)
boxWidget.PlaceWidget()
boxWidget.InsideOutOn()
boxWidget.AddObserver("InteractionEvent", ClipVolumeRender)
colors.printc("Mesh Cutter Tool:", c="m", invert=1)
colors.printc(" Move gray handles to cut away parts of the mesh", c="m")
colors.printc(" Press X to save file to: clipped.vtk", c="m")
vp.renderer.ResetCamera()
boxWidget.On()
vp.interactor.Start()
boxWidget.Off()
vp.widgets.append(boxWidget)
def runGeoJSONCropExample(input_filename, bbox_filename):
inputDataset = loadGeoJSONData(input_filename)
bboxDataset = loadGeoJSONData(bbox_filename)
# Use the bounds from the bounding box to create an implicit function
queryBounds = list(bboxDataset.GetBounds())
bbox = vtk.vtkPlanes()
bbox.SetBounds(queryBounds)
# This filter uses the implicit function to extract the data
bboxFilter = vtk.vtkExtractPolyDataGeometry()
bboxFilter.SetInputData(inputDataset)
bboxFilter.SetImplicitFunction(bbox)
# Exclude (set to 0) or include (set to 1) districts on the boundary
bboxFilter.SetExtractBoundaryCells(0)
# Get the cropped region and write it to disk
bboxFilter.Update()
croppedDataset = bboxFilter.GetOutput()
outputWriter = vtk.vtkGeoJSONWriter()
outputWriter.SetFileName('cropped_output.geojson')
outputWriter.SetInputData(croppedDataset)
outputWriter.Write()
renderer = init()
inputActor = renderPolyData(renderer, inputDataset)
bboxActor = renderPolyData(renderer, bboxDataset)
cropActor = renderPolyData(renderer, croppedDataset)
# Set rendering type and color on the actors
inputActor.GetProperty().SetRepresentationToWireframe()
inputActor.GetProperty().SetColor(0.0, 1.0, 0.0)
bboxActor.GetProperty().SetRepresentationToWireframe()
bboxActor.GetProperty().SetColor(1.0, 0.0, 0.0)
cropActor.GetProperty().SetRepresentationToWireframe()
cropActor.GetProperty().SetColor(1.0, 0.0, 1.0)
run()
def create_frustum(aspect_ratio, fovy, scale, R, t):
camera = vtk.vtkCamera()
camera.SetViewAngle(fovy)
print(t.item(0), t.item(1), t.item(2))
camera.SetPosition(t.item(0), t.item(1), t.item(2))
camera.SetViewUp(R[0][0], R[1][0], R[2][0])
camera.SetFocalPoint(0.0, 0.0, 1.0)
camera.SetClippingRange(1e-9, scale)
planes_array = [0] * 24
camera.GetFrustumPlanes(aspect_ratio, planes_array)
planes = vtk.vtkPlanes()
planes.SetFrustumPlanes(planes_array)
frustumSource = vtk.vtkFrustumSource()
frustumSource.SetPlanes(planes)
extract_edges = vtk.vtkExtractEdges()
extract_edges.SetInputConnection(frustumSource.GetOutputPort())
extract_edges.Update()
return extract_edges.GetOutput()
def __init__(self, gfx, iso, cropentry, entryval):
self.gfx = gfx
self.entry = cropentry
self.entryval = entryval
self.crpfn = None
self.SetProp3D(gfx.map[0].box)
self.planes = vtk.vtkPlanes()
self.SetInteractor(gfx.iren)
self.SetInput(gfx.map[0].iso.GetOutput())
self.SetPlaceFactor(1)
self.PlaceWidget()
self.InsideOutOn()
self.SetRotationEnabled(0)
self.GetPlanes(self.planes)
self.AddObserver("EndInteractionEvent", self.SelectPolygons)
self.AddObserver("InteractionEvent", self.Update_crop_bounds)
self.inorout = 1
self.init_entrys()
(xmin, xmax, ymin, ymax, zmin, zmax) = self.gfx.map[0].box.GetBounds()
spcing = self.gfx.map[0].reader.GetOutput().GetSpacing()
self.old = (nint(xmin / spcing[0]), nint(xmax / spcing[0]),
nint(ymin / spcing[1]), nint(ymax / spcing[1]),
nint(zmin / spcing[2]), nint(zmax / spcing[2]))
def clip(self, plane):
"""Clip the surface against the supplied plane, using a
vtkClipPolyData filter."""
