def start_SYGMA():
frame = framework.framework()
frame.set_default_display_style(padding="0.25em",
background_color="white",
border_color="LightGrey",
border_radius="0.5em")
frame.set_default_io_style(padding="0.25em",
margin="0.25em",
border_color="LightGrey",
border_radius="0.5em")
tablist = ["sim_page", "plot_page", "custom_imf_page", "get_table_page"]
yield_list = {
"Analytic perscription": {
"Delay":
"yield_tables/isotope_yield_table_MESA_only_fryer12_delay.txt",
"Rapid":
"yield_tables/isotope_yield_table_MESA_only_fryer12_rapid.txt",
"Exclude neutron-alpha rich freeze-out":
"yield_tables/isotope_yield_table_MESA_only_fryer12_exclnalpha.txt"
},
"Ye=0.4982": {
"Fallback at Ye":
"yield_tables/isotope_yield_table_MESA_only_ye.txt",
"Fallback motivated by GCE":
"yield_tables/isotope_yield_table_MESA_only_ye_fallback.txt"
}
}
group_style = {"border_style": "none", "border_radius": "0em"}
text_box_style = {"width": "10em"}
button_style = {"font_size": "1.25em", "font_weight": "bold"}
first_tab_style = {"border_radius": "0em 0.5em 0.5em 0.5em"}
custom_imf_dir = os.environ["SYGMADIR"] + "/SYGMA_widget_imfs/"
default_custom_imf_text = "\n#File to define a custom IMF\n#Define your IMF in custom_imf\n#so that the return value represents\n#the chosen IMF value for the input mass\n\ndef custom_imf(mass):\n #Salpeter IMF\n return mass**-2.35\n"
states_plot = [
"plot_totmasses", "plot_mass", "plot_spectro", "plot_mass_range"
]
states_sim_plot = ["run_sim"] + states_plot
states_cimf = ["custom_imf", "load_custom_imf"]
states = states_sim_plot + states_cimf
frame.add_state(states)
isotopes_all = [
'H-1', 'H-2', 'He-3', 'He-4', 'Li-7', 'B-11', 'C-12', 'C-13', 'N-14',
'N-15', 'O-16', 'O-17', 'O-18', 'F-19', 'Ne-20', 'Ne-21', 'Ne-22',
'Na-23', 'Mg-24', 'Mg-25', 'Mg-26', 'Al-27', 'Si-28', 'Si-29', 'Si-30',
'P-31', 'S-32', 'S-33', 'S-34', 'S-36', 'Cl-35', 'Cl-37', 'Ar-36',
'Ar-38', 'Ar-40', 'K-39', 'K-40', 'K-41', 'Ca-40', 'Ca-42', 'Ca-43',
'Ca-44', 'Ca-46', 'Ca-48', 'Sc-45', 'Ti-46', 'Ti-47', 'Ti-48', 'Ti-49',
'Ti-50', 'V-50', 'V-51', 'Cr-50', 'Cr-52', 'Cr-53', 'Cr-54', 'Mn-55',
'Fe-54', 'Fe-56', 'Fe-57', 'Fe-58', 'Co-59', 'Ni-58', 'Ni-60', 'Ni-61',
'Ni-62', 'Ni-64'
]
elements_all = [
'H', 'He', 'Li', 'B', 'C', 'N', 'O', 'F', 'Ne', 'Na', 'Mg', 'Al', 'Si',
'P', 'S', 'Cl', 'Ar', 'K', 'Ca', 'Sc', 'Ti', 'V', 'Cr', 'Mn', 'Fe',
'Co', 'Ni'
]
isotopes_sn1a = [
'C-12', 'C-13', 'N-14', 'N-15', 'O-16', 'O-17', 'O-18', 'F-19',
'Ne-20', 'Ne-21', 'Ne-22', 'Na-23', 'Mg-24', 'Mg-25', 'Mg-26', 'Al-27',
'Si-28', 'Si-29', 'Si-30', 'P-31', 'S-32', 'S-33', 'S-34', 'S-36',
'Cl-35', 'Cl-37', 'Ar-36', 'Ar-38', 'Ar-40', 'K-39', 'K-40', 'K-41',
'Ca-40', 'Ca-42', 'Ca-43', 'Ca-44', 'Ca-46', 'Ca-48', 'Sc-45', 'Ti-46',
'Ti-47', 'Ti-48', 'Ti-49', 'Ti-50', 'V-50', 'V-51', 'Cr-50', 'Cr-52',
'Cr-53', 'Cr-54', 'Mn-55', 'Fe-54', 'Fe-56', 'Fe-57', 'Fe-58', 'Co-59',
'Ni-58', 'Ni-60', 'Ni-61', 'Ni-62', 'Ni-64'
]
elements_sn1a = [
'C', 'N', 'O', 'F', 'Ne', 'Na', 'Mg', 'Al', 'Si', 'P', 'S', 'Cl', 'Ar',
'K', 'Ca', 'Sc', 'Ti', 'V', 'Cr', 'Mn', 'Fe', 'Co', 'Ni'
]
isotopes_sel_mult = ["All"] + isotopes_all
elements_sel_mult = ["All"] + elements_all
line_styles = ["-", "--", ":", "-."]
# line_colors=["k", "r", "g", "b", "c", "m", "y"]
line_colors = ["k", "r", "b", "c", "m", "y"] #remove "g"
line_markers = ["o", "s", "x", "D", "v", "^", "<", ">", "p", "*", "+"]
styles = auto_styles()
styles.set_line_styles(line_styles)
styles.set_line_colors(line_colors)
styles.set_line_markers(line_markers)
frame.set_state_data("elements", elements_all)
frame.set_state_data("isotopes", isotopes_all)
frame.set_state_data("over_plotting_data", [])
frame.set_state_data("styles", styles)
frame.set_state_data("old_state", None)
frame.set_state_data("runs", [])
frame.set_state_data("run_count", 0)
def add_run(data, name, Z):
run_count = frame.get_state_data("run_count")
runs_data = frame.get_state_data("runs")
widget_name = "runs_widget_#" + str(run_count)
frame.add_io_object(widget_name)
frame.set_state_attribute(widget_name, visible=True, description=name)
frame.set_object(widget_name, widgets.Checkbox())
runs_data.append((data, name, Z, widget_name))
frame.set_state_children("runs", [widget_name])
frame.set_state_data("runs", runs_data)
run_count += 1
frame.set_state_data("run_count", run_count)
def remove_runs():
data = frame.get_state_data("runs")
children = ["runs_title"]
tmp_data = []
for i in xrange(len(data)):
widget_name = data[i][3]
if frame.get_attribute(widget_name, "value"):
frame.remove_object(widget_name)
else:
children.append(widget_name)
tmp_data.append(data[i])
data = tmp_data
frame.set_state_children("runs", children, append=False)
frame.set_state_data("runs", data)
def list_custom_imf():
if os.path.isdir(custom_imf_dir):
files_dirs = os.listdir(custom_imf_dir)
imfs = []
for file in files_dirs:
file_full = custom_imf_dir + file
if os.path.isfile(file_full):
file = file.rsplit(".", 1)
if file[1] == "py":
imfs.append(file[0])
return imfs
else:
return []
frame.add_display_object("window")
frame.add_io_object("title")
frame.add_display_object("widget_runs_group")
frame.add_display_object("widget")
frame.add_display_object("runs")
frame.add_io_object("runs_title")
###Sim page###
frame.add_display_object("sim_page")
frame.add_display_object("mass_Z_group")
frame.add_io_object("init_Z")
frame.add_io_object("mass_gas")
frame.add_display_object("time_group")
frame.add_io_object("t_end")
frame.add_io_object("dt")
frame.add_display_object("imf_type_group")
frame.add_io_object("imf_type")
frame.add_io_object("imf_alpha")
frame.add_display_object("imf_mass_group")
frame.add_io_object("imf_mass_min")
frame.add_io_object("imf_mass_max")
frame.add_display_object("sn1a_group")
frame.add_io_object("use_sn1a")
frame.add_io_object("sn1a_rates")
frame.add_display_object("yield_table_group")
frame.add_io_object("yield_table_selection")
frame.add_io_object("yield_table_list")
frame.add_display_object("run_sim_remove_run_group")
frame.add_io_object("run_sim")
frame.add_io_object("remove_run")
frame.add_io_object("run_name")
frame.add_io_object("plot_type")
frame.add_io_object("sim_responce")
frame.set_state_children("window", ["title", "widget_runs_group"])
frame.set_state_children("widget_runs_group", ["widget", "runs"])
frame.set_state_children("widget", ["sim_page"], titles=["Simulation"])
frame.set_state_children("sim_page", [
"mass_Z_group", "time_group", "imf_type_group", "imf_mass_group",
"sn1a_group", "yield_table_group", "run_sim_remove_run_group",
"sim_responce"
])
frame.set_state_children("mass_Z_group", ["mass_gas", "init_Z"])
frame.set_state_children("time_group", ["t_end", "dt"])
frame.set_state_children("imf_type_group", ["imf_type", "imf_alpha"])
frame.set_state_children("imf_mass_group",
["imf_mass_min", "imf_mass_max"])
frame.set_state_children("sn1a_group", ["use_sn1a", "sn1a_rates"])
frame.set_state_children("yield_table_group",
["yield_table_selection", "yield_table_list"])
frame.set_state_children("run_sim_remove_run_group",
["run_sim", "remove_run", "run_name"])
frame.set_state_children("runs", ["runs_title"])
###plotting page###
frame.add_display_object("plot_page")
frame.add_io_object("warning_msg")
frame.add_io_object("plot_name")
frame.add_display_object("source_over_plotting_group")
frame.add_io_object("source")
frame.add_io_object("over_plotting")
frame.add_io_object("clear_plot")
frame.add_display_object("species_group")
frame.add_io_object("iso_or_elem")
frame.add_io_object("species")
frame.add_io_object("elem_numer")
frame.add_io_object("elem_denom")
frame.add_io_object("plot")
frame.set_state_children("widget", ["plot_page"], titles=["Plotting"])
frame.set_state_children("plot_page", [
"warning_msg", "plot_type", "plot_name", "source_over_plotting_group",
"species_group", "elem_numer", "elem_denom", "plot"
])
frame.set_state_children("source_over_plotting_group",
["source", "over_plotting", "clear_plot"])
frame.set_state_children("species_group", ["iso_or_elem", "species"])
###Custom IMF page###
frame.add_display_object("custom_imf_page")
frame.add_display_object("load_save_imf_group")
frame.add_io_object("load_imf")
frame.add_io_object("list_imfs")
frame.add_io_object("name_imf")
frame.add_io_object("save_imf")
frame.add_io_object("delete_imf")
frame.add_io_object("text_imf")
frame.add_io_object("test_imf")
frame.set_state_children("widget", ["custom_imf_page"],
titles=["Custom IMF"])
frame.set_state_children("custom_imf_page",
["load_save_imf_group", "text_imf", "test_imf"])
frame.set_state_children(
"load_save_imf_group",
["load_imf", "list_imfs", "name_imf", "save_imf", "delete_imf"])
###plotting page###
frame.add_display_object("get_table_page")
frame.add_display_object("species_mult_group")
frame.add_io_object("species_mult")
frame.add_io_object("get_table")
frame.add_io_object("table_links")
frame.set_state_children("widget", ["get_table_page"],
titles=["Download Tables"])
frame.set_state_children(
"get_table_page",
["warning_msg", "species_mult_group", "get_table", "table_links"])
frame.set_state_children("species_mult_group",
["iso_or_elem", "species_mult"])
frame.set_state_attribute('window', visible=True, **group_style)
frame.set_state_attribute('title',
visible=True,
value="<center><h1>SYGMA</h1></center>")
frame.set_state_attribute("widget_runs_group", visible=True, **group_style)
frame.set_state_attribute('widget', visible=True, **group_style)
frame.set_state_attribute("runs",
visible=True,
margin="3.15em 0em 0em 0em")
frame.set_state_attribute("runs", states_cimf, visible=False)
frame.set_state_attribute("runs_title",
visible=True,
value="<center><h2>Runs</h2></center>",
**group_style)
frame.set_state_attribute('sim_page', visible=True, **first_tab_style)
frame.set_state_attribute("mass_Z_group", visible=True, **group_style)
frame.set_state_attribute("mass_gas",
visible=True,
description="Total stellar mass [$M_{\odot}$]:",
value="1.0",
**text_box_style)
frame.set_state_attribute(
'init_Z',
visible=True,
description="Initial metallicity: ",
options=["0.02", "0.01", "0.006", "0.001", "0.0001", "0.0"])
frame.set_state_attribute('time_group', visible=True, **group_style)
frame.set_state_attribute('t_end',
visible=True,
description="Final time [yrs]: ",
value="1.0e10",
**text_box_style)
frame.set_state_attribute('dt',
visible=True,
description="Time step [yrs]: ",
value="1.0e7",
**text_box_style)
frame.set_state_attribute('imf_type_group', visible=True, **group_style)
frame.set_state_attribute(
'imf_type',
visible=True,
description="IMF type: ",
options=['salpeter', 'chabrier', 'kroupa', 'alphaimf'] +
list_custom_imf())
frame.set_state_attribute('imf_alpha',
description="Set alpha: ",
min=0,
max=5)
frame.set_state_attribute("imf_mass_group", visible=True, **group_style)
frame.set_state_attribute('imf_mass_min',
visible=True,
description="IMF lower limit [$M_{\odot}$]: ",
value="1.0",
**text_box_style)
frame.set_state_attribute('imf_mass_max',
