def doAction(self, umlObjects, selectedObjects, umlFrame):
"""
Do the tool's action
@param OglObject [] umlObjects : list of the uml objects of the diagram
@param OglObject [] selectedObjects : list of the selected objects
@param UmlFrame umlFrame : the frame of the diagram
@since 1.0
@author C.Dutoit <*****@*****.**>
"""
filename = FileSelector("Choose a layout file to import",
wildcard="Layout file (*.lay) | *.lay",
flags=FD_OPEN | FD_FILE_MUST_EXIST | FD_CHANGE_DIR)
f = open(filename, "r")
lstFile = f.readlines()
f.close()
lst = []
for el in lstFile:
spl = el.split(",")
lst.append(spl)
print(f"Read {lst}")
for oglObject in umlObjects:
for line in lst:
if line[0] == oglObject.getPyutObject().getName():
oglObject.SetPosition(float(line[1]), float(line[2]))
oglObject.SetSize(float(line[3]), float(line[4]))
def SaveAs(self, e=None):
file = FileSelector("保存します", expanduser('~'), "untitled.wnf", "wnf",
"*.wnf")
if not file:
return
self.File = file
try:
with open(self.File, 'w', encoding='utf-8') as f:
f.write(self.editor.GetValue())
except PermissionError as err:
self.stat.SetStatusText(f"保存できませんでした。{str(err)}", 1)
Timer(2, lambda: self.stat.SetStatusText("", 1)).start()
return
self.changed = False
self.SetTitle(f"{BASETITLE} - {basename(self.File)}")
def _askForFileExport(self, defaultFileName: str = '') -> str:
"""
Called by a plugin to ask for the export file name
Returns:
"""
wxYield()
outputFormat: OutputFormatType = self.getOutputFormat()
wildCard: str = f'{outputFormat[0]} (*. {outputFormat[1]} )|*.{outputFormat[1]}'
file: str = FileSelector("Choose the export file name",
default_filename=defaultFileName,
wildcard=wildCard,
flags=FD_SAVE | FD_OVERWRITE_PROMPT | FD_CHANGE_DIR)
return file
def Open(self, e=None):
if self.changed:
dlg = MessageDialog(self,
"編集中の内容を保存して既存ファイルを開きますか？",
"確認",
style=OK | CANCEL)
if dlg.ShowModal() == ID_OK:
self.Save()
dlg.Destroy()
file = FileSelector("開くファイルを選択", expanduser('~'), "", "*.wnf")
if not file:
return
self.File = file
with open(self.File, encoding='utf-8') as f:
self.editor.SetValue(f.read())
self.SetTitle(f"{BASETITLE} - {basename(self.File)}")
self.changed = False
def _askForFileImport(self,
multiSelect: bool = False,
startDirectory: str = None):
"""
Called by plugin to ask which file must be imported
Args:
multiSelect: True to allow multi-file selection
Returns:
filename or "" for multiple=False, fileNames[] or
[] else
"",
[] indicates that the user pressed the cancel button
"""
inputFormat: PyutPlugin.INPUT_FORMAT_TYPE = self.getInputFormat()
defaultDir: str = startDirectory
if defaultDir is None:
defaultDir = self._ctrl.getCurrentDir()
if multiSelect:
dlg = FileDialog(self._umlFrame,
"Choose files to import",
wildcard=inputFormat[0] + " (*." +
inputFormat[1] + ")|*." + inputFormat[1],
defaultDir=defaultDir,
style=FD_OPEN | FD_FILE_MUST_EXIST | FD_MULTIPLE
| FD_CHANGE_DIR)
dlg.ShowModal()
if dlg.GetReturnCode() == ID_CANCEL:
return [], ""
return dlg.GetFilenames(), dlg.GetDirectory()
else:
file = FileSelector("Choose a file to import",
wildcard=inputFormat[0] + " (*." +
inputFormat[1] + ")|*." + inputFormat[1],
flags=FD_OPEN | FD_FILE_MUST_EXIST
| FD_CHANGE_DIR)
return file
def doAction(self, umlObjects, selectedObjects, umlFrame):
"""
Do the tool's action
@param OglObject [] umlObjects : list of the uml objects of the diagram
@param OglObject [] selectedObjects : list of the selected objects
@param UmlFrame umlFrame : the frame of the diagram
@since 1.0
@author C.Dutoit <*****@*****.**>
"""
file = FileSelector("Choose a file name to export layout",
wildcard="Layout file (*.lay) |*.lay",
flags=FD_SAVE | FD_OVERWRITE_PROMPT
| FD_CHANGE_DIR)
f = open(file, "w")
for el in umlObjects:
f.write(el.getPyutObject().getName() + "," +
str(el.GetPosition()[0]) + "," + str(el.GetPosition()[1]) +
"," + str(el.GetSize()[0]) + "," + str(el.GetSize()[1]) +
"\n")
f.close()
NCT_numbers = []
for a in range(len(gantt_df)):
ident = str(gantt_df['Alternative IDs'][a]).split(',')
ident = re.findall(nct, ' '.join(ident))
if len(ident) > 0:
ident = ident[0]
else:
ident = 'No NCT Identifier'
NCT_numbers.append(ident)
ncts = pd.Series(NCT_numbers)
gantt_df['NCT Number'] = ncts
return gantt_df
app = App()
ta_file = FileSelector("Please select a TA-Scan Export Saved as an .xlsx file",
default_extension='.xlsx')
ctgov_file = FileSelector(
"Please select a clinicaltrials.gov Export Saved as an .csv file",
default_extension='.csv')
# Read in TA Scan data and format keeping only necessary columns to merge with the CT.gov data
ta_df = pd.read_excel(ta_file, header=0)
ta_df = remove_nonascii(ta_df)
ta_df = extract_NCT(ta_df)
ta_df = ta_df[ta_df['NCT Number'] != 'No NCT Identifier']
ta_df = ta_df[[
'NCT Number', 'Enrollment', 'Nr sites', 'Study start', 'Study end'
]].reset_index(level=0, drop=True)
ta_df.columns = [
'NCT Number', 'Enrollment', 'Num. of Sites', 'Start Date',
'Completion Date'