if self.Clipper is None:
self.Clipper = vtk.vtkClipPolyData()
self.Clipper.SetInput(self.Clipped)
pass
# Get the axis-aligned cuboid bounding the surface
bounds = self.Surface.GetBounds()
# (xmin,xmax, ymin,ymax, zmin,zmax)
planes = vtk.vtkPlanes()
planes.SetBounds(*bounds)
# Iterate over BB, find plane with closest normal, replace
# with our plane.
maxDot = -1
maxI = -1
for i in range(planes.GetNumberOfPlanes()):
bound = planes.GetPlane(i)
dot = normalDot(plane, bound)
if dot > maxDot:
maxDot = dot
maxI = i
pass
continue
planes.GetNormals().SetTuple3(maxI, *plane.GetNormal())
planes.GetPoints().SetPoint(maxI, *plane.GetOrigin())
self.Clipper.SetClipFunction(planes)
self.Clipper.GenerateClippedOutputOn()
self.Clipper.InsideOutOn()
self.Clipper.Update()
self.Clipped.DeepCopy(self.Clipper.GetClippedOutput())
self.Clipped.Update()
return
def __init__(self, parent = None):
super(VTKFrame, self).__init__(parent)
self.vtkWidget = QVTKRenderWindowInteractor(self)
vl = QtGui.QVBoxLayout(self)
vl.addWidget(self.vtkWidget)
vl.setContentsMargins(0, 0, 0, 0)
self.ren = vtk.vtkRenderer()
self.ren.SetBackground(0.1, 0.2, 0.4)
self.vtkWidget.GetRenderWindow().AddRenderer(self.ren)
self.iren = self.vtkWidget.GetRenderWindow().GetInteractor()
# Create source
camera = vtk.vtkCamera()
planesArray = [0]*24
camera.GetFrustumPlanes(2, planesArray)
planes = vtk.vtkPlanes()
planes.SetFrustumPlanes(planesArray)
frustumSource = vtk.vtkFrustumSource()
frustumSource.SetPlanes(planes)
frustumSource.Update()
frustum = frustumSource.GetOutput()
mapper = vtk.vtkPolyDataMapper()
mapper.SetInput(frustum)
actor = vtk.vtkActor()
actor.SetMapper(mapper)
self.ren.AddActor(actor)
self.ren.ResetCamera()
self._initialized = False
def clip(self, plane):
"""Clip the surface against the supplied plane, using a
vtkClipPolyData filter."""
if self.Clipper is None:
self.Clipper = vtk.vtkClipPolyData()
self.Clipper.SetInput(self.Clipped)
pass
# Get the axis-aligned cuboid bounding the surface
bounds = self.Surface.GetBounds()
# (xmin,xmax, ymin,ymax, zmin,zmax)
planes = vtk.vtkPlanes()
planes.SetBounds(*bounds)
# Iterate over BB, find plane with closest normal, replace
# with our plane.
maxDot = -1; maxI = -1
for i in range(planes.GetNumberOfPlanes()):
bound = planes.GetPlane(i)
dot = normalDot(plane, bound)
if dot> maxDot:
maxDot = dot
maxI = i
pass
continue
planes.GetNormals().SetTuple3(maxI, *plane.GetNormal())
planes.GetPoints().SetPoint(maxI, *plane.GetOrigin())
self.Clipper.SetClipFunction(planes)
self.Clipper.GenerateClippedOutputOn()
self.Clipper.InsideOutOn()
self.Clipper.Update()
self.Clipped.DeepCopy(self.Clipper.GetClippedOutput())
self.Clipped.Update()
return
def buildPipeline(self):
""" execute() -> None
Dispatch the vtkRenderer to the actual rendering widget
"""
texture_ispec = self.getInputSpec( 1 )
xMin, xMax, yMin, yMax, zMin, zMax = self.input().GetWholeExtent()
self.sliceCenter = [ (xMax-xMin)/2, (yMax-yMin)/2, (zMax-zMin)/2 ]
spacing = self.input().GetSpacing()
sx, sy, sz = spacing
# self.input().SetSpacing( sx, sy, 5*sz )
origin = self.input().GetOrigin()
ox, oy, oz = origin
dataType = self.input().GetScalarTypeAsString()
self.setMaxScalarValue( self.input().GetScalarType() )
self.colorByMappedScalars = False
rangeBounds = self.getRangeBounds()
dr = rangeBounds[1] - rangeBounds[0]
range_offset = .2*dr
self.range = [ rangeBounds[0] + range_offset, rangeBounds[1] - range_offset ]
print "Data Type = %s, range = (%f,%f), range bounds = (%f,%f), max_scalar = %s" % ( dataType, self.range[0], self.range[1], rangeBounds[0], rangeBounds[1], self._max_scalar_value )
self.probeFilter = None
textureRange = self.range
if texture_ispec and texture_ispec.input():
self.probeFilter = vtk.vtkProbeFilter()
textureRange = texture_ispec.input().GetScalarRange()
self.probeFilter.SetSource( texture_ispec.input() )
self.generateTexture = True
if (self.surfacePicker == None):
self.surfacePicker = vtk.vtkPointPicker()
self.levelSetFilter = vtk.vtkContourFilter()
self.inputModule().inputToAlgorithm( self.levelSetFilter )
self.clipPlanes = vtk.vtkPlanes()
self.polyClipper = vtk.vtkClipPolyData()
self.polyClipper.SetInputConnection( self.levelSetFilter.GetOutputPort() )
self.polyClipper.SetClipFunction( self.clipPlanes )
self.polyClipper.InsideOutOn()