visible=True,
description="IMF upper limit [$M_{\odot}$]: ",
value="30.0",
**text_box_style)
frame.set_state_attribute('sn1a_group', visible=True, **group_style)
frame.set_state_attribute('use_sn1a',
visible=True,
description="Include SNe Ia: ",
value=True)
frame.set_state_attribute("yield_table_group", visible=True, **group_style)
frame.set_state_attribute("yield_table_selection",
visible=True,
description="CCSN remnant prescription:",
options=["Analytic perscription", "Ye=0.4982"],
value="Ye=0.4982")
frame.set_state_attribute('yield_table_list',
visible=True,
options=yield_list["Ye=0.4982"],
selected_label="Fallback at Ye")
frame.set_state_links("sn1a_link", [("use_sn1a", "value"),
("sn1a_rates", "visible")],
directional=True)
frame.set_state_attribute(
'sn1a_rates',
description="SNe Ia rates: ",
options=['Power law', 'Exponential', 'Gaussian', 'Maoz12'])
frame.set_state_attribute("run_sim_remove_run_group",
visible=True,
**group_style)
frame.set_state_attribute('run_sim',
visible=True,
description="Run simulation",
**button_style)
frame.set_state_attribute("remove_run",
visible=True,
description="Remove selected",
**button_style)
frame.set_state_attribute("run_name",
visible=True,
description="Run name: ",
placeholder="Enter name",
value="",
**text_box_style)
frame.set_state_attribute("sim_responce",
value="<p>Simulation data loaded.</p>",
**group_style)
frame.set_state_attribute("sim_responce", states_sim_plot, visible=True)
frame.set_state_attribute('plot_type',
states_sim_plot,
visible=True,
description="Plot type: ",
options=[
"Total mass", "Species mass",
"Species spectroscopic",
"Mass range contributions"
])
def mass_gas_handler(name, value):
frame.set_attributes("mass_gas", value=float_text(value))
def t_end_handler(name, value):
frame.set_attributes("t_end", value=float_text(value))
def dt_handler(name, value):
frame.set_attributes("dt", value=float_text(value))
def imf_mass_min_handler(name, value):
frame.set_attributes("imf_mass_min", value=float_text(value))
def imf_mass_max_handler(name, value):
frame.set_attributes("imf_mass_max", value=float_text(value))
def sel_imf_type(attribute, value):
if value == "alphaimf":
frame.set_state_attribute("imf_alpha", visible=True)
frame.set_attributes("imf_alpha", visible=True, value=2.35)
else:
frame.set_state_attribute("imf_alpha", visible=False)
frame.set_attributes("imf_alpha", visible=False)
def yield_table_selection_handler(name, value):
frame.set_attributes("yield_table_list", options=yield_list[value])
if value == "Analytic perscription":
frame.set_attributes("yield_table_list", selected_label="Delay")
elif value == "Ye=0.4982":
frame.set_attributes("yield_table_list",
selected_label="Fallback at Ye")
def run_simulation(widget):
frame.set_attributes("sim_responce", visible=False)
clear_output()
pyplot.close("all")
sn1a_map = {
"Power law": "power_law",
"Gaussian": "gauss",
"Exponential": "exp",
"Maoz12": "maoz"
}
mgal = float(frame.get_attribute("mass_gas", "value"))
iniZ = float(frame.get_attribute("init_Z", "value"))
imf_type = frame.get_attribute("imf_type", "value")
alphaimf = frame.get_attribute("imf_alpha", "value")
mass_min = float(frame.get_attribute("imf_mass_min", "value"))
mass_max = float(frame.get_attribute("imf_mass_max", "value"))
imf_bdys = [mass_min, mass_max]
sn1a_on = frame.get_attribute("use_sn1a", "value")
sn1a_rate = sn1a_map[frame.get_attribute("sn1a_rates", "value")]
dt = float(frame.get_attribute("dt", "value"))
tend = float(frame.get_attribute("t_end", "value"))
yield_table = frame.get_attribute("yield_table_list", "value")
if not (imf_type in ['salpeter', 'chabrier', 'kroupa', 'alphaimf']):
destination = os.environ["SYGMADIR"] + "/imf_input.py"
shutil.copy(custom_imf_dir + imf_type + ".py", destination)
imf_type = "input"
run_count = frame.get_state_data("run_count")
name = frame.get_attribute("run_name", "value")
if name == "":
name = "Run - " + "%03d" % (run_count + 1, )
if iniZ == 0.0:
data = s.sygma(mgal=mgal,
iniZ=iniZ,
imf_type=imf_type,
alphaimf=alphaimf,
imf_bdys=[10.1, 100.0],
imf_bdys_pop3=imf_bdys,
sn1a_on=sn1a_on,
sn1a_rate=sn1a_rate,
dt=dt,
tend=tend,
table=yield_table)
else:
data = s.sygma(mgal=mgal,
iniZ=iniZ,
imf_type=imf_type,
alphaimf=alphaimf,
imf_bdys=imf_bdys,
sn1a_on=sn1a_on,
sn1a_rate=sn1a_rate,
dt=dt,
tend=tend,
table=yield_table)
frame.set_state("run_sim")
##force reset plottype
frame.set_attributes("plot_type",
selected_label="Species mass",
value="Species mass")
frame.set_attributes("plot_type",
selected_label="Total mass",
value="Total mass")
add_run(data, name, iniZ)
frame.update()
def remove_simulation(widget):
remove_runs()
frame.update()
def sel_tab(name, value):
open_tab = tablist[value]
if open_tab == "custom_imf_page":
frame.set_state_data("old_state", frame.get_state())
frame.set_state("custom_imf")
if frame.get_attribute("name_imf", "value") == "":
frame.set_attributes("text_imf", value=default_custom_imf_text)
else:
if frame.get_state() in states_cimf:
old_state = frame.get_state_data("old_state")
if old_state != None:
frame.set_state(old_state)
else:
frame.set_state("default")
frame.set_state_data("old_state", None)
frame.set_state_callbacks("mass_gas", mass_gas_handler)
frame.set_state_callbacks("t_end", t_end_handler)
frame.set_state_callbacks("dt", dt_handler)
frame.set_state_callbacks("imf_mass_min", imf_mass_min_handler)
frame.set_state_callbacks("imf_mass_max", imf_mass_max_handler)
frame.set_state_callbacks("imf_type", sel_imf_type)
frame.set_state_callbacks("yield_table_selection",
yield_table_selection_handler)
frame.set_state_callbacks("run_sim",
run_simulation,
attribute=None,
type="on_click")
frame.set_state_callbacks("remove_run",
remove_simulation,
attribute=None,
type="on_click")
frame.set_state_callbacks("widget", sel_tab, "selected_index")
frame.set_object("window", widgets.Box())
frame.set_object("title", widgets.HTML())
frame.set_object("widget_runs_group", widgets.HBox())
frame.set_object("widget", widgets.Tab())
frame.set_object("runs", widgets.VBox())
frame.set_object("runs_title", widgets.HTML())
frame.set_object("sim_page", widgets.VBox())
frame.set_object("mass_Z_group", widgets.HBox())
frame.set_object("mass_gas", widgets.Text())
frame.set_object("init_Z", widgets.Dropdown())
frame.set_object("time_group", widgets.HBox())
frame.set_object("t_end", widgets.Text())
frame.set_object("dt", widgets.Text())
frame.set_object("imf_type_group", widgets.HBox())
frame.set_object("imf_type", widgets.Dropdown())
frame.set_object("imf_alpha", widgets.FloatSlider())
frame.set_object("imf_mass_group", widgets.HBox())
frame.set_object("imf_mass_min", widgets.Text())
frame.set_object("imf_mass_max", widgets.Text())
frame.set_object("sn1a_group", widgets.HBox())
frame.set_object("use_sn1a", widgets.Checkbox())
frame.set_object("sn1a_rates", widgets.Dropdown())
frame.set_object("yield_table_group", widgets.HBox())
frame.set_object("yield_table_selection", widgets.ToggleButtons())
frame.set_object("yield_table_list", widgets.Dropdown())
frame.set_object("run_sim_remove_run_group", widgets.HBox())
frame.set_object("run_sim", widgets.Button())
frame.set_object("remove_run", widgets.Button())
frame.set_object("run_name", widgets.Text())
frame.set_object("sim_responce", widgets.HTML())
frame.set_object("plot_type", widgets.Dropdown())
frame.set_state_attribute("plot_page", visible=True)
frame.set_state_attribute("warning_msg",
visible=True,
value="<h3>Error: No simulation data!</h3>",
**group_style)
frame.set_state_attribute("warning_msg", states_plot, visible=False)
frame.set_state_attribute("plot_name", **group_style)
frame.set_state_attribute("plot_name",
"plot_totmasses",
visible=True,
value="<h2>Plot: Total mass evolution</h2>")
frame.set_state_attribute("plot_name",
"plot_mass",
visible=True,
value="<h2>Plot: Species mass evolution</h2>")
frame.set_state_attribute(
"plot_name",
"plot_spectro",
visible=True,
value="<h2>Plot: Spectroscopic Mass evolution</h2>")
frame.set_state_attribute(
"plot_name",
"plot_mass_range",
visible=True,
value=
"<h2>Plot: Mass range contributions</h2><p>Only ejecta from AGB and massive stars are considered.</p>"
)
frame.set_state_attribute("source_over_plotting_group",
states_plot,
visible=True,
**group_style)
frame.set_state_attribute("source",
["plot_totmasses", "plot_mass", "plot_spectro"],
visible=True,
description="Yield source: ",
options=["All", "AGB", "SNe Ia", "Massive"],
selected_label="All")
frame.set_state_attribute("over_plotting",
visible=True,
description="Over plotting",
value=False,
**button_style)
frame.set_state_attribute("clear_plot",
description="Clear plot",
**button_style)
frame.set_state_links("clear_plot_link", [("over_plotting", "value"),
("clear_plot", "visible")],
directional=True)
frame.set_state_attribute("species_group",
["plot_mass", "plot_mass_range"],
visible=True,
**group_style)
frame.set_state_attribute("iso_or_elem",
visible=True,
description="species type: ",
options=["Elements", "Isotopes"],
selected_label="Elements")
frame.set_state_attribute("species",
visible=True,
description="Element: ",
options=elements_all,
**text_box_style)
frame.set_state_attribute("elem_numer",
"plot_spectro",
visible=True,
description="Y-axis [X/Y], choose X: ",
options=elements_all,
**text_box_style)
frame.set_state_attribute("elem_denom",
"plot_spectro",
visible=True,
description="Y-axis [X/Y], choose Y: ",
options=elements_all,
**text_box_style)
frame.set_state_attribute("plot",
states_plot,
visible=True,
description="Generate Plot",
**button_style)
def clear_plot_handler(widget):
clear_output()
pyplot.close("all")
frame.set_state_data("over_plotting_data", [])
def sel_plot_type(attribute, value):
if value == "Total mass":
frame.set_state("plot_totmasses")
elif value == "Species mass":
frame.set_state("plot_mass")
elif value == "Species spectroscopic":
frame.set_state("plot_spectro")
elif value == "Mass range contributions":
frame.set_state("plot_mass_range")
# iniZ = float(frame.get_attribute("init_Z", "value"))
# if iniZ==0.0:
# frame.set_attributes("source", options=["All", "AGB", "Massive"])
# else:
frame.set_attributes("source",
options=["All", "AGB", "SNe Ia", "Massive"])
frame.set_state_data("over_plotting_data", [])
def sel_source(attribute, value):
if value == "SNe Ia":
frame.set_state_data("elements", elements_sn1a)
frame.set_state_data("isotopes", isotopes_sn1a)
else:
frame.set_state_data("elements", elements_all)
frame.set_state_data("isotopes", isotopes_all)
frame.set_attributes("elem_numer", options=[])
frame.set_attributes("elem_denom", options=[])
frame.set_attributes("species", options=[])
elements = frame.get_state_data("elements")
isotopes = frame.get_state_data("isotopes")
frame.set_attributes("elem_numer", options=elements)
frame.set_attributes("elem_denom", options=elements)
if frame.get_attribute("iso_or_elem", "value") == "Isotopes":
frame.set_attributes("species",
description="Isotope: ",
options=isotopes)
