def __init__(self, parent=None):
super(VTKViewer, self).__init__(parent)
self.slicePosition = 0
self.tubeBlocks = None
self.volume = None
self.sliceActor = None
self.hbox = QHBoxLayout(self)
self.sliceView = QVTKRenderWindowInteractor(self)
self.hbox.addWidget(self.sliceView)
self.sliceSlider = SliceSlider(self)
self.hbox.addWidget(self.sliceSlider)
self.volumeView = QVTKRenderWindowInteractor(self)
self.hbox.addWidget(self.volumeView)
self.sliceSlider.slicePosChanged.connect(self.updateSlice)
# vtk-producers and filters
self.producer = vtk.vtkTrivialProducer()
self.reslice = vtk.vtkImageReslice()
self.image2worldTransform = vtk.vtkTransform()
self.tubeProducer = vtk.vtkTrivialProducer()
self.tubeMapper = vtk.vtkCompositePolyDataMapper2()
self.tubeActor = vtk.vtkActor()
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
vtk.vtkTrivialProducer(), 'Processing.',
(), (None,),
replaceDoc=True,
inputFunctions=None, outputFunctions=None)
def extrude (pts, z, h):
cell = vtk.vtkIdList()
vtk_pts = vtk.vtkPoints()
vtk_pts.SetDataTypeToDouble()
[ (vtk_pts.InsertNextPoint(pt[0], pt[1], z), cell.InsertNextId(i)) for i, pt in enumerate(pts) ]
pd = vtk.vtkPolyData()
pd.Allocate(1, 1)
pd.SetPoints(vtk_pts)
pd.InsertNextCell(vtk.VTK_POLYGON, cell)
prod = vtk.vtkTrivialProducer()
prod.SetOutput(pd)
extr = vtk.vtkLinearExtrusionFilter()
extr.SetInputConnection(prod.GetOutputPort())
extr.SetVector(0, 0, h)
pn = vtk.vtkPolyDataNormals()
pn.SetInputConnection(extr.GetOutputPort())
pn.AutoOrientNormalsOn()
return pn
def extrude(pts, z, h):
cell = vtk.vtkIdList()
vtk_pts = vtk.vtkPoints()
vtk_pts.SetDataTypeToDouble()
[(vtk_pts.InsertNextPoint(pt[0], pt[1], z), cell.InsertNextId(i))
for i, pt in enumerate(pts)]
pd = vtk.vtkPolyData()
pd.Allocate(1, 1)
pd.SetPoints(vtk_pts)
pd.InsertNextCell(vtk.VTK_POLYGON, cell)
prod = vtk.vtkTrivialProducer()
prod.SetOutput(pd)
extr = vtk.vtkLinearExtrusionFilter()
extr.SetInputConnection(prod.GetOutputPort())
extr.SetVector(0, 0, h)
pn = vtk.vtkPolyDataNormals()
pn.SetInputConnection(extr.GetOutputPort())
pn.AutoOrientNormalsOn()
return pn
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(self,
module_manager,
vtk.vtkTrivialProducer(),
'Processing.', (), (None, ),
replaceDoc=True,
inputFunctions=None,
outputFunctions=None)
def addMeshToScene(self, mesh):
import smtk
import vtk
import smtk.io.vtk
exprt = smtk.io.vtk.ExportVTKData()
pd = vtk.vtkPolyData()
exprt(mesh, pd)
trivialProducer = vtk.vtkTrivialProducer()