self.levelSetMapper = vtk.vtkPolyDataMapper()
self.levelSetMapper.SetColorModeToMapScalars()
if ( self.probeFilter == None ):
imageRange = self.getImageValues( self.range )
self.levelSetMapper.SetInputConnection( self.polyClipper.GetOutputPort() )
self.levelSetMapper.SetScalarRange( imageRange[0], imageRange[1] )
else:
self.probeFilter.SetInputConnection( self.polyClipper.GetOutputPort() )
self.levelSetMapper.SetInputConnection( self.probeFilter.GetOutputPort() )
self.levelSetMapper.SetScalarRange( textureRange )
colormapManager = self.getColormapManager( index=1 ) if texture_ispec and texture_ispec.input() else self.getColormapManager()
colormapManager.setAlphaRange ( self.opacityRange )
self.levelSetMapper.SetLookupTable( colormapManager.lut )
self.levelSetMapper.UseLookupTableScalarRangeOn()
self.updateLevels()
# levelSetMapper.SetColorModeToMapScalars()
# levelSetActor = vtk.vtkLODActor()
self.levelSetActor = vtk.vtkLODActor()
# levelSetMapper.ScalarVisibilityOff()
# levelSetActor.SetProperty( self.levelSetProperty )
self.levelSetActor.SetMapper( self.levelSetMapper )
self.cursorActor = vtk.vtkActor()
self.cursorProperty = None
self.cursor = vtk.vtkSphereSource()
self.cursor.SetRadius(2.0)
self.cursor.SetThetaResolution(8)
self.cursor.SetPhiResolution(8)
self.clipper = vtk.vtkBoxWidget()
self.clipper.RotationEnabledOff()
self.clipper.SetPlaceFactor( 1.0 )
self.clipper.AddObserver( 'StartInteractionEvent', self.startClip )
self.clipper.AddObserver( 'EndInteractionEvent', self.executeClip )
mapper = vtk.vtkPolyDataMapper()
mapper.SetInput(self.cursor.GetOutput())
self.cursorActor.SetMapper(mapper)
self.createDefaultProperties()
# pointData = self.levelSetFilter.GetOutput().GetPointData()
# pointData.SetScalars( colorLevelData )
# if pd <> None:
# na = pd.GetNumberOfArrays()
# print " ** Dataset has %d arrays. ** " % ( pd.GetNumberOfArrays() )
# for i in range( na ): print " --- Array %d: %s " % ( i, str( pd.GetArrayName(i) ) )
# else: print " ** No point data. "
self.renderer.AddActor( self.levelSetActor )
self.surfacePicker.AddPickList( self.levelSetActor )
self.surfacePicker.PickFromListOn()
self.renderer.AddViewProp(self.cursorActor)
self.cursorActor.SetProperty(self.cursorProperty)
self.renderer.SetBackground( VTK_BACKGROUND_COLOR[0], VTK_BACKGROUND_COLOR[1], VTK_BACKGROUND_COLOR[2] )
self.set3DOutput()
def Execute(self):
if self.Mesh == None:
self.PrintError("Error: no Mesh.")
self.Clipper = vtk.vtkClipDataSet()
self.Clipper.SetInput(self.Mesh)
self.Clipper.GenerateClippedOutputOn()
self.Clipper.SetInsideOut(self.InsideOut)
if self.Interactive:
self.Planes = vtk.vtkPlanes()
self.Clipper.SetClipFunction(self.Planes)
self.Cutter = vtk.vtkCutter()
self.Cutter.SetInput(self.Mesh)
self.Cutter.SetCutFunction(self.Planes)
self.ClippedMesh = vtk.vtkUnstructuredGrid()
self.Surface = vtk.vtkPolyData()
if not self.vmtkRenderer:
self.vmtkRenderer = vmtkrenderer.vmtkRenderer()
self.vmtkRenderer.Initialize()
self.OwnRenderer = 1
self.vmtkRenderer.RegisterScript(self)
mapper = vtk.vtkDataSetMapper()
mapper.SetInput(self.Mesh)
mapper.ScalarVisibilityOff()
self.Actor = vtk.vtkActor()
self.Actor.SetMapper(mapper)
self.vmtkRenderer.Renderer.AddActor(self.Actor)
self.BoxWidget = vtk.vtkBoxWidget()
self.BoxWidget.SetInteractor(self.vmtkRenderer.RenderWindowInteractor)
self.BoxWidget.GetFaceProperty().SetColor(0.6, 0.6, 0.2)
self.BoxWidget.GetFaceProperty().SetOpacity(0.25)
self.vmtkRenderer.AddKeyBinding("i", "Interact.", self.InteractCallback)
self.vmtkRenderer.AddKeyBinding("space", "Clip.", self.ClipCallback)
self.Display()
if self.OwnRenderer:
self.vmtkRenderer.Deallocate()
else:
self.Mesh.GetPointData().SetActiveScalars(self.ClipArrayName)
self.Clipper.GenerateClipScalarsOff()
self.Clipper.SetValue(self.ClipValue)
self.Clipper.Update()
self.Cutter = vtk.vtkContourFilter()
self.Cutter.SetInput(self.Mesh)
self.Cutter.SetValue(0, self.ClipValue)
self.Cutter.Update()
self.Mesh = self.Clipper.GetOutput()
self.Surface = self.Cutter.GetOutput()
self.ClippedMesh = self.Clipper.GetClippedOutput()
if self.Mesh.GetSource():
self.Mesh.GetSource().UnRegisterAllOutputs()
def transformCallback(self, arg1, arg2): planes = vtkPlanes() arg1.GetPlanes(planes) self._updateMapperWithClippingPlanes(planes)
color as doubles.