elif frame.get_attribute("iso_or_elem", "value") == "Elements":
frame.set_attributes("species",
description="Element: ",
options=elements)
def sel_iso_or_elem(attribute, value):
elements = frame.get_state_data("elements")
isotopes = frame.get_state_data("isotopes")
if value == "Isotopes":
frame.set_attributes("species",
description="Isotope: ",
options=isotopes)
frame.set_attributes("species_mult",
description="Isotope: ",
options=isotopes_sel_mult)
elif value == "Elements":
frame.set_attributes("species",
description="Element: ",
options=elements)
frame.set_attributes("species_mult",
description="Element: ",
options=elements_sel_mult)
def run(widget):
styles = frame.get_state_data("styles")
styles.reset_line_count()
clear_output()
pyplot.close("all")
over_plotting = frame.get_attribute("over_plotting", "value")
source_map = {
"All": "all",
"AGB": "agb",
"SNe Ia": "sn1a",
"Massive": "massive"
}
label_map = {
"All": "",
"AGB": ", AGB",
"SNe Ia": ", SNIa",
"Massive": ", Massive"
}
tot_mass_labels = {
"all": "All",
"agb": "AGB",
"sn1a": "SNIa",
"massive": "Massive"
}
state = frame.get_state()
runs = frame.get_state_data("runs")
source = source_map[frame.get_attribute("source", "value")]
label_source = label_map[frame.get_attribute("source", "value")]
species = frame.get_attribute("species", "value")
no_runs = True
if state == "plot_totmasses":
plot_data = frame.get_state_data("over_plotting_data")
if not over_plotting:
plot_data = []
over_plot = [("source", source)]
if not over_plot in plot_data:
plot_data.append(over_plot)
frame.set_state_data("over_plotting_data", plot_data)
for data, name, Z, widget_name in runs:
if frame.get_attribute(widget_name, "value"):
no_runs = False
for item in plot_data:
kwargs = dict(item)
label = name + ": " + tot_mass_labels[kwargs["source"]]
kwargs.update({"label": label})
kwargs.update(styles.get_style())
data.plot_totmasses(**kwargs)
elif state == "plot_mass":
plot_data = frame.get_state_data("over_plotting_data")
if not over_plotting:
plot_data = []
over_plot = [("specie", species), ("source", source)]
if not over_plot in plot_data:
plot_data.append(over_plot)
frame.set_state_data("over_plotting_data", plot_data)
for data, name, Z, widget_name in runs:
if frame.get_attribute(widget_name, "value"):
no_runs = False
for item in plot_data:
kwargs = dict(item)
label = name + ": " + kwargs["specie"]
if not kwargs["source"] == "all":
label = label + ", " + tot_mass_labels[
kwargs["source"]]
kwargs.update({"label": label})
kwargs.update(styles.get_style())
data.plot_mass(**kwargs)
elif state == "plot_spectro":
X = frame.get_attribute("elem_numer", "value")
Y = frame.get_attribute("elem_denom", "value")
yaxis = "[" + X + "/" + Y + "]"
plot_data = frame.get_state_data("over_plotting_data")
if not over_plotting:
plot_data = []
over_plot = [("yaxis", yaxis), ("source", source)]
if not over_plot in plot_data:
plot_data.append(over_plot)
frame.set_state_data("over_plotting_data", plot_data)
for data, name, Z, widget_name in runs:
if frame.get_attribute(widget_name, "value"):
no_runs = False
for item in plot_data:
kwargs = dict(item)
label = name + ": " + kwargs[
"yaxis"] + ", " + tot_mass_labels[kwargs["source"]]
kwargs.update({"label": label})
kwargs.update(styles.get_style())
data.plot_spectro(**kwargs)
elif state == "plot_mass_range":
plot_data = frame.get_state_data("over_plotting_data")
if not over_plotting:
plot_data = []
over_plot = [("specie", species)]
if not over_plot in plot_data:
plot_data.append(over_plot)
frame.set_state_data("over_plotting_data", plot_data)
for data, name, Z, widget_name in runs:
if frame.get_attribute(widget_name, "value"):
no_runs = False
for item in plot_data:
kwargs = dict(item)
label = name + ": " + kwargs["specie"]
kwargs.update({"label": label})
kwargs.update(styles.get_style())
data.plot_mass_range_contributions(**kwargs)
if no_runs:
print "No runs selected."
frame.set_state_callbacks("clear_plot",
clear_plot_handler,
attribute=None,
type="on_click")
frame.set_state_callbacks("plot_type", sel_plot_type)
frame.set_state_callbacks("source",
sel_source,
state=["plot_spectro", "plot_mass"])
frame.set_state_callbacks("iso_or_elem", sel_iso_or_elem)
frame.set_state_callbacks("plot", run, attribute=None, type="on_click")
frame.set_object("plot_page", widgets.VBox())
frame.set_object("warning_msg", widgets.HTML())
frame.set_object("plot_name", widgets.HTML())
frame.set_object("source_over_plotting_group", widgets.HBox())
frame.set_object("source", widgets.Dropdown())
frame.set_object("over_plotting", widgets.ToggleButton())
frame.set_object("clear_plot", widgets.Button())
frame.set_object("species_group", widgets.VBox())
frame.set_object("iso_or_elem", widgets.RadioButtons())
frame.set_object("species", widgets.Select())
frame.set_object("elem_numer", widgets.Select())
frame.set_object("elem_denom", widgets.Select())
frame.set_object("plot", widgets.Button())
frame.set_state_attribute("custom_imf_page", visible=True)
frame.set_state_attribute("load_save_imf_group",
visible=True,
**group_style)
frame.set_state_attribute("load_imf",
"custom_imf",
visible=True,
description="Load custom IMF",
**button_style)
frame.set_state_attribute("list_imfs",
"load_custom_imf",
visible=True,
description="Select IMF")
frame.set_state_attribute("name_imf",
"custom_imf",
visible=True,
description="IMF name",
**text_box_style)
frame.set_state_attribute("save_imf",
"custom_imf",
visible=True,
description="Save IMF",
**button_style)
frame.set_state_attribute("delete_imf",
"custom_imf",
visible=True,
description="Delete IMF",
**button_style)
frame.set_state_attribute("text_imf", visible=True)
frame.set_state_attribute("test_imf",
visible=True,
description="Test selected IMF file",
**button_style)
def load_imf_handler(widget):
frame.set_state("load_custom_imf")
options = ["", "Preset: default"] + list_custom_imf()
frame.set_attributes("list_imfs",
options=options,
value="",
selected_label="")
def sel_custom_imf(name, value):
if value != "":
frame.set_state("custom_imf")
if value == "Preset: default":
frame.set_attributes("name_imf", value="")
frame.set_attributes("text_imf", value=default_custom_imf_text)
else:
text = ""
with open(custom_imf_dir + value + ".py", "r") as fin:
text = fin.read()
frame.set_attributes("name_imf", value=value)
frame.set_attributes("text_imf", value=text)
def save_imf_handler(widget):
clear_output()
pyplot.close("all")
imf_name = frame.get_attribute("name_imf", "value")
if imf_name == "":
print("Error: not IMF name given")
else:
if not os.path.isdir(custom_imf_dir):
os.mkdir(custom_imf_dir)
with open(custom_imf_dir + imf_name + ".py", "w") as fout:
fout.write(frame.get_attribute("text_imf", "value"))
print("Custom IMF saved to " + imf_name)
frame.set_state_attribute(
'imf_type',
options=['salpeter', 'chabrier', 'kroupa', 'alphaimf'] +
list_custom_imf())
def delete_imf_handler(widget):
clear_output()
pyplot.close("all")
imf_name = frame.get_attribute("name_imf", "value")
if imf_name == "":
print("Error: not IMF name given")
else:
if os.path.isdir(custom_imf_dir):
if os.path.isfile(custom_imf_dir + imf_name + ".py"):
os.remove(custom_imf_dir + imf_name + ".py")
frame.set_attributes("name_imf", value="")
frame.set_attributes("text_imf",
value=default_custom_imf_text)
print("Custom IMF " + imf_name + " deleted.")
else:
print("Custom IMF, " + imf_name + ", not found!")
frame.set_state_attribute(
'imf_type',
options=['salpeter', 'chabrier', 'kroupa', 'alphaimf'] +
list_custom_imf())
def test_imf_handler(widget):
clear_output()
pyplot.close("all")
imf_name = frame.get_attribute("name_imf", "value")
if imf_name == "":
print("No IMF name given!")
return
try:
ci = load_source("custom_imf", custom_imf_dir + imf_name + ".py")
except IOError:
print("Failed to load " + imf_name + ", no IMF file found.")
return
mass_min = 0.0
mass_max = 30.0
xaxis = numpy.linspace(mass_min, mass_max, 1000)[1:]
yaxis = [0 for x in xaxis]
for i, x in enumerate(xaxis):
yaxis[i] = ci.custom_imf(x)
pyplot.plot(xaxis, numpy.log10(yaxis))
pyplot.title("IMF file test: " + imf_name)
pyplot.xlabel("mass [$M_{\odot}$]")
pyplot.ylabel("IMF")
pyplot.show()
frame.set_state_callbacks("load_imf",
load_imf_handler,
attribute=None,
type="on_click")
frame.set_state_callbacks("list_imfs", sel_custom_imf)
frame.set_state_callbacks("save_imf",
save_imf_handler,
attribute=None,
type="on_click")
frame.set_state_callbacks("delete_imf",
delete_imf_handler,
attribute=None,
type="on_click")
frame.set_state_callbacks("test_imf",
test_imf_handler,
attribute=None,
type="on_click")
frame.set_object("custom_imf_page", widgets.VBox())
frame.set_object("load_save_imf_group", widgets.HBox())
frame.set_object("load_imf", widgets.Button())
frame.set_object("list_imfs", widgets.Dropdown())
frame.set_object("name_imf", widgets.Text())
frame.set_object("save_imf", widgets.Button())
frame.set_object("delete_imf", widgets.Button())
frame.set_object("text_imf", widgets.Textarea())
frame.set_object("test_imf", widgets.Button())
frame.set_state_attribute("get_table_page", visible=True)
frame.set_state_attribute("warning_msg",
visible=True,
value="<h3>Error: No simulation data!</h3>",
**group_style)
frame.set_state_attribute("warning_msg", states_plot, visible=False)
frame.set_state_attribute("species_mult_group",
states_sim_plot,
visible=True,
**group_style)
frame.set_state_attribute("iso_or_elem",
visible=True,
description="species type: ",
options=["Elements", "Isotopes"],
selected_label="Elements")
frame.set_state_attribute("species_mult",
visible=True,
description="Element: ",
options=elements_sel_mult,
**text_box_style)
frame.set_state_attribute("get_table",
states_sim_plot,
visible=True,
description="Get table links",
**button_style)
frame.set_state_attribute("table_links",
states_sim_plot,
visible=True,
value="",
**group_style)
def species_mult_handler(name, value):
if "All" in value:
iso_or_elem = frame.get_attribute("iso_or_elem", "value")
if iso_or_elem == "Elements":
value = tuple(elements_all)
elif iso_or_elem == "Isotopes":
value = tuple(isotopes_all)
frame.set_attributes("species_mult",
value=value,
selected_labels=value)
frame.set_attributes("table_links", value="")
def get_table_handler(widget):
iso_or_elem = frame.get_attribute("iso_or_elem", "value")
species = list(frame.get_attribute("species_mult", "value"))
runs = frame.get_state_data("runs")
title = "<h3>Data table links:</h3>"
html = title
if not os.path.isdir("./evol_tables"):
os.mkdir("./evol_tables")
for data, name, Z, widget_name in runs:
if frame.get_attribute(widget_name, "value"):
file = "evol_tables/" + widget_name.replace("#", "") + "file"
if iso_or_elem == "Elements":
data.write_evol_table(species, [], file, "./")
elif iso_or_elem == "Isotopes":
data.write_evol_table([], species, file, "./")
html = html + "<p><a href=\"" + file + "\" target=\"_blank\" download>" + name + "</a></p>\n"
if html == title:
html = ""
print("No runs selected.")
