def generate_requirements(valid_plugins,app_dest):
'''
generate_requirements will generate a custom setup.py from a template
this will include the python dependencies for valid plugins
'''
plugin_folder = os.path.dirname(valid_plugins[0])
v = load_plugins(valid_plugins)
# Add plugin dependencies on other plugins, even if user has not selected
plugin_deps = [x[0]["dependencies"]["plugins"] for x in v if "plugins" in x[0]["dependencies"]]
for plugin_dep in plugin_deps:
for p in plugin_dep:
if "%s/%s" %(plugin_folder,p) not in valid_plugins:
valid_plugins.append("%s/%s" %(plugin_folder,p))
# Get list of python dependencies for setup.py
python_deps = [x[0]["dependencies"]["python"] for x in v if "python" in x[0]["dependencies"]]
dependencies = []
for python_dep in python_deps:
dependencies = dependencies + python_dep
dependencies = numpy.unique(dependencies).tolist()
# Get requirements.txt to use as a template
requirements = get_template("%s/requirements.txt" %(app_dest)).split("\n")
new_requirements = numpy.unique(requirements + dependencies).tolist()
new_requirements = [x for x in new_requirements if len(x) > 0]
# Save new requirements
save_template("%s/requirements.txt" %(app_dest),"\n".join(new_requirements))
def init_scripts(scripts_dir,output_base):
'''init_scripts:
move job running scripts from template into user
scripts directory. Template substitutions will be done at
this step, to ensure that calling the init_scripts function
from a different folder will produce scripts to run with correct
analysis directory path
'''
installdir = get_installdir()
scripts_to_move = glob("%s/scripts/*" %(installdir))
for script in scripts_to_move:
script_template = get_template(script)
script_name = os.path.basename(script)
script_copy = "%s/scripts/%s" %(output_base,script_name)
save_template(script_copy,script_template)
def init_scripts(scripts_dir, output_base):
'''init_scripts:
move job running scripts from template into user
scripts directory. Template substitutions will be done at
this step, to ensure that calling the init_scripts function
from a different folder will produce scripts to run with correct
analysis directory path
'''
installdir = get_installdir()
scripts_to_move = glob("%s/scripts/*" % (installdir))
for script in scripts_to_move:
script_template = get_template(script)
script_name = os.path.basename(script)
script_copy = "%s/scripts/%s" % (output_base, script_name)
save_template(script_copy, script_template)
def generate_requirements(valid_plugins, app_dest):
'''
generate_requirements will generate a custom setup.py from a template
this will include the python dependencies for valid plugins
'''
plugin_folder = os.path.dirname(valid_plugins[0])
v = load_plugins(valid_plugins)
# Add plugin dependencies on other plugins, even if user has not selected
plugin_deps = [
x[0]["dependencies"]["plugins"] for x in v
if "plugins" in x[0]["dependencies"]
]
for plugin_dep in plugin_deps:
for p in plugin_dep:
if "%s/%s" % (plugin_folder, p) not in valid_plugins:
valid_plugins.append("%s/%s" % (plugin_folder, p))
# Get list of python dependencies for setup.py
python_deps = [
x[0]["dependencies"]["python"] for x in v
if "python" in x[0]["dependencies"]
]
dependencies = []
for python_dep in python_deps:
dependencies = dependencies + python_dep
dependencies = numpy.unique(dependencies).tolist()
# Get requirements.txt to use as a template
requirements = get_template("%s/requirements.txt" % (app_dest)).split("\n")
new_requirements = numpy.unique(requirements + dependencies).tolist()
new_requirements = [x for x in new_requirements if len(x) > 0]
# Save new requirements
save_template("%s/requirements.txt" % (app_dest),
"\n".join(new_requirements))