def test_M2():
z_rho_xi1 = np.array([-97.50211538, -50.04230769, -2.5825])
rho_xi0 = xroms.density(temp, salt, z_rho)
rho_xi1 = xroms.density(temp, salt, z_rho_xi1)
drhodxi = (rho_xi1[1] - rho_xi0[1]) / (2 * dx)
drhodeta = 0
var = np.sqrt(drhodxi**2 + drhodeta**2) * g / rho0
def test_N2():
rho = xroms.density(temp, salt, z_rho)
drhodz = (rho[2] - rho[0]) / (z_rho[2] - z_rho[0])
var = -g * drhodz / rho0
xrho = xroms.density(ds.temp, ds.salt, ds.z_rho)
# compare above estimate with two averaged since
# there is a grid change
assert np.allclose(xroms.N2(xrho, grid)[0, 1:3, 0, 0].mean(), var)
def test_KE():
rho = xroms.density(temp, salt, z_rho)[:, np.newaxis, np.newaxis]
s2 = (u**2 + v**2)[np.newaxis, :, :]
KE = 0.5 * rho * s2
assert np.allclose(ds.xroms.KE.xroms.to_grid(hcoord="psi").mean(),
KE.mean(),
rtol=1e-2)
def test_rho():
acc = ds.xroms.rho
assert np.allclose(acc, xroms.density(ds.temp, ds.salt, ds.z_rho))
acc.name == acc.attrs["name"]
acc.attrs["grid"] == ds.xroms.grid
items = ["T", "X", "Y", "Z", "longitude", "latitude", "vertical", "time"]
assert set(items).issubset(acc.cf.get_valid_keys())
def test_KE():
rho = xroms.density(temp, salt, z_rho)[:, np.newaxis, np.newaxis]
s2 = (u ** 2 + v ** 2)[np.newaxis, :, :]
KE = 0.5 * rho * s2
# xroms
s = xroms.speed(ds.u, ds.v, grid)
assert np.allclose(
xroms.to_grid(xroms.KE(ds.rho0, s), grid, hcoord="psi").mean(),
KE.mean(),
rtol=1e-2,
)
def test_ertel():
v_z = 0
u_z = 0
# test one corner of domain
f = ds.f[0, 0].values
vort = 0
sig0 = xroms.density(temp, salt, 0)
buoy = -g * sig0 / rho0
phi_z = (buoy[2] - buoy[0]) / (z_rho[2] - z_rho[0])
ertel = -v_z + u_z + (f + vort) * phi_z
xsig0 = xroms.potential_density(ds.temp, ds.salt)
xbuoy = xroms.buoyancy(xsig0)
assert np.allclose(xroms.ertel(xbuoy, ds.u, ds.v, ds.f, grid)[0, 1, 0, 0], ertel)
def rho(self):
"""Return existing rho or calculate, on rho/rho grids.
Notes
-----
See `xroms.density` for full docstring.
Example usage
-------------
>>> ds.xroms.rho
"""
if "rho" not in self.ds:
var = xroms.density(self.ds.temp, self.ds.salt, self.ds.z_rho)
self.ds["rho"] = var
return self.ds.rho
y = 2010
path = '/d1/shared/TXLA_ROMS/output_20yr_obc/%i/ocean_his_00*.nc' % y
ds = xroms.open_roms_netcdf_dataset(path).sel(ocean_time='%i-08' % y)
ds, grid = xroms.roms_dataset(ds, Vtransform=None)
msk = (ds.lon_rho > -94.5) * (ds.lon_rho < -89.5) * (ds.h >= 10.) * (ds.h <=
50.)
msk = msk.load()
msk[165:-1, 440:460] = False
msk[130:160, 300:350] = True
msk[76:83, 490:520] = True
h = ds.h.where(msk, drop=True)
# rho_depths = ds.z_rho.where(msk, drop=True)
# do = ds.dye_01.where(msk, drop=True)
# print("vars for ldo", flush=True)
# ldo_thk = (h + rho_depths.where(do<=60).max('s_rho')).squeeze()
# print("saving ldo", flush=True)
# ldo_thk.to_netcdf('files/ldo_2010_08.nc')
# print("ldo done", flush=True)
rho = xroms.density(ds.temp, ds.salt, ds.z_rho)
drhodz = grid.derivative(rho, 'Z', boundary='extend').where(msk, drop=True)
w_depths = ds.z_w.where(msk, drop=True)
vcrit = .1
depth_grad = w_depths.where(abs(drhodz) >= vcrit).isel(s_w=slice(1, -1))
print("vars for bbl", flush=True)
bbl = (h + depth_grad.min('s_w')).squeeze()
print("ready", flush=True)
bbl = bbl.to_netcdf('files/bbl_2010_08_v2.nc')
print("done", flush=True)
def test_mld():
# choose threshold so that z_rho[-2] is the mld
sig0 = xroms.density(temp, salt, 0)
thresh = sig0[-2] - sig0[-1]
assert np.allclose(ds.xroms.mld(thresh=thresh)[0, 0, 0], z_rho[-2])
def test_sig0():
assert np.allclose(ds.xroms.sig0[0, :, 0, 0], xroms.density(temp, salt, 0))
def test_rho():
assert np.allclose(ds.xroms.rho[0, :, 0, 0],
xroms.density(temp, salt, z_rho))
def test_mld():
# choose threshold so that z_rho[-2] is the mld
xsig0 = xroms.density(ds.temp, ds.salt, 0)
thresh = xsig0[0, -2, 0, 0] - xsig0[0, -1, 0, 0]
assert np.allclose(
xroms.mld(xsig0, ds.h, ds.mask_rho, thresh=thresh)[0, 0, 0], z_rho[-2])
def test_buoyancy():
xsig0 = xroms.potential_density(ds.temp, ds.salt)
xbuoy = xroms.buoyancy(xsig0)
sig0 = xroms.density(temp, salt, 0)
buoy = -g * sig0 / rho0
assert np.allclose(xbuoy[0, :, 0, 0], buoy)
def test_potential_density():
sig0 = xroms.density(temp, salt, 0)
xsig0 = xroms.potential_density(ds.temp, ds.salt)
assert np.allclose(xsig0[0, :, 0, 0], sig0)
def test_rho():
rho = xroms.density(temp, salt, z_rho)
xrho = xroms.density(ds.temp, ds.salt, ds.z_rho)
assert np.allclose(xrho[0, :, 0, 0], rho)