frame.set_attributes("table_links", value=html)
clear_output()
pyplot.close("all")
frame.set_state_callbacks("species_mult", species_mult_handler)
frame.set_state_callbacks("get_table",
get_table_handler,
attribute=None,
type="on_click")
frame.set_object("species_mult_group", widgets.VBox())
frame.set_object("species_mult", widgets.SelectMultiple())
frame.set_object("get_table_page", widgets.VBox())
frame.set_object("get_table", widgets.Button())
frame.set_object("table_links", widgets.HTML())
##start widget##
frame.display_object("window")
def start_OMEGA():
tablist = ["sculptor", "carina", "fornax"]
yield_table = 'yield_tables/isotope_yield_table_MESA_only_ye.txt'
mgal_factor = {"sculptor":1.51e9, "carina":3.4e6, "fornax":7.08e8}
elements_sculpt = ['Mg', 'Si', 'Ca', 'Ti']
elements_carina = ['Na','Mg', 'Si', 'Sc', 'Ca', 'Ti', 'V', 'Cr', 'Mn', 'Ni', 'Zn']
elements_fornax = ['Mg', 'Si', 'Ca', 'Ti']
line_styles=['-', '--', '-.', ':']
line_colors=['b', 'g', 'r', 'c', 'm', 'y', 'k']
styles = auto_styles()
styles.set_line_styles(line_styles)
styles.set_line_colors(line_colors)
styles.set_line_markers([])
color_convert = colors.ColorConverter()
frame = framework.framework()
frame.set_default_display_style(padding="0.25em",background_color="white", border_color="LightGrey", border_radius="0.5em")
frame.set_default_io_style(padding="0.25em", margin="0.25em", border_color="LightGrey", border_radius="0.5em")
group_style = {"border_style":"none", "border_radius":"0em"}
text_box_style = {"width":"10em"}
button_style = {"font_size":"1.25em", "font_weight":"bold"}
first_tab_style = {"border_radius":"0em 0.5em 0.5em 0.5em"}
states = ["sculptor", "carina", "fornax"]
frame.add_state(states)
frame.set_state_data("runs",[],"sculptor")
frame.set_state_data("runs",[],"carina")
frame.set_state_data("runs",[],"fornax")
frame.set_state_data("styles", styles)
frame.set_state_data("run_count", 0)
def add_run(state, data, name):
run_count = frame.get_state_data("run_count")
state_data = frame.get_state_data("runs",state)
styles = frame.get_state_data("styles")
style = styles.get_style()
line_color = style["color"]
line_style = style["shape"]
widget_name = "runs_widget_#"+str(run_count)
frame.add_io_object(widget_name)
frame.set_state_attribute(widget_name, state, visible=True, description=name)
frame.set_object(widget_name, widgets.Checkbox())
state_data.append((data, name, line_style, line_color, widget_name))
frame.set_state_children("runs", [widget_name], state=state)
frame.set_state_data("runs", state_data, state)
def remove_runs(state):
state_data = frame.get_state_data("runs",state)
children = ["runs_title"]
tmp_data=[]
for i in xrange(len(state_data)):
widget_name = state_data[i][4]
if frame.get_attribute(widget_name, "value"):
frame.remove_object(widget_name)
else:
children.append(widget_name)
tmp_data.append(state_data[i])
state_data=tmp_data
frame.set_state_children("runs", children, state=state, append=False)
frame.set_state_data("runs", state_data, state)
frame.add_display_object("window")
frame.add_io_object("title")
frame.add_display_object("widget")
frame.add_display_object("simulation")
frame.add_display_object("sculptor")
frame.add_display_object("carina")
frame.add_display_object("fornax")
frame.add_display_object("baryon_name_group")
frame.add_io_object("f_baryon")
frame.add_io_object("run_name")
frame.add_io_object("loading_mass")
frame.add_io_object("sn1a_pmil")
frame.add_display_object("run_add_rm_group")
frame.add_io_object("run_sim")
frame.add_io_object("rm_sim")
frame.add_display_object("plotting_runs_group")
frame.add_display_object("plotting")
frame.add_io_object("plotting_title")
frame.add_display_object("runs")
frame.add_io_object("runs_title")
frame.add_io_object("select_elem")
frame.add_io_object("plot")
frame.add_io_object("warning_msg")
frame.set_state_children("window", ["title", "widget"])
frame.set_state_children("widget", ["simulation", "plotting_runs_group"])
frame.set_state_children("simulation", tablist, titles=["Sculptor Galaxy", "Carina Galaxy", "Fornax Galaxy"])
frame.set_state_children("sculptor", ["baryon_name_group", "loading_mass", "sn1a_pmil", "run_add_rm_group"])
frame.set_state_children("carina", ["baryon_name_group", "loading_mass", "sn1a_pmil", "run_add_rm_group"])
frame.set_state_children("fornax", ["baryon_name_group", "loading_mass", "sn1a_pmil", "run_add_rm_group"])
frame.set_state_children("baryon_name_group", ["f_baryon", "run_name"])
frame.set_state_children("run_add_rm_group", ["run_sim", "rm_sim"])
frame.set_state_children("plotting_runs_group", ["plotting", "runs"])
frame.set_state_children("plotting", ["plotting_title", "select_elem", "plot", "warning_msg"])
frame.set_state_children("runs", ["runs_title"], state=states)
frame.set_state_attribute('window', visible=True, **group_style)
frame.set_state_attribute('title', visible=True, value="<center><h1>OMEGA</h1></center>")
frame.set_state_attribute('widget', visible=True, **group_style)
frame.set_state_attribute('simulation', visible=True, **group_style)
frame.set_state_attribute('sculptor', visible=True, **first_tab_style)
frame.set_state_attribute('carina', visible=True)
frame.set_state_attribute('fornax', visible=True)
frame.set_state_attribute("baryon_name_group", visible=True, **group_style)
frame.set_state_attribute("f_baryon", visible=True, description="Baryon fraction: ", min=0.00005, max=0.1, step=0.00005)
frame.set_state_attribute("f_baryon", "sculptor", value=0.001)
frame.set_state_attribute("f_baryon", "carina", value=0.05)
frame.set_state_attribute("f_baryon", "fornax", value=0.001)
frame.set_state_attribute("run_name", visible=True, description="Run name: ", placeholder="Enter name", **text_box_style)
frame.set_state_attribute("loading_mass", visible=True, description="Mass loading factor: ", **text_box_style)
frame.set_state_attribute("loading_mass", ["sculptor", "carina"], value="10.0")
frame.set_state_attribute("loading_mass", "fornax", value="4.0")
frame.set_state_attribute("sn1a_pmil", visible=True, description="SNe Ia per stellar mass formed: ", **text_box_style)
frame.set_state_attribute("sn1a_pmil", ["sculptor", "carina"], value="2.0e-3")
frame.set_state_attribute("sn1a_pmil", "fornax", value="4.0e-3")
frame.set_state_attribute("run_add_rm_group", visible=True, **group_style)
frame.set_state_attribute("run_sim", visible=True, description="Run simulation", **button_style)
frame.set_state_attribute("rm_sim", visible=True, description="Remove selected run", **button_style)
frame.set_state_attribute("plotting_runs_group", visible=True, **group_style)
frame.set_state_attribute("plotting", visible=True)
frame.set_state_attribute("plotting_title", visible=True, value="<h2>Plotting options</h2>", **group_style)
frame.set_state_attribute("runs", visible=True)
frame.set_state_attribute("runs_title", visible=True, value="<h2>Runs</h2>", **group_style)
frame.set_state_attribute("select_elem", visible=True, description="Select Element: ", **text_box_style)
frame.set_state_attribute("select_elem", "sculptor", options=elements_sculpt)
frame.set_state_attribute("select_elem", "carina", options=elements_carina)
frame.set_state_attribute("select_elem", "fornax", options=elements_fornax)
frame.set_state_attribute("plot", visible=True, description="Generate Plot", **button_style)
frame.set_state_attribute("warning_msg", visible=False, value="<h3>Error no runs selected!</h3>", **group_style)
def loading_mass_handler(name, value):
if (value.strip())[0] == "-":
value = "0.0"
frame.set_attributes("loading_mass", value=float_text(value))
def sn1a_pmil_handler(name, value):
frame.set_attributes("sn1a_pmil", value=float_text(value))
def simulation_run(widget):
run_count = frame.get_state_data("run_count")
run_count += 1
state = frame.get_state()
data = None
name = frame.get_attribute("run_name", "value")
if name == "":
name="Run: "+"%03d" % (run_count,)
f_baryon = frame.get_attribute("f_baryon", "value")
loading_mass = float(frame.get_attribute("loading_mass", "value"))
sn1a_pmil = float(frame.get_attribute("sn1a_pmil", "value"))
mgal = f_baryon * mgal_factor[state]
data = omega.omega(galaxy=state, in_out_control=True, mgal=mgal, mass_loading=loading_mass,
nb_1a_per_m=sn1a_pmil, table=yield_table, Z_trans=-1, in_out_ratio=2.0)
add_run(state, data, name)
frame.update()
frame.set_attributes("run_name", value="")
frame.set_state_data("run_count", run_count)
def remove_simulation(widget):
state = frame.get_state()
remove_runs(state)
frame.update()
def sel_tab(name, value):
clear_output()
pyplot.close("all")
open_tab = tablist[value]
frame.set_state(open_tab)
frame.set_attributes("run_name", value="")
frame.update()
def generate_plot(widget):
clear_output()
pyplot.close("all")
state = frame.get_state()
data = frame.get_state_data("runs", state)
plotted_data = False
comp_data = True
if len(data) != 0:
st = stellab.stellab()
element = frame.get_attribute("select_elem", "value")
yaxis = '['+element+'/Fe]'
st.plot_spectro(xaxis='[Fe/H]', yaxis=yaxis,norm='Grevesse_Sauval_1998',galaxy=state,show_err=True)
for i in xrange(len(data)):
instance, name, line_style, line_color, widget_name = data[i]
label = name+", "+yaxis
selected = frame.get_attribute(widget_name, "value")
if selected:
plotted_data=True
xy = instance.plot_spectro(xaxis='[Fe/H]', yaxis=yaxis, return_x_y=True)
pyplot.plot(xy[0], xy[1], color=color_convert.to_rgba("w", 0.8), linestyle="-", marker=" ", linewidth=4)
if comp_data:
comp_data=False
for i in xrange(len(data)):
instance, name, line_style, line_color, widget_name = data[i]
label = name+", "+yaxis
selected = frame.get_attribute(widget_name, "value")
if selected:
plotted_data=True
xy = instance.plot_spectro(xaxis='[Fe/H]', yaxis=yaxis, return_x_y=True)
pyplot.plot(xy[0], xy[1], color=line_color, linestyle=line_style, marker=" ", linewidth=2, label=label)
if comp_data:
comp_data=False
#pyplot.legend(loc='center left', bbox_to_anchor=(1.01, 0.5), markerscale=0.8, fontsize=12)
if plotted_data:
frame.set_attributes("warning_msg", visible=False)
if state=="sculptor":
pyplot.ylim(-1.0,1.6)
pyplot.xlim(-4.0, -0.5)
elif state=="carina":
pyplot.ylim(-1.0,1.6)
pyplot.xlim(-4.0, -0.5)
if state=="fornax":
pyplot.ylim(-1.0,1.4)
pyplot.xlim(-3.5, 0)
matplotlib.rcParams.update({'font.size': 14})
pyplot.subplots_adjust(right=0.6)
pyplot.subplots_adjust(bottom=0.15)
pyplot.legend(loc='center left', bbox_to_anchor=(1.01, 0.5), prop={'size':12})
pyplot.show()
else:
frame.set_attributes("warning_msg", visible=True, value="<h3>Error no runs selected!</h3>")
else:
frame.set_attributes("warning_msg", visible=True, value="<h3>Error no run data!</h3>")
frame.set_state_callbacks("loading_mass", loading_mass_handler)
frame.set_state_callbacks("sn1a_pmil", sn1a_pmil_handler)
frame.set_state_callbacks("run_sim", simulation_run, attribute=None, type="on_click")
