#server = 'http://ontosoft.isi.edu:8080/wings-portal'
#server = 'http://varuns-mbp.local:9090/wings-portal'
#userid = 'admin'
#password = '******'
#password = '******'
#password = '******'
#domain = 'OpenCV'
userid = 'ravali'
password = '******'
domain = 'genomics'
# Create manage data api
data = wings.ManageData(server, userid, domain)
# Login with password
data.login(password)
with open(sys.argv[1], 'rb') as csvfile:
fdata = csv.reader(csvfile)
for row in fdata:
rnafile = row[0]
msfile = row[1]
sampleid = row[2]
patientid = row[3]
data.save_metadata(
rnafile, {
'hasSpeciesName': 'HS',
'hasParticipantID': patientid,
'hasSampleID': sampleid,
'hasDatasetID': 'COADREAD'
})
parser.add_argument("-l", "--data_location", help="Set data location")
parser.add_argument("-up",
"--upload_data",
help="Upload data from file for a data type")
parser.add_argument(
"-g",
"--get",
help="Get information (use either with data_id, data_type or none)",
action="store_true")
args = parser.parse_args()
# Create manage user api
data = wings.ManageData(args.server, args.userid, args.domain)
# Login with password
if data.login(args.password):
if args.new:
if args.data_id:
data.add_data_for_type(args.data_id, args.data_type)
elif args.data_type:
data.new_data_type(args.data_type, args.parent_type)
elif args.delete:
if args.data_id:
data.del_data(args.data_id)
elif args.data_type:
data.del_data_type(args.data_type)
elif args.get:
if args.data_id:
print(data.get_data_description(args.data_id))
elif args.data_type:
print(data.get_datatype_description(args.data_type))
import wings.data
import json
data_id = "test"
data_type = "DataObject5"
parent_type = None
server = "http://ontosoft.isi.edu:7072/wings-portal"
exportURL = "http://localhost:8080/wings-portal"
userid = "admin"
password = "******"
domain = "CaesarCypher"
#create a new data
data = wings.ManageData(server, exportURL, userid, domain)
if not data.login(password):
print("fail logging")
exit(1)
#New Datatype and create Data
data.new_data_type(data_type, None)
#New Data
data.add_data_for_type(data_id, data_type)
#Get description Dataid
data.get_data_description(data_id)
data.get_datatype_description(data_type)
print(data.get_all_items())
# #Upload data from type
upload_data = 'assets/test.txt'