'''
rgb = [0.0, 0.0, 0.0] # black
vtk.vtkNamedColors().GetColorRGB(colorName, rgb)
return rgb
# Create the RenderWindow, Renderer and both Actors
#
ren1 = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.AddRenderer(ren1)
iren = vtk.vtkRenderWindowInteractor()
iren.SetRenderWindow(renWin)
# create cutting planes
planes = vtk.vtkPlanes()
points = vtk.vtkPoints()
norms = vtk.vtkFloatArray()
norms.SetNumberOfComponents(3)
points.InsertPoint(0, 0.0, 0.0, 0.0)
norms.InsertTuple3(0, 0.0, 0.0, 1.0)
points.InsertPoint(1, 0.0, 0.0, 0.0)
norms.InsertTuple3(1, -1.0, 0.0, 0.0)
planes.SetPoints(points)
planes.SetNormals(norms)
# texture
texReader = vtk.vtkStructuredPointsReader()
texReader.SetFileName(VTK_DATA_ROOT + "/Data/texThres2.vtk")
texture = vtk.vtkTexture()
def _updateImagePlanePlacement(self): if not self._clippingPlanesState: return # First get the planes of the clipping box planes = vtkPlanes() self.clippingBox.GetPlanes(planes) # Also get the polydata of the box polyData = vtkPolyData() self.clippingBox.GetPolyData(polyData) # Append a 4th element to the polydata points p = [] for i in range(8): p.append(list(polyData.GetPoint(i)) + [1.0]) # Transform all the polydata points inv = self.transform.GetInverse() for i in range(len(p)): inv.MultiplyPoint(p[i], p[i]) p[i] = p[i][0:3] # Calculate the center of the planes # so that it is possible to figure out where # to place the image planes center = [0, 0, 0] for point in p: center[0] += point[0] center[1] += point[1] center[2] += point[2] center[0] /= len(p) center[1] /= len(p) center[2] /= len(p) # Place the image plane just outside the clipping box for i in range(len(p)): point = p[i] for j in range(3): dist = point[j] - center[j] p[i][j] += (dist / 30.0) # Update the position of all the planes self.planes[0].SetOrigin(p[0]) self.planes[0].SetPoint1(p[4]) self.planes[0].SetPoint2(p[3]) self.planes[1].SetOrigin(p[3]) self.planes[1].SetPoint1(p[7]) self.planes[1].SetPoint2(p[2]) self.planes[2].SetOrigin(p[2]) self.planes[2].SetPoint1(p[6]) self.planes[2].SetPoint2(p[1]) self.planes[3].SetOrigin(p[1]) self.planes[3].SetPoint1(p[5]) self.planes[3].SetPoint2(p[0]) self.planes[4].SetOrigin(p[0]) self.planes[4].SetPoint2(p[3]) self.planes[4].SetPoint1(p[1]) self.planes[5].SetOrigin(p[4]) self.planes[5].SetPoint1(p[7]) self.planes[5].SetPoint2(p[5]) for plane in self.planes: plane.UpdatePlacement()
def __init__(self, parent, data_set):
wxVTKRenderWindowInteractor.__init__(self, parent, -1, size=parent.GetSize())
ren = vtk.vtkRenderer()
self.GetRenderWindow().AddRenderer(ren)
# prob should allow a string as data_set also, but for now assume it's a python or numpy array
#img = self.LoadVolumeData(data_set) # load from filename
img = vtkImageImportFromArray()
img.SetArray(data_set)
pix_diag = 5.0
# volMapper = vtk.vtkVolumeTextureMapper3D()
volMapper = vtk.vtkVolumeRayCastMapper()
compositeFunction = vtk.vtkVolumeRayCastCompositeFunction()
compositeFunction.SetCompositeMethodToInterpolateFirst()
volMapper.SetVolumeRayCastFunction(compositeFunction)
volMapper.SetSampleDistance(pix_diag / 5.0)
volMapper.SetInputConnection(img.GetOutputPort())
# Transfer Functions
self.opacity_tf = vtk.vtkPiecewiseFunction()
self.color_tf = vtk.vtkColorTransferFunction()
# The property describes how the data will look
self.volProperty = volProperty = vtk.vtkVolumeProperty()
volProperty.SetColor(self.color_tf)
volProperty.SetScalarOpacity(self.opacity_tf)
volProperty.ShadeOn()
volProperty.SetInterpolationTypeToLinear()
volProperty.SetScalarOpacityUnitDistance(pix_diag)
vol = vtk.vtkVolume()
vol.SetMapper(volMapper)
vol.SetProperty(volProperty)
ren.AddVolume(vol)
boxWidget = vtk.vtkBoxWidget()
boxWidget.SetInteractor(self)
boxWidget.SetPlaceFactor(1.0)