frame.set_state_callbacks("rm_sim", remove_simulation, attribute=None, type="on_click")
frame.set_state_callbacks("simulation", sel_tab, "selected_index")
frame.set_state_callbacks("plot", generate_plot, attribute=None, type="on_click")
frame.set_object("window", widgets.Box())
frame.set_object("title", widgets.HTML())
frame.set_object("widget", widgets.VBox())
frame.set_object("simulation", widgets.Tab())
frame.set_object("sculptor", widgets.Box())
frame.set_object("carina", widgets.Box())
frame.set_object("fornax", widgets.Box())
frame.set_object("baryon_name_group", widgets.HBox())
frame.set_object("f_baryon", widgets.FloatSlider())
frame.set_object("run_name", widgets.Text())
frame.set_object("loading_mass", widgets.Text())
frame.set_object("sn1a_pmil", widgets.Text())
frame.set_object("run_add_rm_group", widgets.HBox())
frame.set_object("run_sim", widgets.Button())
frame.set_object("rm_sim", widgets.Button())
frame.set_object("plotting_runs_group", widgets.HBox())
frame.set_object("plotting", widgets.VBox())
frame.set_object("plotting_title", widgets.HTML())
frame.set_object("runs", widgets.VBox())
frame.set_object("runs_title", widgets.HTML())
frame.set_object("select_elem", widgets.Dropdown())
frame.set_object("plot", widgets.Button())
frame.set_object("warning_msg", widgets.HTML())
##start widget##
frame.display_object("window")
tab_index = frame.get_attribute("simulation", "selected_index")
sel_tab("selected_index", tab_index)
def start_test_with_alpha_elements():
yield_table_names = ["NuGrid raw", "NuGrid 25Mo Nomoto 2006", "NuGrid 30Mo Nomoto 2006", "NuGrid 40Mo Nomoto 2006"]
yield_tables = {"NuGrid raw":'yield_tables/isotope_yield_table.txt',
"NuGrid 25Mo Nomoto 2006":'yield_tables/isotope_yield_table_N06_25Mo_full_IMF.txt',
"NuGrid 30Mo Nomoto 2006":'yield_tables/isotope_yield_table_N06_30Mo_full_IMF.txt',
"NuGrid 40Mo Nomoto 2006":'yield_tables/isotope_yield_table_N06_40Mo_full_IMF.txt'}
elements = ['O', 'Mg', 'Si', 'S', 'Ca']
line_styles=['-', '--', '-.', ':']
line_colors=['b', 'g', 'r', 'c', 'm', 'y', 'k']
styles = auto_styles()
styles.set_line_styles(line_styles)
styles.set_line_colors(line_colors)
styles.set_line_markers([])
color_convert = colors.ColorConverter()
frame = framework.framework()
frame.set_default_display_style(padding="0.25em",background_color="white", border_color="LightGrey", border_radius="0.5em")
frame.set_default_io_style(padding="0.25em", margin="0.25em", border_color="LightGrey", border_radius="0.5em")
group_style = {"border_style":"none", "border_radius":"0em"}
text_box_style = {"width":"10em"}
button_style = {"font_size":"1.25em", "font_weight":"bold"}
first_tab_style = {"border_radius":"0em 0.5em 0.5em 0.5em"}
frame.set_state_data("runs",[])
frame.set_state_data("styles", styles)
frame.set_state_data("run_count", 0)
def add_run(data, name):
run_count = frame.get_state_data("run_count")
state_data = frame.get_state_data("runs")
styles = frame.get_state_data("styles")
style = styles.get_style()
line_color = style["color"]
line_style = style["shape"]
widget_name = "runs_widget_#"+str(run_count)
frame.add_io_object(widget_name)
frame.set_state_attribute(widget_name, visible=True, description=name)
frame.set_object(widget_name, widgets.Checkbox())
state_data.append((data, name, line_style, line_color, widget_name))
frame.set_state_children("runs", [widget_name])
frame.set_state_data("runs", state_data)
def remove_runs():
state_data = frame.get_state_data("runs")
children = ["runs_title"]
tmp_data=[]
for i in xrange(len(state_data)):
widget_name = state_data[i][4]
if frame.get_attribute(widget_name, "value"):
frame.remove_object(widget_name)
else:
children.append(widget_name)
tmp_data.append(state_data[i])
state_data=tmp_data
frame.set_state_children("runs", children, append=False)
frame.set_state_data("runs", state_data)
frame.add_display_object("window")
frame.add_io_object("title")
frame.add_display_object("widget")
frame.add_display_object("simulation")
frame.add_display_object("table_name_group")
frame.add_io_object("select_table")
frame.add_io_object("run_name")
frame.add_display_object("run_add_rm_group")
frame.add_io_object("run_sim")
frame.add_io_object("rm_sim")
frame.add_display_object("plotting_runs_group")
frame.add_display_object("plotting")
frame.add_io_object("plotting_title")
frame.add_display_object("runs")
frame.add_io_object("runs_title")
frame.add_io_object("select_elem")
frame.add_io_object("plot")
frame.add_io_object("warning_msg")
frame.set_state_children("window", ["title", "widget"])
frame.set_state_children("widget", ["simulation", "plotting_runs_group"])
frame.set_state_children("simulation", ["table_name_group", "run_add_rm_group"])
frame.set_state_children("table_name_group", ["select_table", "run_name"])
frame.set_state_children("run_add_rm_group", ["run_sim", "rm_sim"])
frame.set_state_children("plotting_runs_group", ["plotting", "runs"])
frame.set_state_children("plotting", ["plotting_title", "select_elem", "plot", "warning_msg"])
frame.set_state_children("runs", ["runs_title"])
frame.set_state_attribute('window', visible=True, **group_style)
frame.set_state_attribute('title', visible=True, value="<center><h1>Test with Alpha elements</h1><center>")
frame.set_state_attribute('widget', visible=True, **group_style)
frame.set_state_attribute('simulation', visible=True)
frame.set_state_attribute("table_name_group", visible=True, **group_style)
frame.set_state_attribute("select_table", visible=True, description="Yield table: ", options=yield_table_names)
frame.set_state_attribute("run_name", visible=True, description="Run name: ", placeholder="Enter name", **text_box_style)
frame.set_state_attribute("run_add_rm_group", visible=True, **group_style)
frame.set_state_attribute("run_sim", visible=True, description="Run simulation", **button_style)
frame.set_state_attribute("rm_sim", visible=True, description="Remove selected run", **button_style)
frame.set_state_attribute("plotting_runs_group", visible=True, **group_style)
frame.set_state_attribute("plotting", visible=True)
frame.set_state_attribute("plotting_title", visible=True, value="<h2>Plotting options</h2>", **group_style)
frame.set_state_attribute("runs", visible=True)
frame.set_state_attribute("runs_title", visible=True, value="<h2>Runs</h2>", **group_style)
frame.set_state_attribute("select_elem", visible=True, description="Select Element: ", **text_box_style)
frame.set_state_attribute("select_elem", options=elements)
frame.set_state_attribute("plot", visible=True, description="Generate Plot", **button_style)
frame.set_state_attribute("warning_msg", visible=False, value="<h3>Error no runs selected!</h3>", **group_style)
def loading_mass_handler(name, value):
if (value.strip())[0] == "-":
value = "0.0"
frame.set_attributes("loading_mass", value=float_text(value))
def sn1a_pmil_handler(name, value):
frame.set_attributes("sn1a_pmil", value=float_text(value))
def simulation_run(widget):
run_count = frame.get_state_data("run_count")
run_count += 1
data = None
name = frame.get_attribute("run_name", "value")
if name == "":
name="Run: "+"%03d" % (run_count,)
select_table = yield_tables[frame.get_attribute("select_table", "value")]
data = omega.omega(galaxy='milky_way', table=select_table)
add_run(data, name)
frame.update()
frame.set_attributes("run_name", value="")
frame.set_state_data("run_count", run_count)
def remove_simulation(widget):
remove_runs()
frame.update()
def generate_plot(widget):
clear_output()
pyplot.close("all")
data = frame.get_state_data("runs")
plotted_data = False
comp_data = True
if len(data) != 0:
element = frame.get_attribute("select_elem", "value")
for i in xrange(len(data)):
instance, name, line_style, line_color, widget_name = data[i]
yaxis = '['+element+'/Fe]'
label = name+", "+yaxis
selected = frame.get_attribute(widget_name, "value")
if selected:
plotted_data=True
instance.plot_spectro(xaxis="[Fe/H]", yaxis=yaxis, show_data=comp_data, color=color_convert.to_rgba("w", 0.8),
shape="-", marker=" ", linewidth=4, fsize=[10, 4.5], show_legend=False)
if comp_data:
comp_data=False
for i in xrange(len(data)):
instance, name, line_style, line_color, widget_name = data[i]
yaxis = '['+element+'/Fe]'
label = name+", "+yaxis
selected = frame.get_attribute(widget_name, "value")
if selected:
plotted_data=True
instance.plot_spectro(xaxis="[Fe/H]", yaxis=yaxis, label=label, show_data=comp_data, color=line_color,
shape=line_style, marker=" ", linewidth=2, fsize=[10, 4.5])
if comp_data:
comp_data=False
if plotted_data:
frame.set_attributes("warning_msg", visible=False)
pyplot.ylim(-0.5,1.4)
matplotlib.rcParams.update({'font.size': 14})
pyplot.subplots_adjust(right=0.6)
pyplot.subplots_adjust(bottom=0.15)
pyplot.legend(loc='center left', bbox_to_anchor=(1.01, 0.5), prop={'size':12})
pyplot.show()
else:
frame.set_attributes("warning_msg", visible=True, value="<h3>Error no runs selected!</h3>")
else:
frame.set_attributes("warning_msg", visible=True, value="<h3>Error no run data!</h3>")
frame.set_state_callbacks("run_sim", simulation_run, attribute=None, type="on_click")
frame.set_state_callbacks("rm_sim", remove_simulation, attribute=None, type="on_click")
frame.set_state_callbacks("plot", generate_plot, attribute=None, type="on_click")
frame.set_object("window", widgets.Box())
frame.set_object("title", widgets.HTML())
frame.set_object("widget", widgets.VBox())
frame.set_object("simulation", widgets.VBox())
frame.set_object("table_name_group", widgets.HBox())
frame.set_object("select_table", widgets.Dropdown())
frame.set_object("run_name", widgets.Text())
frame.set_object("run_add_rm_group", widgets.HBox())
frame.set_object("run_sim", widgets.Button())
frame.set_object("rm_sim", widgets.Button())
frame.set_object("plotting_runs_group", widgets.HBox())
frame.set_object("plotting", widgets.VBox())
frame.set_object("plotting_title", widgets.HTML())
frame.set_object("runs", widgets.VBox())
frame.set_object("runs_title", widgets.HTML())
frame.set_object("select_elem", widgets.Dropdown())
frame.set_object("plot", widgets.Button())
frame.set_object("warning_msg", widgets.HTML())
##start widget##
frame.display_object("window")
def start_SYGMA():
frame = framework.framework()
frame.set_default_display_style(padding="0.25em",background_color="white", border_color="LightGrey", border_radius="0.5em")
frame.set_default_io_style(padding="0.25em", margin="0.25em", border_color="LightGrey", border_radius="0.5em")
tablist = ["sim_page", "plot_page", "custom_imf_page", "get_table_page"]
yield_list = {"Analytic perscription":{"Delay":"yield_tables/isotope_yield_table_MESA_only_fryer12_delay.txt",
"Rapid":"yield_tables/isotope_yield_table_MESA_only_fryer12_rapid.txt",
"Exclude neutron-alpha rich freeze-out":"yield_tables/isotope_yield_table_MESA_only_fryer12_exclnalpha.txt"},
