def add_dyn_input_hook(self, exp, dyn_port, new_port):
"""
@type new_port: InputBlockField
"""
new_inner_output_train = InnerOutputField(
name="%s_train_i" % new_port.name,
provided_data_type=new_port.required_data_type)
new_inner_output_test = InnerOutputField(
name="%s_test_i" % new_port.name,
provided_data_type=new_port.required_data_type)
self.inner_output_es_names_map[new_port.name] = \
(new_inner_output_train.name, new_inner_output_test.name)
self.register_inner_output_variables(
[new_inner_output_train, new_inner_output_test])
def __init__(self, *args, **kwargs):
super(MassUpload, self).__init__(*args, **kwargs)
self.es_mRNA_matrices = MultiUploadField()
self.es_miRNA_matrices = MultiUploadField()
self.pheno_matrices = MultiUploadField()
self.pheno_by_es_names = {}
self.labels = []
self.seq = []
self.register_inner_output_variables([InnerOutputField(
name="mRNA_es",
provided_data_type="ExpressionSet"
), InnerOutputField(
name="miRNA_es",
provided_data_type="ExpressionSet"
)])
def finish_cells_prototype_definition(self, exp, *args, **kwargs):
self.is_cells_prototype_defined = True
for field_prototype in self.cells_prototype.cells_list:
new_inner_output = InnerOutputField(
name=field_prototype.name,
provided_data_type=field_prototype.data_type)
self.register_inner_output_variables([new_inner_output])
exp.store_block(self)