# The implicit function vtkPlanes is used in conjunction with the
# volume ray cast mapper to limit which portion of the volume is
# volume rendered.
planes = vtk.vtkPlanes()
def ClipVolumeRender(obj, event):
obj.GetPlanes(planes)
volMapper.SetClippingPlanes(planes)
# Place the interactor initially. The output of the reader is used to
# place the box widget.
boxWidget.SetInput(img.GetOutput())
boxWidget.PlaceWidget()
boxWidget.InsideOutOn()
boxWidget.AddObserver("InteractionEvent", ClipVolumeRender)
outline = vtk.vtkOutlineFilter()
outline.SetInputConnection(img.GetOutputPort())
outlineMapper = vtk.vtkPolyDataMapper()
outlineMapper.SetInputConnection(outline.GetOutputPort())
outlineActor = vtk.vtkActor()
outlineActor.SetMapper(outlineMapper)
outlineProperty = boxWidget.GetOutlineProperty()
outlineProperty.SetRepresentationToWireframe()
outlineProperty.SetAmbient(1.0)
outlineProperty.SetAmbientColor(1, 1, 1)
outlineProperty.SetLineWidth(3)
selectedOutlineProperty = boxWidget.GetSelectedOutlineProperty()
selectedOutlineProperty.SetRepresentationToWireframe()
selectedOutlineProperty.SetAmbient(1.0)
selectedOutlineProperty.SetAmbientColor(1, 0, 0)
selectedOutlineProperty.SetLineWidth(3)
ren.AddActor(outlineActor)
style = vtk.vtkInteractorStyleTrackballCamera()
self.SetInteractorStyle(style)
self.t_graph = TransferGraph(self)
self.SetFocus()
# So we know when new values are added / changed on the tgraph
self.t_graph.Connect(-1, -1, wx.wxEVT_COMMAND_SLIDER_UPDATED,
self.OnTGraphUpdate)
self.OnTGraphUpdate(None)
self.lighting = True
# This is the transfer graph
self.t_graph.Show()
def Execute(self):
if self.Surface == None:
self.PrintError('Error: no Surface.')
self.Clipper = vtk.vtkClipPolyData()
self.Clipper.SetInput(self.Surface)
self.Clipper.GenerateClippedOutputOn()
self.Clipper.SetInsideOut(self.InsideOut)
if self.Interactive:
if self.WidgetType == "box":
self.ClipFunction = vtk.vtkPlanes()
elif self.WidgetType == "sphere":
self.ClipFunction = vtk.vtkSphere()
self.Clipper.SetClipFunction(self.ClipFunction)
self.Cutter = vtk.vtkCutter()
self.Cutter.SetInput(self.Surface)
self.Cutter.SetCutFunction(self.ClipFunction)
self.ClippedSurface = vtk.vtkPolyData()
self.CutLines = vtk.vtkPolyData()
if not self.vmtkRenderer:
self.vmtkRenderer = vmtkrenderer.vmtkRenderer()
self.vmtkRenderer.Initialize()
self.OwnRenderer = 1
self.vmtkRenderer.RegisterScript(self)
mapper = vtk.vtkPolyDataMapper()
mapper.SetInput(self.Surface)
mapper.ScalarVisibilityOff()
self.Actor = vtk.vtkActor()
self.Actor.SetMapper(mapper)
self.vmtkRenderer.Renderer.AddActor(self.Actor)
if self.WidgetType == "box":
self.ClipWidget = vtk.vtkBoxWidget()
self.ClipWidget.GetFaceProperty().SetColor(0.6,0.6,0.2)
self.ClipWidget.GetFaceProperty().SetOpacity(0.25)
elif self.WidgetType == "sphere":
self.ClipWidget = vtk.vtkSphereWidget()
self.ClipWidget.GetSphereProperty().SetColor(0.6,0.6,0.2)
self.ClipWidget.GetSphereProperty().SetOpacity(0.25)
self.ClipWidget.GetSelectedSphereProperty().SetColor(0.6,0.0,0.0)
self.ClipWidget.GetSelectedSphereProperty().SetOpacity(0.75)
self.ClipWidget.SetRepresentationToSurface()
self.ClipWidget.SetPhiResolution(20)
self.ClipWidget.SetThetaResolution(20)
self.ClipWidget.SetInteractor(self.vmtkRenderer.RenderWindowInteractor)
self.vmtkRenderer.AddKeyBinding('space','Clip.',self.ClipCallback)
self.vmtkRenderer.AddKeyBinding('i','Interact.',self.InteractCallback)
self.Display()
self.Transform = vtk.vtkTransform()
self.ClipWidget.GetTransform(self.Transform)
if self.OwnRenderer:
self.vmtkRenderer.Deallocate()
else:
self.Surface.GetPointData().SetActiveScalars(self.ClipArrayName)
self.Clipper.GenerateClipScalarsOff()
self.Clipper.SetValue(self.ClipValue)
self.Clipper.Update()
self.Cutter = vtk.vtkContourFilter()
self.Cutter.SetInput(self.Surface)
self.Cutter.SetValue(0,self.ClipValue)
self.Cutter.Update()
self.Surface = self.Clipper.GetOutput()
self.ClippedSurface = self.Clipper.GetClippedOutput()
self.CutLines = self.Cutter.GetOutput()
if self.CleanOutput == 1:
cleaner = vtk.vtkCleanPolyData()
cleaner.SetInput(self.Surface)
cleaner.Update()
self.Surface = cleaner.GetOutput()
cleaner = vtk.vtkCleanPolyData()
cleaner.SetInput(self.ClippedSurface)
cleaner.Update()
self.ClippedSurface = cleaner.GetOutput()
cleaner = vtk.vtkCleanPolyData()
cleaner.SetInput(self.CutLines)
cleaner.Update()
stripper = vtk.vtkStripper()
stripper.SetInput(cleaner.GetOutput())
stripper.Update()
self.CutLines = stripper.GetOutput()
if self.Surface.GetSource():
self.Surface.GetSource().UnRegisterAllOutputs()
def testInteractorEventRecorder(self):