"Ye=0.4982":{"Fallback at Ye":"yield_tables/isotope_yield_table_MESA_only_ye.txt",
"Fallback motivated by GCE":"yield_tables/isotope_yield_table_MESA_only_ye_fallback.txt"}}
group_style = {"border_style":"none", "border_radius":"0em"}
text_box_style = {"width":"10em"}
button_style = {"font_size":"1.25em", "font_weight":"bold"}
first_tab_style = {"border_radius":"0em 0.5em 0.5em 0.5em"}
custom_imf_dir = os.environ["SYGMADIR"] + "/SYGMA_widget_imfs/"
default_custom_imf_text = "\n#File to define a custom IMF\n#Define your IMF in custom_imf\n#so that the return value represents\n#the chosen IMF value for the input mass\n\ndef custom_imf(mass):\n #Salpeter IMF\n return mass**-2.35\n"
states_plot = ["plot_totmasses", "plot_mass", "plot_spectro", "plot_mass_range"]
states_sim_plot = ["run_sim"] + states_plot
states_cimf = ["custom_imf", "load_custom_imf"]
states = states_sim_plot + states_cimf
frame.add_state(states)
isotopes_all=['H-1','H-2','He-3','He-4','Li-7','B-11','C-12','C-13','N-14','N-15','O-16','O-17','O-18','F-19','Ne-20','Ne-21','Ne-22','Na-23','Mg-24','Mg-25','Mg-26','Al-27','Si-28','Si-29','Si-30','P-31','S-32','S-33','S-34','S-36','Cl-35','Cl-37','Ar-36','Ar-38','Ar-40','K-39','K-40','K-41','Ca-40','Ca-42','Ca-43','Ca-44','Ca-46','Ca-48','Sc-45','Ti-46','Ti-47','Ti-48','Ti-49','Ti-50','V-50','V-51','Cr-50','Cr-52','Cr-53','Cr-54','Mn-55','Fe-54','Fe-56','Fe-57','Fe-58','Co-59','Ni-58','Ni-60','Ni-61','Ni-62','Ni-64']
elements_all=['H','He','Li','B','C','N','O','F','Ne','Na','Mg','Al','Si','P','S','Cl','Ar','K','Ca','Sc','Ti','V','Cr','Mn','Fe','Co','Ni']
isotopes_sn1a=['C-12','C-13','N-14','N-15','O-16','O-17','O-18','F-19','Ne-20','Ne-21','Ne-22','Na-23','Mg-24','Mg-25','Mg-26','Al-27','Si-28','Si-29','Si-30','P-31','S-32','S-33','S-34','S-36','Cl-35','Cl-37','Ar-36','Ar-38','Ar-40','K-39','K-40','K-41','Ca-40','Ca-42','Ca-43','Ca-44','Ca-46','Ca-48','Sc-45','Ti-46','Ti-47','Ti-48','Ti-49','Ti-50','V-50','V-51','Cr-50','Cr-52','Cr-53','Cr-54','Mn-55','Fe-54','Fe-56','Fe-57','Fe-58','Co-59','Ni-58','Ni-60','Ni-61','Ni-62','Ni-64']
elements_sn1a=['C','N','O','F','Ne','Na','Mg','Al','Si','P','S','Cl','Ar','K','Ca','Sc','Ti','V','Cr','Mn','Fe','Co','Ni']
isotopes_sel_mult = ["All"] + isotopes_all
elements_sel_mult = ["All"] + elements_all
line_styles=["-", "--", ":", "-."]
# line_colors=["k", "r", "g", "b", "c", "m", "y"]
line_colors=["k", "r", "b", "c", "m", "y"]#remove "g"
line_markers = ["o", "s", "x", "D", "v", "^", "<", ">", "p", "*", "+"]
styles = auto_styles()
styles.set_line_styles(line_styles)
styles.set_line_colors(line_colors)
styles.set_line_markers(line_markers)
frame.set_state_data("elements", elements_all)
frame.set_state_data("isotopes", isotopes_all)
frame.set_state_data("over_plotting_data", [])
frame.set_state_data("styles", styles)
frame.set_state_data("old_state", None)
frame.set_state_data("runs", [])
frame.set_state_data("run_count", 0)
def add_run(data, name, Z):
run_count = frame.get_state_data("run_count")
runs_data = frame.get_state_data("runs")
widget_name = "runs_widget_#"+str(run_count)
frame.add_io_object(widget_name)
frame.set_state_attribute(widget_name, visible=True, description=name)
frame.set_object(widget_name, widgets.Checkbox())
runs_data.append((data, name, Z, widget_name))
frame.set_state_children("runs", [widget_name])
frame.set_state_data("runs", runs_data)
run_count += 1
frame.set_state_data("run_count", run_count)
def remove_runs():
data = frame.get_state_data("runs")
children = ["runs_title"]
tmp_data = []
for i in xrange(len(data)):
widget_name = data[i][3]
if frame.get_attribute(widget_name, "value"):
frame.remove_object(widget_name)
else:
children.append(widget_name)
tmp_data.append(data[i])
data = tmp_data
frame.set_state_children("runs", children, append=False)
frame.set_state_data("runs", data)
def list_custom_imf():
if os.path.isdir(custom_imf_dir):
files_dirs = os.listdir(custom_imf_dir)
imfs = []
for file in files_dirs:
file_full = custom_imf_dir + file
if os.path.isfile(file_full):
file = file.rsplit(".", 1)
if file[1] == "py":
imfs.append(file[0])
return imfs
else:
return []
frame.add_display_object("window")
frame.add_io_object("title")
frame.add_display_object("widget_runs_group")
frame.add_display_object("widget")
frame.add_display_object("runs")
frame.add_io_object("runs_title")
###Sim page###
frame.add_display_object("sim_page")
frame.add_display_object("mass_Z_group")
frame.add_io_object("init_Z")
frame.add_io_object("mass_gas")
frame.add_display_object("time_group")
frame.add_io_object("t_end")
frame.add_io_object("dt")
frame.add_display_object("imf_type_group")
frame.add_io_object("imf_type")
frame.add_io_object("imf_alpha")
frame.add_display_object("imf_mass_group")
frame.add_io_object("imf_mass_min")
frame.add_io_object("imf_mass_max")
frame.add_display_object("sn1a_group")
frame.add_io_object("use_sn1a")
frame.add_io_object("sn1a_rates")
frame.add_display_object("yield_table_group")
frame.add_io_object("yield_table_selection")
frame.add_io_object("yield_table_list")
frame.add_display_object("run_sim_remove_run_group")
frame.add_io_object("run_sim")
frame.add_io_object("remove_run")
frame.add_io_object("run_name")
frame.add_io_object("plot_type")
frame.add_io_object("sim_responce")
frame.set_state_children("window", ["title", "widget_runs_group"])
frame.set_state_children("widget_runs_group", ["widget", "runs"])
frame.set_state_children("widget", ["sim_page"], titles=["Simulation"])
frame.set_state_children("sim_page", ["mass_Z_group", "time_group", "imf_type_group", "imf_mass_group", "sn1a_group", "yield_table_group", "run_sim_remove_run_group", "sim_responce"])
frame.set_state_children("mass_Z_group", ["mass_gas", "init_Z"])
frame.set_state_children("time_group", ["t_end", "dt"])
frame.set_state_children("imf_type_group", ["imf_type", "imf_alpha"])
frame.set_state_children("imf_mass_group", ["imf_mass_min", "imf_mass_max"])
frame.set_state_children("sn1a_group", ["use_sn1a", "sn1a_rates"])
frame.set_state_children("yield_table_group", ["yield_table_selection", "yield_table_list"])
frame.set_state_children("run_sim_remove_run_group", ["run_sim", "remove_run", "run_name"])
frame.set_state_children("runs", ["runs_title"])
###plotting page###
frame.add_display_object("plot_page")
frame.add_io_object("warning_msg")
frame.add_io_object("plot_name")
frame.add_display_object("source_over_plotting_group")
frame.add_io_object("source")
frame.add_io_object("over_plotting")
frame.add_io_object("clear_plot")
frame.add_display_object("species_group")
frame.add_io_object("iso_or_elem")
frame.add_io_object("species")
frame.add_io_object("elem_numer")
frame.add_io_object("elem_denom")
frame.add_io_object("plot")
frame.set_state_children("widget", ["plot_page"], titles=["Plotting"])
frame.set_state_children("plot_page", ["warning_msg", "plot_type", "plot_name", "source_over_plotting_group", "species_group", "elem_numer", "elem_denom", "plot"])
frame.set_state_children("source_over_plotting_group", ["source", "over_plotting", "clear_plot"])
frame.set_state_children("species_group", ["iso_or_elem", "species"])
###Custom IMF page###
frame.add_display_object("custom_imf_page")
frame.add_display_object("load_save_imf_group")
frame.add_io_object("load_imf")
frame.add_io_object("list_imfs")
frame.add_io_object("name_imf")
frame.add_io_object("save_imf")
frame.add_io_object("delete_imf")
frame.add_io_object("text_imf")
frame.add_io_object("test_imf")
frame.set_state_children("widget", ["custom_imf_page"], titles=["Custom IMF"])
frame.set_state_children("custom_imf_page", ["load_save_imf_group", "text_imf", "test_imf"])
frame.set_state_children("load_save_imf_group", ["load_imf", "list_imfs", "name_imf", "save_imf", "delete_imf"])
###plotting page###
frame.add_display_object("get_table_page")
frame.add_display_object("species_mult_group")
frame.add_io_object("species_mult")
frame.add_io_object("get_table")
frame.add_io_object("table_links")
frame.set_state_children("widget", ["get_table_page"], titles=["Download Tables"])
frame.set_state_children("get_table_page", ["warning_msg", "species_mult_group", "get_table", "table_links"])
frame.set_state_children("species_mult_group", ["iso_or_elem", "species_mult"])
frame.set_state_attribute('window', visible=True, **group_style)
frame.set_state_attribute('title', visible=True, value="<center><h1>SYGMA</h1></center>")
frame.set_state_attribute("widget_runs_group", visible=True, **group_style)
frame.set_state_attribute('widget', visible=True, **group_style)
frame.set_state_attribute("runs", visible=True, margin="3.15em 0em 0em 0em")
frame.set_state_attribute("runs", states_cimf, visible=False)
frame.set_state_attribute("runs_title", visible=True, value="<center><h2>Runs</h2></center>", **group_style)
frame.set_state_attribute('sim_page', visible=True, **first_tab_style)
frame.set_state_attribute("mass_Z_group", visible=True, **group_style)
frame.set_state_attribute("mass_gas", visible=True, description="Total stellar mass [$M_{\odot}$]:", value="1.0", **text_box_style)
frame.set_state_attribute('init_Z', visible=True, description="Initial metallicity: ", options=["0.02", "0.01", "0.006", "0.001", "0.0001", "0.0"])
frame.set_state_attribute('time_group', visible=True, **group_style)
frame.set_state_attribute('t_end', visible=True, description="Final time [yrs]: ", value="1.0e10", **text_box_style)
frame.set_state_attribute('dt', visible=True, description="Time step [yrs]: ", value="1.0e7", **text_box_style)
frame.set_state_attribute('imf_type_group', visible=True, **group_style)
frame.set_state_attribute('imf_type', visible=True, description="IMF type: ", options=['salpeter', 'chabrier', 'kroupa', 'alphaimf'] + list_custom_imf())
frame.set_state_attribute('imf_alpha', description="Set alpha: ", min=0, max=5)
frame.set_state_attribute("imf_mass_group", visible=True, **group_style)
frame.set_state_attribute('imf_mass_min', visible=True, description="IMF lower limit [$M_{\odot}$]: ", value="1.0", **text_box_style)
frame.set_state_attribute('imf_mass_max', visible=True, description="IMF upper limit [$M_{\odot}$]: ", value="30.0", **text_box_style)
frame.set_state_attribute('sn1a_group', visible=True, **group_style)
frame.set_state_attribute('use_sn1a', visible=True, description="Include SNe Ia: ", value=True)
frame.set_state_attribute("yield_table_group", visible=True, **group_style)
frame.set_state_attribute("yield_table_selection", visible=True, description="CCSN remnant prescription:", options=["Analytic perscription", "Ye=0.4982"], value="Ye=0.4982")
frame.set_state_attribute('yield_table_list', visible=True, options=yield_list["Ye=0.4982"], selected_label="Fallback at Ye")
frame.set_state_links("sn1a_link", [("use_sn1a", "value"), ("sn1a_rates", "visible")], directional=True)