trivialProducer.SetOutput(pd)
return self.addToScene(trivialProducer)
def addMeshToScene(self, mesh):
import smtk
import vtk
import smtk.io.vtk
exprt = smtk.io.vtk.ExportVTKData()
pd = vtk.vtkPolyData()
exprt(mesh, pd)
trivialProducer = vtk.vtkTrivialProducer()
trivialProducer.SetOutput(pd)
return self.addToScene(trivialProducer)
def create_cylinder(r=.5, h=1., res=30):
pts = vtk.vtkPoints()
pts.SetNumberOfPoints(10 * res)
pd = vtk.vtkPolyData()
pd.Allocate(3 * res, 1)
ang = 2 * math.pi / res
ind = 0
for sign in [-1, 1]:
y = sign * h / 2
for i in range(res):
c0, s0 = math.cos(i * ang), math.sin(i * ang)
c1, s1 = math.cos((i + 1) * ang), math.sin((i + 1) * ang)
x0, z0 = round(r * c0, 6), round(r * s0, 6)
x1, z1 = round(r * c1, 6), round(r * s1, 6)
pts.InsertPoint(ind, 0, y, 0)
pts.InsertPoint(ind + 1, x0, y, z0)
pts.InsertPoint(ind + 2, x1, y, z1)
tri = vtk.vtkIdList()
[tri.InsertNextId(ind + j) for j in range(3)]
t = pd.InsertNextCell(vtk.VTK_TRIANGLE, tri)
ind += 3
if sign == 1:
pd.ReverseCell(t)
pts.InsertPoint(ind, x0, -h / 2, z0)
pts.InsertPoint(ind + 1, x0, y, z0)
pts.InsertPoint(ind + 2, x1, y, z1)
pts.InsertPoint(ind + 3, x1, -h / 2, z1)
poly = vtk.vtkIdList()
[poly.InsertNextId(ind + j) for j in range(4)]
pd.InsertNextCell(vtk.VTK_POLYGON, poly)
ind += 4
pd.SetPoints(pts)
prod = vtk.vtkTrivialProducer()
prod.SetOutput(pd)
return prod
def create_cylinder(r=.5, h=1., res=30):
pts = vtk.vtkPoints()
pts.SetNumberOfPoints(10*res)
pd = vtk.vtkPolyData()
pd.Allocate(3*res, 1)
ang = 2*math.pi/res
ind = 0
for sign in [-1, 1]:
y = sign*h/2
for i in range(res):
c0, s0 = math.cos(i*ang), math.sin(i*ang)
c1, s1 = math.cos((i+1)*ang), math.sin((i+1)*ang)
x0, z0 = round(r*c0, 6), round(r*s0, 6)
x1, z1 = round(r*c1, 6), round(r*s1, 6)
pts.InsertPoint(ind, 0, y, 0)
pts.InsertPoint(ind+1, x0, y, z0)
pts.InsertPoint(ind+2, x1, y, z1)
tri = vtk.vtkIdList()
[ tri.InsertNextId(ind+j) for j in range(3) ]
t = pd.InsertNextCell(vtk.VTK_TRIANGLE, tri)
ind += 3
if sign == 1:
pd.ReverseCell(t)
pts.InsertPoint(ind, x0, -h/2, z0)
pts.InsertPoint(ind+1, x0, y, z0)
pts.InsertPoint(ind+2, x1, y, z1)
pts.InsertPoint(ind+3, x1, -h/2, z1)
poly = vtk.vtkIdList()
[ poly.InsertNextId(ind+j) for j in range(4) ]
pd.InsertNextCell(vtk.VTK_POLYGON, poly)
ind += 4
pd.SetPoints(pts)
prod = vtk.vtkTrivialProducer()
prod.SetOutput(pd)
return prod
def process_tre(in_file, out_dir, phi_vals, theta_vals, width, height):
import itk, vtk
from vtk.web.dataset_builder import ImageDataSetBuilder