# Demonstrate how to use the vtkInteractorEventRecorder to play back some
# events.
# Create a mace out of filters.
#
sphere = vtk.vtkSphereSource()
cone = vtk.vtkConeSource()
glyph = vtk.vtkGlyph3D()
glyph.SetInputConnection(sphere.GetOutputPort())
glyph.SetSourceConnection(cone.GetOutputPort())
glyph.SetVectorModeToUseNormal()
glyph.SetScaleModeToScaleByVector()
glyph.SetScaleFactor(0.25)
# The sphere and spikes are appended into a single polydata. This just makes things
# simpler to manage.
apd = vtk.vtkAppendPolyData()
apd.AddInputConnection(glyph.GetOutputPort())
apd.AddInputConnection(sphere.GetOutputPort())
maceMapper = vtk.vtkPolyDataMapper()
maceMapper.SetInputConnection(apd.GetOutputPort())
maceActor = vtk.vtkLODActor()
maceActor.SetMapper(maceMapper)
maceActor.VisibilityOn()
# This portion of the code clips the mace with the vtkPlanes implicit function.
# The clipped region is colored green.
planes = vtk.vtkPlanes()
clipper = vtk.vtkClipPolyData()
clipper.SetInputConnection(apd.GetOutputPort())
clipper.SetClipFunction(planes)
clipper.InsideOutOn()
selectMapper = vtk.vtkPolyDataMapper()
selectMapper.SetInputConnection(clipper.GetOutputPort())
selectActor = vtk.vtkLODActor()
selectActor.SetMapper(selectMapper)
selectActor.GetProperty().SetColor(0, 1, 0)
selectActor.VisibilityOff()
selectActor.SetScale(1.01, 1.01, 1.01)
# Create the RenderWindow, Renderer and both Actors
#
ren = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.AddRenderer(ren)
iRen = vtk.vtkRenderWindowInteractor()
iRen.SetRenderWindow(renWin);
#iren = vtk.vtkRenderWindowInteractor()
#iren.SetRenderWindow(renWin)
iRen.AddObserver("ExitEvent", sys.exit)
# The SetInteractor method is how 3D widgets are associated with the render
# window interactor. Internally, SetInteractor sets up a bunch of callbacks
# using the Command/Observer mechanism (AddObserver()).
ren.AddActor(maceActor)
ren.AddActor(selectActor)
# Add the actors to the renderer, set the background and size
#
ren.SetBackground(0.1, 0.2, 0.4)
renWin.SetSize(300, 300)
# This does the actual work: updates the vtkPlanes implicit function.
# This in turn causes the pipeline to update.
def SelectPolygons(widget, event_string):
'''
The callback takes two parameters.
Parameters:
widget - the object that generates the event.
event_string - the event name (which is a string).
'''
boxRep.GetPlanes(planes)
selectActor.VisibilityOn()
