def test_should_contain_mutable_samples_sequence(self):
schema_data = schema.Schema()
self.assertEqual([], list(iter(schema_data.samples)))
schema_data.samples.append('sample_name')
self.assertEqual(['sample_name'], list(iter(schema_data.samples)))
schema_data.samples.remove('sample_name')
self.assertEqual([], list(iter(schema_data.samples)))
def test_should_contain_mutable_file_metadata(self):
schema_data = schema.Schema()
self.assertEqual([], list(schema_data.file_metadata.items()))
schema_data.file_metadata['key'] = 'value'
self.assertEqual([('key', 'value')],
list(schema_data.file_metadata.items()))
self.assertEqual('value', schema_data.file_metadata['key'])
del schema_data.file_metadata['key']
self.assertEqual([], list(schema_data.file_metadata.items()))
def test_should_contain_mutable_filter_data(self):
schema_data = schema.Schema()
self.assertEqual([], list(schema_data.iter_filters()))
schema_data.set_filter('key', description='description')
expected_data = fieldmetadata.FilterMetadata(description='description')
self.assertEqual([('key', expected_data)],
list(schema_data.iter_filters()))
self.assertEqual(expected_data, schema_data.get_filter('key'))
schema_data.del_filter('key')
self.assertEqual([], list(schema_data.iter_filters()))
def test_should_contain_mutable_contig_data_with_all_fields(self):
schema_data = schema.Schema()
self.assertEqual([], list(schema_data.iter_contigs()))
schema_data.set_contig('key', length=100000)
expected_data = fieldmetadata.ContigMetadata(length=100000)
self.assertEqual([('key', expected_data)],
list(schema_data.iter_contigs()))
self.assertEqual(expected_data, schema_data.get_contig('key'))
schema_data.del_contig('key')
self.assertEqual([], list(schema_data.iter_contigs()))
def test_should_contain_mutable_sample_data(self):
schema_data = schema.Schema()
self.assertEqual([], list(schema_data.iter_sample_data()))
schema_data.set_sample_data('key',
number=1,
data_type='String',
description='description')
expected_data = fieldmetadata.SampleMetadata(number=1,
data_type='String',
description='description')
self.assertEqual([('key', expected_data)],
list(schema_data.iter_sample_data()))
self.assertEqual(expected_data, schema_data.get_sample_data('key'))
schema_data.del_sample_data('key')
self.assertEqual([], list(schema_data.iter_sample_data()))
def test_should_contain_mutable_info_data_with_all_fields(self):
schema_data = schema.Schema()
self.assertEqual([], list(schema_data.iter_info_data()))
schema_data.set_info_data('key',
number=1,
data_type='String',
description='description',
source='source',
version='version')
expected_data = fieldmetadata.InfoMetadata(number=1,
data_type='String',
description='description',
source='source',
version='version')
self.assertEqual([('key', expected_data)],
list(schema_data.iter_info_data()))
self.assertEqual(expected_data, schema_data.get_info_data('key'))
schema_data.del_info_data('key')
self.assertEqual([], list(schema_data.iter_info_data()))