frame.set_state_attribute('sn1a_rates', description="SNe Ia rates: ", options=['Power law', 'Exponential', 'Gaussian','Maoz12'])
frame.set_state_attribute("run_sim_remove_run_group", visible=True, **group_style)
frame.set_state_attribute('run_sim', visible=True, description="Run simulation", **button_style)
frame.set_state_attribute("remove_run", visible=True, description="Remove selected", **button_style)
frame.set_state_attribute("run_name", visible=True, description="Run name: ", placeholder="Enter name", value="", **text_box_style)
frame.set_state_attribute("sim_responce", value="<p>Simulation data loaded.</p>", **group_style)
frame.set_state_attribute("sim_responce", states_sim_plot, visible=True)
frame.set_state_attribute('plot_type', states_sim_plot, visible=True, description="Plot type: ", options=["Total mass", "Species mass", "Species spectroscopic", "Mass range contributions"])
def mass_gas_handler(name, value):
frame.set_attributes("mass_gas", value=float_text(value))
def t_end_handler(name, value):
frame.set_attributes("t_end", value=float_text(value))
def dt_handler(name, value):
frame.set_attributes("dt", value=float_text(value))
def imf_mass_min_handler(name, value):
frame.set_attributes("imf_mass_min", value=float_text(value))
def imf_mass_max_handler(name, value):
frame.set_attributes("imf_mass_max", value=float_text(value))
def sel_imf_type(attribute, value):
if value=="alphaimf":
frame.set_state_attribute("imf_alpha", visible=True)
frame.set_attributes("imf_alpha", visible=True, value=2.35)
else:
frame.set_state_attribute("imf_alpha", visible=False)
frame.set_attributes("imf_alpha", visible=False)
def yield_table_selection_handler(name, value):
frame.set_attributes("yield_table_list", options=yield_list[value])
if value == "Analytic perscription":
frame.set_attributes("yield_table_list", selected_label="Delay")
elif value == "Ye=0.4982":
frame.set_attributes("yield_table_list", selected_label="Fallback at Ye")
def run_simulation(widget):
frame.set_attributes("sim_responce", visible=False)
clear_output()
pyplot.close("all")
sn1a_map = {"Power law":"power_law", "Gaussian":"gauss","Exponential":"exp","Maoz12":"maoz"}
mgal = float(frame.get_attribute("mass_gas", "value"))
iniZ = float(frame.get_attribute("init_Z", "value"))
imf_type = frame.get_attribute("imf_type", "value")
alphaimf = frame.get_attribute("imf_alpha", "value")
mass_min = float(frame.get_attribute("imf_mass_min", "value"))
mass_max = float(frame.get_attribute("imf_mass_max", "value"))
imf_bdys = [mass_min, mass_max]
sn1a_on = frame.get_attribute("use_sn1a", "value")
sn1a_rate = sn1a_map[frame.get_attribute("sn1a_rates", "value")]
dt = float(frame.get_attribute("dt", "value"))
tend = float(frame.get_attribute("t_end", "value"))
yield_table = frame.get_attribute("yield_table_list", "value")
if not (imf_type in ['salpeter', 'chabrier', 'kroupa', 'alphaimf']):
destination = os.environ["SYGMADIR"] + "/imf_input.py"
shutil.copy(custom_imf_dir + imf_type + ".py", destination)
imf_type = "input"
run_count = frame.get_state_data("run_count")
name = frame.get_attribute("run_name", "value")
if name == "":
name = "Run - "+"%03d" % (run_count + 1, )
if iniZ==0.0:
data=s.sygma(mgal=mgal, iniZ=iniZ, imf_type=imf_type, alphaimf=alphaimf, imf_bdys=[10.1, 100.0], imf_bdys_pop3=imf_bdys, sn1a_on=sn1a_on,
sn1a_rate=sn1a_rate, dt=dt,tend=tend, table=yield_table)
else:
data=s.sygma(mgal=mgal, iniZ=iniZ, imf_type=imf_type, alphaimf=alphaimf, imf_bdys=imf_bdys, sn1a_on=sn1a_on,
sn1a_rate=sn1a_rate, dt=dt,tend=tend, table=yield_table)
frame.set_state("run_sim")
##force reset plottype
frame.set_attributes("plot_type", selected_label="Species mass", value="Species mass")
frame.set_attributes("plot_type", selected_label="Total mass", value="Total mass")
add_run(data, name, iniZ)
frame.update()
def remove_simulation(widget):
remove_runs()
frame.update()
def sel_tab(name, value):
open_tab = tablist[value]
if open_tab == "custom_imf_page":
frame.set_state_data("old_state", frame.get_state())
frame.set_state("custom_imf")
if frame.get_attribute("name_imf", "value") == "":
frame.set_attributes("text_imf", value=default_custom_imf_text)
else:
if frame.get_state() in states_cimf:
old_state = frame.get_state_data("old_state")
if old_state != None:
frame.set_state(old_state)
else:
frame.set_state("default")
frame.set_state_data("old_state", None)
frame.set_state_callbacks("mass_gas", mass_gas_handler)
frame.set_state_callbacks("t_end", t_end_handler)
frame.set_state_callbacks("dt", dt_handler)
frame.set_state_callbacks("imf_mass_min", imf_mass_min_handler)
frame.set_state_callbacks("imf_mass_max", imf_mass_max_handler)
frame.set_state_callbacks("imf_type", sel_imf_type)
frame.set_state_callbacks("yield_table_selection", yield_table_selection_handler)
frame.set_state_callbacks("run_sim", run_simulation, attribute=None, type="on_click")
frame.set_state_callbacks("remove_run", remove_simulation, attribute=None, type="on_click")
frame.set_state_callbacks("widget", sel_tab, "selected_index")
frame.set_object("window", widgets.Box())
frame.set_object("title", widgets.HTML())
frame.set_object("widget_runs_group", widgets.HBox())
frame.set_object("widget", widgets.Tab())
frame.set_object("runs", widgets.VBox())
frame.set_object("runs_title", widgets.HTML())
frame.set_object("sim_page", widgets.VBox())
frame.set_object("mass_Z_group", widgets.HBox())
frame.set_object("mass_gas", widgets.Text())
frame.set_object("init_Z", widgets.Dropdown())
frame.set_object("time_group", widgets.HBox())
frame.set_object("t_end", widgets.Text())
frame.set_object("dt", widgets.Text())
frame.set_object("imf_type_group", widgets.HBox())
frame.set_object("imf_type", widgets.Dropdown())
frame.set_object("imf_alpha", widgets.FloatSlider())
frame.set_object("imf_mass_group", widgets.HBox())
frame.set_object("imf_mass_min", widgets.Text())
frame.set_object("imf_mass_max", widgets.Text())
frame.set_object("sn1a_group", widgets.HBox())
frame.set_object("use_sn1a", widgets.Checkbox())
frame.set_object("sn1a_rates", widgets.Dropdown())
frame.set_object("yield_table_group", widgets.HBox())
frame.set_object("yield_table_selection", widgets.ToggleButtons())
frame.set_object("yield_table_list", widgets.Dropdown())
frame.set_object("run_sim_remove_run_group", widgets.HBox())
frame.set_object("run_sim", widgets.Button())
frame.set_object("remove_run", widgets.Button())
frame.set_object("run_name", widgets.Text())
frame.set_object("sim_responce", widgets.HTML())
frame.set_object("plot_type", widgets.Dropdown())
frame.set_state_attribute("plot_page", visible=True)
frame.set_state_attribute("warning_msg", visible=True, value="<h3>Error: No simulation data!</h3>", **group_style)
frame.set_state_attribute("warning_msg", states_plot, visible=False)
frame.set_state_attribute("plot_name", **group_style)
frame.set_state_attribute("plot_name", "plot_totmasses", visible=True, value="<h2>Plot: Total mass evolution</h2>")
frame.set_state_attribute("plot_name", "plot_mass", visible=True, value="<h2>Plot: Species mass evolution</h2>")
frame.set_state_attribute("plot_name", "plot_spectro", visible=True, value="<h2>Plot: Spectroscopic Mass evolution</h2>")
frame.set_state_attribute("plot_name", "plot_mass_range", visible=True, value="<h2>Plot: Mass range contributions</h2><p>Only ejecta from AGB and massive stars are considered.</p>")
frame.set_state_attribute("source_over_plotting_group", states_plot, visible=True, **group_style)
frame.set_state_attribute("source", ["plot_totmasses", "plot_mass", "plot_spectro"], visible=True, description="Yield source: ", options=["All", "AGB", "SNe Ia", "Massive"], selected_label="All")
frame.set_state_attribute("over_plotting", visible=True, description="Over plotting", value=False, **button_style)
frame.set_state_attribute("clear_plot", description="Clear plot", **button_style)
frame.set_state_links("clear_plot_link", [("over_plotting", "value"), ("clear_plot", "visible")], directional=True)
frame.set_state_attribute("species_group", ["plot_mass", "plot_mass_range"], visible=True, **group_style)
frame.set_state_attribute("iso_or_elem", visible=True, description="species type: ", options=["Elements", "Isotopes"], selected_label="Elements")
frame.set_state_attribute("species", visible=True, description="Element: ", options=elements_all, **text_box_style)
frame.set_state_attribute("elem_numer", "plot_spectro", visible=True, description="Y-axis [X/Y], choose X: ", options=elements_all, **text_box_style)
frame.set_state_attribute("elem_denom", "plot_spectro", visible=True, description="Y-axis [X/Y], choose Y: ", options=elements_all, **text_box_style)
frame.set_state_attribute("plot", states_plot, visible=True, description="Generate Plot", **button_style)
def clear_plot_handler(widget):
clear_output()
pyplot.close("all")
frame.set_state_data("over_plotting_data", [])
def sel_plot_type(attribute, value):
if value=="Total mass":
frame.set_state("plot_totmasses")
elif value=="Species mass":
frame.set_state("plot_mass")
elif value=="Species spectroscopic":
frame.set_state("plot_spectro")
elif value=="Mass range contributions":
frame.set_state("plot_mass_range")
# iniZ = float(frame.get_attribute("init_Z", "value"))
# if iniZ==0.0:
# frame.set_attributes("source", options=["All", "AGB", "Massive"])
# else:
frame.set_attributes("source", options=["All", "AGB", "SNe Ia", "Massive"])
frame.set_state_data("over_plotting_data", [])
def sel_source(attribute, value):
if value=="SNe Ia":
frame.set_state_data("elements", elements_sn1a)
frame.set_state_data("isotopes", isotopes_sn1a)
else:
frame.set_state_data("elements", elements_all)
frame.set_state_data("isotopes", isotopes_all)
frame.set_attributes("elem_numer", options=[])
frame.set_attributes("elem_denom", options=[])
frame.set_attributes("species", options=[])
elements = frame.get_state_data("elements")
isotopes = frame.get_state_data("isotopes")
frame.set_attributes("elem_numer", options=elements)
frame.set_attributes("elem_denom", options=elements)
if frame.get_attribute("iso_or_elem", "value")=="Isotopes":
frame.set_attributes("species", description="Isotope: ", options=isotopes)
elif frame.get_attribute("iso_or_elem", "value")=="Elements":
frame.set_attributes("species", description="Element: ", options=elements)
def sel_iso_or_elem(attribute, value):
elements = frame.get_state_data("elements")
isotopes = frame.get_state_data("isotopes")
if value=="Isotopes":
frame.set_attributes("species", description="Isotope: ", options=isotopes)
frame.set_attributes("species_mult", description="Isotope: ", options=isotopes_sel_mult)
elif value=="Elements":
frame.set_attributes("species", description="Element: ", options=elements)
frame.set_attributes("species_mult", description="Element: ", options=elements_sel_mult)