# Place the interactor initially. The input to a 3D widget is used to
# initially position and scale the widget. The EndInteractionEvent is
# observed which invokes the SelectPolygons callback.
boxRep = vtk.vtkBoxRepresentation()
boxRep.SetPlaceFactor(0.75)
boxRep.PlaceWidget(glyph.GetOutput().GetBounds())
boxWidget = vtk.vtkBoxWidget2()
boxWidget.SetInteractor(iRen)
boxWidget.SetRepresentation(boxRep)
boxWidget.AddObserver("EndInteractionEvent", SelectPolygons)
boxWidget.SetPriority(1)
# record events
recorder = vtk.vtkInteractorEventRecorder()
recorder.SetInteractor(iRen)
recorder.SetFileName(VTK_DATA_ROOT + "/Data/EventRecording.log")
# render the image
iRen.Initialize()
renWin.Render()
#recorder.Record()
recorder.Play()
recorder.Off()
# render and interact with data
renWin.Render()
img_file = "TestInteractorEventRecorder.png"
vtk.test.Testing.compareImage(iRen.GetRenderWindow(), vtk.test.Testing.getAbsImagePath(img_file), threshold=25)
vtk.test.Testing.interact()
def addVol(self, data, header=None):
pix_diag = 5.0/10.0
img = vtkImageImportFromArray()
img.SetArray(data)
img.ConvertIntToUnsignedShortOn()
'''
Origin and Data spacing setting are essential for a normalized volume rendering of
the DWI image volumes
------- dawdling for a long time for addressing the problem that the volume is too thin
and even resorted to pre-resampling of the DWI volumes
'''
#img.GetImport().SetDataSpacing(0.9375, 0.9375, 4.5200)
img.GetImport().SetDataSpacing(header['pixdim'][1:4])
#img.GetImport().SetDataOrigin(128.0, 128.0, 68.50)
img.GetImport().SetDataOrigin(
header['dim'][0]*header['pixdim'][0],
header['dim'][1]*header['pixdim'][1],
header['dim'][2]*header['pixdim'][2])
print img.GetDataExtent()
volMapper = vtk.vtkGPUVolumeRayCastMapper()
compositeFunction = vtk.vtkVolumeRayCastCompositeFunction()
compositeFunction.SetCompositeMethodToInterpolateFirst()
#compositeFunction.SetCompositeMethodToClassifyFirst()
#volMapper.SetVolumeRayCastFunction(compositeFunction)
#volMapper.SetSampleDistance(pix_diag / 5.0)
volMapper.SetImageSampleDistance( .5 )
volMapper.SetSampleDistance(1.0)
volMapper.SetInputConnection( img.GetOutputPort() )
volMapper.SetBlendModeToComposite()
# The property describes how the data will look
self.volProperty = volProperty = vtk.vtkVolumeProperty()
volProperty.SetColor(self.color_tf)
volProperty.SetScalarOpacity(self.opacity_tf)
volProperty.SetGradientOpacity(self.opacity_tf)
if self.parent.lighting:
volProperty.ShadeOn()
#volProperty.SetInterpolationTypeToLinear()
volProperty.SetInterpolationTypeToNearest()
volProperty.SetScalarOpacityUnitDistance(pix_diag/5.0)
vol = vtk.vtkVolume()
vol.SetMapper(volMapper)
vol.SetProperty(volProperty)
self.ren.AddVolume(vol)
boxWidget = vtk.vtkBoxWidget()
boxWidget.SetInteractor(self.parent.m_ui.renderView)
boxWidget.SetPlaceFactor(1.0)
planes = vtk.vtkPlanes()
def ClipVolumeRender(obj, event):
obj.GetPlanes(planes)
volMapper.SetClippingPlanes(planes)
boxWidget.SetInput(img.GetOutput())
boxWidget.PlaceWidget(img.GetOutput().GetBounds())
boxWidget.InsideOutOn()
boxWidget.AddObserver("InteractionEvent", ClipVolumeRender)
outlineProperty = boxWidget.GetOutlineProperty()
outlineProperty.SetRepresentationToWireframe()
outlineProperty.SetAmbient(1.0)
outlineProperty.SetAmbientColor(1, 1, 1)
outlineProperty.SetLineWidth(3)
selectedOutlineProperty = boxWidget.GetSelectedOutlineProperty()
selectedOutlineProperty.SetRepresentationToWireframe()
selectedOutlineProperty.SetAmbient(1.0)
selectedOutlineProperty.SetAmbientColor(1, 0, 0)
selectedOutlineProperty.SetLineWidth(1)
outline = vtk.vtkOutlineFilter()
outline.SetInputConnection(img.GetOutputPort())
outlineMapper = vtk.vtkPolyDataMapper()
outlineMapper.SetInputConnection(outline.GetOutputPort())
outlineActor = vtk.vtkActor()
outlineActor.SetMapper(outlineMapper)
self.ren.AddActor(outlineActor)
self.volnum += 1
def testBoxWidget(self):
# Demonstrate how to use the vtkBoxWidget.
# This script uses a 3D box widget to define a "clipping box" to clip some
# simple geometry (a mace). Make sure that you hit the "W" key to activate the widget.
# create a sphere source
#
sphere = vtk.vtkSphereSource()
cone = vtk.vtkConeSource()
glyph = vtk.vtkGlyph3D()
glyph.SetInputConnection(sphere.GetOutputPort())
glyph.SetSourceConnection(cone.GetOutputPort())
glyph.SetVectorModeToUseNormal()
glyph.SetScaleModeToScaleByVector()
glyph.SetScaleFactor(0.25)
apd = vtk.vtkAppendPolyData()
apd.AddInputConnection(glyph.GetOutputPort())
apd.AddInputConnection(sphere.GetOutputPort())
maceMapper = vtk.vtkPolyDataMapper()
maceMapper.SetInputConnection(apd.GetOutputPort())
maceActor = vtk.vtkLODActor()
maceActor.SetMapper(maceMapper)
maceActor.VisibilityOn()
planes = vtk.vtkPlanes()
clipper = vtk.vtkClipPolyData()
clipper.SetInputConnection(apd.GetOutputPort())
clipper.SetClipFunction(planes)
clipper.InsideOutOn()
selectMapper = vtk.vtkPolyDataMapper()
selectMapper.SetInputConnection(clipper.GetOutputPort())
selectActor = vtk.vtkLODActor()
selectActor.SetMapper(selectMapper)
selectActor.GetProperty().SetColor(0, 1, 0)
selectActor.VisibilityOff()
selectActor.SetScale(1.01, 1.01, 1.01)
# Create the RenderWindow, Renderer and both Actors
#
ren = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.AddRenderer(ren)
iRen = vtk.vtkRenderWindowInteractor()
iRen.SetRenderWindow(renWin);
boxWidget = vtk.vtkBoxWidget()
boxWidget.SetInteractor(iRen)
ren.AddActor(maceActor)
ren.AddActor(selectActor)
# Add the actors to the renderer, set the background and size
#
ren.SetBackground(0.1, 0.2, 0.4)
renWin.SetSize(300, 300)
def SelectPolygons(widget, event_string):
'''
The callback takes two parameters.