reader = itk.SpatialObjectReader[3].New()
reader.SetFileName(in_file)
reader.Update()
blocks = vtk.vtkMultiBlockDataSet()
tubeGroup = reader.GetGroup()
for tube in _iter_tubes(tubeGroup):
polydata = _tube_to_polydata(tube)
index = blocks.GetNumberOfBlocks()
blocks.SetBlock(index, polydata)
prod = vtk.vtkTrivialProducer()
prod.SetOutput(blocks)
mapper = vtk.vtkCompositePolyDataMapper2()
mapper.SetInputConnection(prod.GetOutputPort())
cdsa = vtk.vtkCompositeDataDisplayAttributes()
cdsa.SetBlockColor(1, (1, 1, 0))
cdsa.SetBlockColor(2, (0, 1, 1))
mapper.SetCompositeDataDisplayAttributes(cdsa)
window = vtk.vtkRenderWindow()
window.SetSize(width, height)
renderer = vtk.vtkRenderer()
window.AddRenderer(renderer)
actor = vtk.vtkActor()
actor.SetMapper(mapper)
renderer.AddActor(actor)
renderer.ResetCamera()
window.Render()
idb = ImageDataSetBuilder(out_dir, 'image/jpg', {
'type': 'spherical',
'phi': phi_vals,
'theta': theta_vals
})
idb.start(window, renderer)
idb.writeImages()
idb.stop()
def SetInputData(self, data_object):
if self._algorithm is None:
self._algorithm = vtk.vtkTrivialProducer()
self._algorithm.SetOutput(data_object)
self._image_data_object = data_object
if self.__histogram_stats is None:
self.__histogram_stats = vtk.vtkImageHistogramStatistics()
# VTK-6
if vtk.vtkVersion().GetVTKMajorVersion() > 5:
self.__histogram_stats.SetInputConnection(self._algorithm)
else:
self.__histogram_stats.SetInput(self._image_data_object)
def split4(_=False):
r = vtk.vtkSTLReader()
r.SetFileName('Schuerze4.stl')
r.Update()
bnds = Bnds(*r.GetOutput().GetBounds())
y = bnds.y1 / 2
pts = [[bnds.x1 - 1, y, bnds.z1 - 1], [bnds.x2 + 1, y, bnds.z1 - 1],
[bnds.x2 + 1, y, bnds.z2 + 1], [bnds.x1 - 1, y, bnds.z2 + 1]]
if _:
pts.reverse()
cell = vtk.vtkIdList()
vtk_pts = vtk.vtkPoints()
vtk_pts.SetDataTypeToDouble()
[(vtk_pts.InsertNextPoint(pt), cell.InsertNextId(i))
for i, pt in enumerate(pts)]
pd = vtk.vtkPolyData()
pd.Allocate(1, 1)
pd.SetPoints(vtk_pts)
pd.InsertNextCell(vtk.VTK_POLYGON, cell)
prod = vtk.vtkTrivialProducer()
prod.SetOutput(pd)
bf = vtkboolPython.vtkPolyDataBooleanFilter()
bf.SetInputConnection(r.GetOutputPort())
bf.SetInputConnection(1, prod.GetOutputPort())
bf.SetOperModeToDifference()
clean = vtk.vtkCleanPolyData()
clean.SetInputConnection(bf.GetOutputPort())
pn = vtk.vtkPolyDataNormals()
pn.SetInputConnection(clean.GetOutputPort())
pn.AutoOrientNormalsOn()
return pn
def showVolume(self, vtkImageData, preserveState):
'''Shows volume of image.'''
