def __init__(self):
super().__init__()
# check that the programs exist - this will raise an exception if
# they do not...
_Idxref()
self._background_images = None
self._index_select_images = "i"
# place to store working data
self._data_files = {}
def Idxref(self):
idxref = _Idxref(params=PhilIndex.params.xds.index)
idxref.set_working_directory(self.get_working_directory())
idxref.setup_from_imageset(self.get_imageset())
if self.get_distance():
idxref.set_distance(self.get_distance())
if self.get_wavelength():
idxref.set_wavelength(self.get_wavelength())
# if we have a refined set of parameters to apply, apply these
if Flags.get_xparm():
idxref.set_refined_origin(Flags.get_xparm_origin())
idxref.set_refined_beam_vector(Flags.get_xparm_beam_vector())
idxref.set_refined_rotation_axis(Flags.get_xparm_rotation_axis())
idxref.set_refined_distance(Flags.get_xparm_distance())
# hacks for Jira 493
if Flags.get_xparm_a():
idxref.set_a_axis(Flags.get_xparm_a())
if Flags.get_xparm_b():
idxref.set_b_axis(Flags.get_xparm_b())
if Flags.get_xparm_c():
idxref.set_c_axis(Flags.get_xparm_c())
auto_logfiler(idxref, "IDXREF")
return idxref
def Idxref(self):
from xia2.Handlers.Phil import PhilIndex
idxref = _Idxref(params=PhilIndex.params.xds.index)
idxref.set_working_directory(self.get_working_directory())
idxref.setup_from_imageset(self.get_imageset())
if self.get_distance():
idxref.set_distance(self.get_distance())
if self.get_wavelength():
idxref.set_wavelength(self.get_wavelength())
# if we have a refined set of parameters to apply, apply these
if Flags.get_xparm():
idxref.set_refined_origin(Flags.get_xparm_origin())
idxref.set_refined_beam_vector(Flags.get_xparm_beam_vector())
idxref.set_refined_rotation_axis(Flags.get_xparm_rotation_axis())
idxref.set_refined_distance(Flags.get_xparm_distance())
# hacks for Jira 493
if Flags.get_xparm_a():
idxref.set_a_axis(Flags.get_xparm_a())
if Flags.get_xparm_b():
idxref.set_b_axis(Flags.get_xparm_b())
if Flags.get_xparm_c():
idxref.set_c_axis(Flags.get_xparm_c())
auto_logfiler(idxref, 'IDXREF')
return idxref
def __init__(self):
super(XDSIndexer, self).__init__()
# check that the programs exist - this will raise an exception if
# they do not...
idxref = _Idxref()
self._background_images = None
self._index_select_images = 'i'
# place to store working data
self._data_files = { }
return