Parameters:
widget - the object that generates the event.
event_string - the event name (which is a string).
'''
boxWidget, selectActor
boxWidget.GetPlanes(planes)
selectActor.VisibilityOn()
# place the interactor initially
boxWidget.SetInputConnection(glyph.GetOutputPort())
boxWidget.PlaceWidget()
boxWidget.AddObserver("EndInteractionEvent", SelectPolygons)
# render and interact with data
renWin.Render()
img_file = "TestBoxWidget.png"
vtk.test.Testing.compareImage(iRen.GetRenderWindow(), vtk.test.Testing.getAbsImagePath(img_file), threshold=25)
vtk.test.Testing.interact()
def __init__(self, file_list,spacing_list,feature_type,irad = 1.2, h_th=-200,
glyph_type='sphere', glyph_scale_factor=1,use_field_data=True, opacity_list=[],
color_list=[], lung=[]):
assert feature_type == "ridge_line" or feature_type == "valley_line" \
or feature_type == "ridge_surface" or feature_type == "valley_surface" \
or feature_type == "vessel" or feature_type == "airway" \
or feature_type == "fissure", "Invalid feature type"
if feature_type == "airway":
feature_type = "valley_line"
elif feature_type == "vessel":
feature_type = "ridge_line"
elif feature_type == "fissure":
feature_type = "ridge_surface"
self.mapper_list = list()
self.actor_list = list()
self.glyph_list = list()
self.glyph_type = glyph_type
self.file_list = file_list
self.spacing_list = spacing_list
self.opacity_list = opacity_list
self.irad = irad
self.h_th = h_th
self.color_list = color_list
self.lung = lung
self.use_field_data = use_field_data
self.feature_type = feature_type
self.normal_map=dict()
self.normal_map['ridge_line'] = "hevec0"
self.normal_map['valley_line'] = "hevec2"
self.normal_map['ridge_surface'] = "hevec2"
self.normal_map['valley_surface'] = "hevec0"
self.strength_map=dict()
self.strength_map['ridge_line'] = "h1"
self.strength_map['valley_line'] = "h1"
self.strength_map['ridge_surface'] = "h2"
self.strength_map['valley_surface'] = "h0"
if feature_type == 'ridge_line' or feature_type == 'valley_line':
self.height = irad
self.radius = 0.5
elif feature_type == 'ridge_surface' or feature_type == 'valley_surface':
self.height = 0.5
self.radius = irad
self.min_rad = 0.5
self.max_rad = 6
self.glyph_scale_factor = glyph_scale_factor
self.capture_prefix = ""
self.capture_count = 1
self.image_count = 1
# VTK Objects
self.ren = vtk.vtkOpenGLRenderer()
self.renWin = vtk.vtkRenderWindow()
self.iren = vtk.vtkRenderWindowInteractor()
# Volume rendering objects
self.volumeActor = vtk.vtkVolume()
self.volumeMapper = vtk.vtkVolumeRayCastMapper()
#self.volumeMapper = vtk.vtkGPUVolumeRayCastMapper()
# Variables for the interaction
self.volume_loaded = False
self.volume_added_to_renderer = False
self.volume_size = [0,0,0]
self.particles_loaded = False
self.particles_added_to_renderer = False
self.planeWidgetX = vtk.vtkImagePlaneWidget()
self.planeWidgetY = vtk.vtkImagePlaneWidget()
self.planeWidgetZ = vtk.vtkImagePlaneWidget()
self.lastPlaneWidget = self.planeWidgetX
self.lastPlaneWidgetIndex = 0
self.planeWidgetLayer = [0,0,0]
self.boxWidgetVolume = vtk.vtkBoxWidget()
self.boxWidgetParticles = vtk.vtkBoxWidget()
self.planesParticles = vtk.vtkPlanes()
self.planesParticles.SetBounds(-10000,10000,-10000,10000,-10000,10000); # For some reason planes needs initializaiton
self.planesVolume = vtk.vtkPlanes()
self.planesVolume.SetBounds(-10000,10000,-10000,10000,-10000,10000); # For some reason planes needs initializaiton