producer = vtk.vtkTrivialProducer()
producer.SetOutput(vtkImageData)
flip = vtk.vtkImageFlip()
# flip over y axis
flip.SetFilteredAxis(1)
flip.SetInputConnection(producer.GetOutputPort())
mapper = vtk.vtkSmartVolumeMapper()
mapper.SetInputConnection(flip.GetOutputPort())
scalarRange = vtkImageData.GetScalarRange()
opacity = vtk.vtkPiecewiseFunction()
opacity.AddPoint(scalarRange[0], 0.2)
opacity.AddPoint(scalarRange[1], 0.9)
color = vtk.vtkColorTransferFunction()
color.AddRGBPoint(scalarRange[0], 0, 0, 0)
color.AddRGBPoint(scalarRange[1], 1, 1, 1)
prop = vtk.vtkVolumeProperty()
prop.ShadeOff()
prop.SetInterpolationType(vtk.VTK_LINEAR_INTERPOLATION)
prop.SetColor(color)
prop.SetScalarOpacity(opacity)
# save tubes and property if preserving state
if preserveState and self.volume:
prop = self.volume.GetProperty()
self.volumeRenderer.RemoveViewProp(self.volume)
else:
self.volumeRenderer.RemoveAllViewProps()
self.volume = vtk.vtkVolume()
self.volume.SetMapper(mapper)
self.volume.SetProperty(prop)
self.volumeRenderer.AddViewProp(self.volume)
self.volumeRenderer.ResetCamera()
15,15,15,17.5,17.5+1e-12,20,20,20]:
s.InsertNextValue(v)
polys=vtk.vtkCellArray()
polys.InsertNextCell(4)
for pid in [0,1,3,2]:
polys.InsertCellPoint(pid)
for cell in [[4,5,7],[5,6,8],[7,10,9],[8,11,10],[7,5,10],[8,10,5]]:
polys.InsertNextCell(3)
for p in cell:
polys.InsertCellPoint(p)
ds=vtk.vtkPolyData()
ds.SetPoints(pts)
ds.GetPointData().SetScalars(s)
ds.SetPolys(polys)
src=vtk.vtkTrivialProducer()
src.SetOutput(ds)
# Generate contour bands
bands = vtk.vtkBandedPolyDataContourFilter()
bands.SetScalarModeToIndex()
bands.GenerateContourEdgesOn()
bands.ClippingOff()
bands.SetInputConnection(src.GetOutputPort())
# This should be handled safely with a warning message
bands.SetNumberOfContours(0)
bands.Update()
# Now add contour values, some of which are equal to point scalars
clip_values=[ 15.0, 16.25, 17.5, 18.75, 20 ]
def TestDataType(dataType, filter):
if rank == 0:
print dataType
s = GetSource(dataType)
da = vtk.vtkIntArray()
da.SetNumberOfTuples(6)
if rank == 0:
try:
ext = s.GetExtent()
except:
ext = (0, -1, 0, -1, 0, -1)
for i in range(6):
da.SetValue(i, ext[i])
contr.Broadcast(da, 0)
ext = []
for i in range(6):
ext.append(da.GetValue(i))
ext = tuple(ext)
tp = vtk.vtkTrivialProducer()
tp.SetOutput(s)
tp.SetWholeExtent(ext)
ncells = vtk.vtkIntArray()
ncells.SetNumberOfTuples(1)
if rank == 0:
ncells.SetValue(0, s.GetNumberOfCells())
contr.Broadcast(ncells, 0)
result = vtk.vtkIntArray()
result.SetNumberOfTuples(1)
result.SetValue(0, 1)
if rank > 0:
if s.GetNumberOfCells() != 0:
result.SetValue(0, 0)
filter.SetInputConnection(tp.GetOutputPort())
filter.UpdateInformation()
filter.SetUpdateExtent(rank, nranks, 0)
filter.Update()
if filter.GetOutput().GetNumberOfCells() != ncells.GetValue(0) / nranks:
result.SetValue(0, 0)
filter.UpdateInformation()
filter.SetUpdateExtent(rank, nranks, 1)
filter.Update()
gl = filter.GetOutput().GetCellData().GetArray(vtk.vtkDataSetAttributes.GhostArrayName())
if not gl:
result.SetValue(0, 0)
else:
rng = gl.GetRange()
if rng[1] != 1:
result.SetValue(0, 0)
resArray = vtk.vtkIntArray()
resArray.SetNumberOfTuples(1)
