def INB_downloadPDBfiles(self,directory="/home/inab/databases/flat/pdb", verbose=False):
for pdbIDentry in self.pdbIDs:
if verbose:
print ("%s "% (pdbIDentry[0],))
if not wget.INBPDFFileExists(wget.wgetINBPDBFileName(pdbIDentry[0], directory)):
self.notDownloadedPDBS.append(wget.wgetINBPDBFileName(pdbIDentry[0], directory))
if verbose:
print (" not downloaded \n")
else:
self.downloadedPDBS.append(wget.wgetINBPDBFileName(pdbIDentry[0], directory))
if verbose:
print (" downloaded \n")
def INB_uncompressPDBFiles(self, inputDirectory="/home/inab/databases/flat/pdb", verbose=False):
for pdbIDentry in self.pdbIDs:
if verbose:
print ("%s "% (pdbIDentry[0],))
if not wget.uncompressZCATfiles(wget.wgetINBPDBFileName(pdbIDentry[0],inputDirectory), os.path.join(self.workingDirectory,pdbIDentry[0]+".pdb")):
self.notUncompressedFiles.append(os.path.join(self.workingDirectory,pdbIDentry[0]+".pdb"))
if verbose:
print (" not uncompressed \n")
else:
self.uncompressedFiles.append(os.path.join(self.workingDirectory,pdbIDentry[0]+".pdb"))
if verbose:
print (" uncompressed\n")