def run(widget):
styles = frame.get_state_data("styles")
styles.reset_line_count()
clear_output()
pyplot.close("all")
over_plotting = frame.get_attribute("over_plotting", "value")
source_map = {"All":"all", "AGB":"agb", "SNe Ia":"sn1a", "Massive":"massive"}
label_map = {"All":"", "AGB":", AGB", "SNe Ia":", SNIa", "Massive":", Massive"}
tot_mass_labels = {"all":"All", "agb":"AGB", "sn1a":"SNIa", "massive":"Massive"}
state = frame.get_state()
runs = frame.get_state_data("runs")
source = source_map[frame.get_attribute("source", "value")]
label_source = label_map[frame.get_attribute("source", "value")]
species = frame.get_attribute("species", "value")
no_runs = True
if state=="plot_totmasses":
plot_data = frame.get_state_data("over_plotting_data")
if not over_plotting:
plot_data = []
over_plot = [("source", source)]
if not over_plot in plot_data:
plot_data.append(over_plot)
frame.set_state_data("over_plotting_data", plot_data)
for data, name, Z, widget_name in runs:
if frame.get_attribute(widget_name, "value"):
no_runs = False
for item in plot_data:
kwargs = dict(item)
label = name + ": " + tot_mass_labels[kwargs["source"]]
kwargs.update({"label":label})
kwargs.update(styles.get_style())
data.plot_totmasses(**kwargs)
elif state=="plot_mass":
plot_data = frame.get_state_data("over_plotting_data")
if not over_plotting:
plot_data = []
over_plot = [("specie", species), ("source", source)]
if not over_plot in plot_data:
plot_data.append(over_plot)
frame.set_state_data("over_plotting_data", plot_data)
for data, name, Z, widget_name in runs:
if frame.get_attribute(widget_name, "value"):
no_runs = False
for item in plot_data:
kwargs = dict(item)
label = name + ": " + kwargs["specie"]
if not kwargs["source"] == "all":
label = label + ", " + tot_mass_labels[kwargs["source"]]
kwargs.update({"label":label})
kwargs.update(styles.get_style())
data.plot_mass(**kwargs)
elif state=="plot_spectro":
X = frame.get_attribute("elem_numer", "value")
Y = frame.get_attribute("elem_denom", "value")
yaxis = "["+X+"/"+Y+"]"
plot_data = frame.get_state_data("over_plotting_data")
if not over_plotting:
plot_data = []
over_plot = [("yaxis", yaxis), ("source", source)]
if not over_plot in plot_data:
plot_data.append(over_plot)
frame.set_state_data("over_plotting_data", plot_data)
for data, name, Z, widget_name in runs:
if frame.get_attribute(widget_name, "value"):
no_runs = False
for item in plot_data:
kwargs = dict(item)
label = name + ": " + kwargs["yaxis"] + ", " + tot_mass_labels[kwargs["source"]]
kwargs.update({"label":label})
kwargs.update(styles.get_style())
data.plot_spectro(**kwargs)
elif state=="plot_mass_range":
plot_data = frame.get_state_data("over_plotting_data")
if not over_plotting:
plot_data = []
over_plot = [("specie", species)]
if not over_plot in plot_data:
plot_data.append(over_plot)
frame.set_state_data("over_plotting_data", plot_data)
for data, name, Z, widget_name in runs:
if frame.get_attribute(widget_name, "value"):
no_runs = False
for item in plot_data:
kwargs = dict(item)
label = name + ": " + kwargs["specie"]
kwargs.update({"label":label})
kwargs.update(styles.get_style())
data.plot_mass_range_contributions(**kwargs)
if no_runs:
print "No runs selected."
frame.set_state_callbacks("clear_plot", clear_plot_handler, attribute=None, type="on_click")
frame.set_state_callbacks("plot_type", sel_plot_type)
frame.set_state_callbacks("source", sel_source, state=["plot_spectro", "plot_mass"])
frame.set_state_callbacks("iso_or_elem", sel_iso_or_elem)
frame.set_state_callbacks("plot", run, attribute=None, type="on_click")
frame.set_object("plot_page", widgets.VBox())
frame.set_object("warning_msg", widgets.HTML())
frame.set_object("plot_name", widgets.HTML())
frame.set_object("source_over_plotting_group", widgets.HBox())
frame.set_object("source", widgets.Dropdown())
frame.set_object("over_plotting", widgets.ToggleButton())
frame.set_object("clear_plot", widgets.Button())
frame.set_object("species_group", widgets.VBox())
frame.set_object("iso_or_elem", widgets.RadioButtons())
frame.set_object("species", widgets.Select())
frame.set_object("elem_numer", widgets.Select())
frame.set_object("elem_denom", widgets.Select())
frame.set_object("plot", widgets.Button())
frame.set_state_attribute("custom_imf_page", visible=True)
frame.set_state_attribute("load_save_imf_group", visible=True, **group_style)
frame.set_state_attribute("load_imf", "custom_imf", visible=True, description="Load custom IMF", **button_style)
frame.set_state_attribute("list_imfs", "load_custom_imf", visible=True, description="Select IMF")
frame.set_state_attribute("name_imf", "custom_imf", visible=True, description="IMF name", **text_box_style)
frame.set_state_attribute("save_imf", "custom_imf", visible=True, description="Save IMF", **button_style)
frame.set_state_attribute("delete_imf", "custom_imf", visible=True, description="Delete IMF", **button_style)
frame.set_state_attribute("text_imf", visible=True)
frame.set_state_attribute("test_imf", visible=True, description="Test selected IMF file", **button_style)
def load_imf_handler(widget):
frame.set_state("load_custom_imf")
options = ["", "Preset: default"] + list_custom_imf()
frame.set_attributes("list_imfs", options=options, value="", selected_label="")
def sel_custom_imf(name, value):
if value != "":
frame.set_state("custom_imf")
if value == "Preset: default":
frame.set_attributes("name_imf", value="")
frame.set_attributes("text_imf", value=default_custom_imf_text)
else:
text = ""
with open(custom_imf_dir + value + ".py", "r") as fin:
text = fin.read()
frame.set_attributes("name_imf", value=value)
frame.set_attributes("text_imf", value=text)
def save_imf_handler(widget):
clear_output()
pyplot.close("all")
imf_name = frame.get_attribute("name_imf", "value")
if imf_name == "":
print("Error: not IMF name given")
else:
if not os.path.isdir(custom_imf_dir):
os.mkdir(custom_imf_dir)
with open(custom_imf_dir + imf_name + ".py", "w") as fout:
fout.write(frame.get_attribute("text_imf", "value"))
print("Custom IMF saved to " + imf_name)
frame.set_state_attribute('imf_type', options=['salpeter', 'chabrier', 'kroupa', 'alphaimf'] + list_custom_imf())
def delete_imf_handler(widget):
clear_output()
pyplot.close("all")
imf_name = frame.get_attribute("name_imf", "value")
if imf_name == "":
print("Error: not IMF name given")
else:
if os.path.isdir(custom_imf_dir):
if os.path.isfile(custom_imf_dir + imf_name + ".py"):
os.remove(custom_imf_dir + imf_name + ".py")
frame.set_attributes("name_imf", value="")
frame.set_attributes("text_imf", value=default_custom_imf_text)
print("Custom IMF " + imf_name + " deleted.")
else:
print("Custom IMF, " + imf_name + ", not found!")
frame.set_state_attribute('imf_type', options=['salpeter', 'chabrier', 'kroupa', 'alphaimf'] + list_custom_imf())
def test_imf_handler(widget):
clear_output()
pyplot.close("all")
imf_name = frame.get_attribute("name_imf", "value")
if imf_name == "":
print("No IMF name given!")
return
try:
ci = load_source("custom_imf", custom_imf_dir + imf_name + ".py")
except IOError:
print("Failed to load " + imf_name + ", no IMF file found.")
return
mass_min = 0.0
mass_max = 30.0
xaxis = numpy.linspace(mass_min, mass_max, 1000)[1:]
yaxis = [0 for x in xaxis]
for i, x in enumerate(xaxis):
yaxis[i] = ci.custom_imf(x)
pyplot.plot(xaxis, numpy.log10(yaxis))
pyplot.title("IMF file test: " + imf_name)
pyplot.xlabel("mass [$M_{\odot}$]")
pyplot.ylabel("IMF")
pyplot.show()
frame.set_state_callbacks("load_imf", load_imf_handler, attribute=None, type="on_click")
frame.set_state_callbacks("list_imfs", sel_custom_imf)
frame.set_state_callbacks("save_imf", save_imf_handler, attribute=None, type="on_click")
frame.set_state_callbacks("delete_imf", delete_imf_handler, attribute=None, type="on_click")
frame.set_state_callbacks("test_imf", test_imf_handler, attribute=None, type="on_click")
frame.set_object("custom_imf_page", widgets.VBox())
frame.set_object("load_save_imf_group", widgets.HBox())
frame.set_object("load_imf", widgets.Button())
frame.set_object("list_imfs", widgets.Dropdown())
frame.set_object("name_imf", widgets.Text())
frame.set_object("save_imf", widgets.Button())
frame.set_object("delete_imf", widgets.Button())
frame.set_object("text_imf", widgets.Textarea())
frame.set_object("test_imf", widgets.Button())
frame.set_state_attribute("get_table_page", visible=True)
frame.set_state_attribute("warning_msg", visible=True, value="<h3>Error: No simulation data!</h3>", **group_style)
frame.set_state_attribute("warning_msg", states_plot, visible=False)
frame.set_state_attribute("species_mult_group", states_sim_plot, visible=True, **group_style)
frame.set_state_attribute("iso_or_elem", visible=True, description="species type: ", options=["Elements", "Isotopes"], selected_label="Elements")
frame.set_state_attribute("species_mult", visible=True, description="Element: ", options=elements_sel_mult, **text_box_style)
frame.set_state_attribute("get_table", states_sim_plot, visible=True, description="Get table links", **button_style)
frame.set_state_attribute("table_links", states_sim_plot, visible=True, value="", **group_style)
def species_mult_handler(name, value):
if "All" in value:
iso_or_elem = frame.get_attribute("iso_or_elem", "value")
if iso_or_elem == "Elements":
value = tuple(elements_all)
elif iso_or_elem == "Isotopes":
value = tuple(isotopes_all)
frame.set_attributes("species_mult", value=value, selected_labels=value)
frame.set_attributes("table_links", value="")
def get_table_handler(widget):
iso_or_elem = frame.get_attribute("iso_or_elem", "value")
species = list(frame.get_attribute("species_mult", "value"))
runs = frame.get_state_data("runs")
title = "<h3>Data table links:</h3>"
html = title
if not os.path.isdir("./evol_tables"):
os.mkdir("./evol_tables")
for data, name, Z, widget_name in runs:
if frame.get_attribute(widget_name, "value"):
file = "evol_tables/" + widget_name.replace("#", "") + "file"
if iso_or_elem == "Elements":
data.write_evol_table(species, [], file, "./")
elif iso_or_elem == "Isotopes":
data.write_evol_table([], species, file, "./")
html = html + "<p><a href=\"" + file + "\" target=\"_blank\" download>" + name + "</a></p>\n"
if html == title:
html = ""
print("No runs selected.")
frame.set_attributes("table_links", value=html)
clear_output()
pyplot.close("all")
frame.set_state_callbacks("species_mult", species_mult_handler)
frame.set_state_callbacks("get_table", get_table_handler, attribute=None, type="on_click")
frame.set_object("species_mult_group", widgets.VBox())
frame.set_object("species_mult", widgets.SelectMultiple())
frame.set_object("get_table_page", widgets.VBox())
frame.set_object("get_table", widgets.Button())
frame.set_object("table_links", widgets.HTML())
##start widget##
frame.display_object("window")