contr.AllReduce(result, resArray, vtk.vtkCommunicator.MIN_OP)
assert resArray.GetValue(0) == 1
def TestDataType(dataType, filter):
if rank == 0:
print dataType
s = GetSource(dataType)
da = vtk.vtkIntArray()
da.SetNumberOfTuples(6)
if rank == 0:
try:
ext = s.GetExtent()
except:
ext = (0, -1, 0, -1, 0, -1)
for i in range(6):
da.SetValue(i, ext[i])
contr.Broadcast(da, 0)
ext = []
for i in range(6):
ext.append(da.GetValue(i))
ext = tuple(ext)
tp = vtk.vtkTrivialProducer()
tp.SetOutput(s)
tp.SetWholeExtent(ext)
ncells = vtk.vtkIntArray()
ncells.SetNumberOfTuples(1)
if rank == 0:
ncells.SetValue(0, s.GetNumberOfCells())
contr.Broadcast(ncells, 0)
result = vtk.vtkIntArray()
result.SetNumberOfTuples(1)
result.SetValue(0, 1)
if rank > 0:
if s.GetNumberOfCells() != 0:
result.SetValue(0, 0)
filter.SetInputConnection(tp.GetOutputPort())
filter.Update(rank, nranks, 0)
if filter.GetOutput().GetNumberOfCells() != ncells.GetValue(0) / nranks:
result.SetValue(0, 0)
filter.Update(rank, nranks, 1)
gl = filter.GetOutput().GetCellData().GetArray(vtk.vtkDataSetAttributes.GhostArrayName())
if not gl:
result.SetValue(0, 0)
else:
rng = gl.GetRange()
if rng[1] != 1:
result.SetValue(0, 0)
resArray = vtk.vtkIntArray()
resArray.SetNumberOfTuples(1)
contr.AllReduce(result, resArray, vtk.vtkCommunicator.MIN_OP)
assert resArray.GetValue(0) == 1
# Rotate the cube to show the faces being displaced transform = vtk.vtkTransform() transform.Identity() transform.RotateX(45) transform.RotateY(45) transformer = vtk.vtkTransformPolyDataFilter() transformer.SetInputConnection(cube.GetOutputPort()) transformer.SetTransform(transform) transformer.Update() # A trivial multi-block to be used as input for # vtkCompositePolyDataMapper and vtkCompositePolyDataMapper2 mbd = vtk.vtkMultiBlockDataSet() mbd.SetNumberOfBlocks(1) mbd.SetBlock(0, transformer.GetOutput()) source = vtk.vtkTrivialProducer() source.SetOutput(mbd) # Set up the render window and the interactor. renWin = vtk.vtkRenderWindow() renWin.SetSize(600, 400) iren = vtk.vtkRenderWindowInteractor() iren.SetRenderWindow(renWin) mappers = list() actors = list() renderers = list() polyMapper = vtk.vtkPolyDataMapper() polyMapper.SetInputConnection(transformer.GetOutputPort()) mappers.append(polyMapper)
for v in [9,0,0,9, # y==0
3,4,5,3, # y==1
9,5,0,9, # y==2
0,9,9,0]: # y==3
s.InsertNextValue(v)
polys=vtk.vtkCellArray()
for cell in [[0,1,5,4],[2,3,7,6],[8,9,13,12],[10,11,15,14]]:
polys.InsertNextCell(4)
for p in cell:
polys.InsertCellPoint(p)
ds=vtk.vtkPolyData()
ds.SetPoints(pts)
ds.GetPointData().SetScalars(s)
ds.SetPolys(polys)
src=vtk.vtkTrivialProducer()
src.SetOutput(ds)
# Generate contour bands
bands = vtk.vtkBandedPolyDataContourFilter()
bands.SetScalarModeToIndex()
bands.GenerateContourEdgesOn()
bands.ClippingOff()
bands.SetInputConnection(src.GetOutputPort())
# Now add contour values, some of which are equal to point scalars
clip_values=[0,2,4,6,8,10]
for v in clip_values:
bands.SetValue(clip_values.index(v), v)
bands.Update()
def handle_supported_types(writer, typelist, output_type=vtk.VTK_FLOAT):
'''Cast to required type
If the type sent to writer is not in typelist, it will be converted
to output_type.
Args:
writer (vtk.vtkImageWriter): The file writer
typelist (list): List of types supported by this writer
output_type (int): Output type request as fall back
Returns:
Nothing
'''
# Determine input scalar type
input_algorithm = writer.GetInputAlgorithm()
# Input set with SetInputData?
if type(input_algorithm) == type(vtk.vtkTrivialProducer()):
scalar_type = writer.GetInput().GetScalarType()
# Input set with SetInputConnection
else:
input_algorithm.Update()
scalar_type = input_algorithm.GetOutput().GetScalarType()
# Cast if not appropriate
if scalar_type not in typelist:
# If we can cast to float, just cast to float. Otherwise, rescale
# the datatypes.
if output_type != vtk.VTK_FLOAT:
# Hack to get data type range
source = vtk.vtkImageEllipsoidSource()
source.SetWholeExtent(0, 1, 0, 1, 0, 0)
source.SetCenter(10, 10, 0)
source.SetRadius(3, 4, 0)
source.SetOutputScalarType(output_type)
source.Update()
# Compute min/max
scalar_range = input_algorithm.GetOutput().GetScalarRange()
dtype_range = [
source.GetOutput().GetScalarTypeMin(),
source.GetOutput().GetScalarTypeMax()
]
# Note the equation for shift/scale:
# u = (v + ScalarShift)*ScalarScale
m = float(dtype_range[1] -
dtype_range[0]) / float(scalar_range[1] -
scalar_range[0])
b = float(dtype_range[1] - m * scalar_range[1])
b = b / m
caster = vtk.vtkImageReslice()
caster.SetScalarShift(b)
caster.SetScalarScale(m)
else:
caster = vtk.vtkImageCast()
caster.SetInputConnection(input_algorithm.GetOutputPort())
caster.SetOutputScalarType(output_type)
caster.Update()
writer.SetInputConnection(caster.GetOutputPort())
def create_sill4(l):
pr1 = [(0, 0), (1.75, 0), (1.75, 5. / 6 * 1.875), (0, 1.0833)]
pr2 = [(.75, 0), (1.75, 0), (1.75, 5. / 6 * 1.875), (.75, 5. / 6 * 1.875)]
extr1 = extrude(pr1, l + .75 + .54125)
extr2 = extrude(pr2, .54125)
bf = vtkboolPython.vtkPolyDataBooleanFilter()
bf.SetInputConnection(extr1.GetOutputPort())
bf.SetInputConnection(1, extr2.GetOutputPort())
bf.Update()
bnds = Bnds(*bf.GetOutput().GetBounds())
pts = [(bnds.x1 - 2, bnds.y1 - 2, 0), (bnds.x2 + 2, bnds.y1 - 2, 0),
(bnds.x2 + 2, bnds.y2 + 2, 0), (bnds.x1 - 2, bnds.y2 + 2, 0)]
cell = vtk.vtkIdList()
_pts = vtk.vtkPoints()
_pts.SetDataTypeToDouble()
[(_pts.InsertNextPoint(pt), cell.InsertNextId(i))
for i, pt in enumerate(pts[::-1])]
pd = vtk.vtkPolyData()
pd.Allocate(1, 1)
pd.SetPoints(_pts)
pd.InsertNextCell(vtk.VTK_POLYGON, cell)
prod = vtk.vtkTrivialProducer()
prod.SetOutput(pd)
tr = vtk.vtkTransform()
tr.Translate(0, 0, bnds.z2)
tr.RotateY(45)
tp = vtk.vtkTransformPolyDataFilter()
tp.SetTransform(tr)
tp.SetInputConnection(prod.GetOutputPort())
bf2 = vtkboolPython.vtkPolyDataBooleanFilter()
bf2.SetInputConnection(bf.GetOutputPort())
bf2.SetInputConnection(1, tp.GetOutputPort())
bf2.SetOperModeToDifference()
clean = vtk.vtkCleanPolyData()
clean.SetInputConnection(bf2.GetOutputPort())
pn = vtk.vtkPolyDataNormals()
pn.SetInputConnection(clean.GetOutputPort())
pn.AutoOrientNormalsOn()
tr2 = vtk.vtkTransform()
tr2.Translate(1.75, 0, 0)
tr2.RotateZ(180)
tr2.RotateX(90)
tp2 = vtk.vtkTransformPolyDataFilter()
tp2.SetTransform(tr2)
tp2.SetInputConnection(pn.GetOutputPort())
return tp2