def rd(self, line):
"""Read memory block"""
args = parse_argstring(self.rd, line)
d = self.shell.user_ns['d']
dump(d,
args.address,
args.size,
fast=args.fast,
check_fast=args.check_fast,
addr_space=args.space)
def print_dump(tree, options):
import report, paths, dump
xp = paths.frameset_dict[options.path_name]
pages = report.frameset_content(tree, xp.results(tree))
dump = dump.dumpers[options.output_format]
print dump(pages, options)
def rd(self, line):
"""Read memory block"""
args = parse_argstring(self.rd, line)
d = self.shell.user_ns['d']
dump(d, args.address, args.size, fast=args.fast, check_fast=args.check_fast, addr_space=args.space)
steps_loop = len(steps_list)
# Define the temperature
temp = '0.45'
for q in range(0,strain_loop):
strain = strain_list[q]
# Define an array to store the MSD values, initially 0
MSD = np.zeros(num_parts,dtype=float)
print len(MSD)
# Read in the dump files
d = dump('Shear_BLJ_glass_TEMP'+temp+'_STRAIN'+strain+'_DIRxy_EQUIL.dump')
df = dump('Shear_BLJ_glass_TEMP'+temp+'_STRAIN'+strain+'_DIRxy.REMAPPED.dump')
# Assign names to columns
d.map(1,"id",2,"type",3,"xu",4,"yu",5,"zu",6,"vx",7,"vy",8,"vz",9,"ix",10,"iy",11,"iz",12,"x",13,"y",14,"z")
df.map(1,"idf",2,"typef",3,"xuf",4,"yuf",5,"zuf",6,"vxf",7,"vyf",8,"vzf",9,"ixf",10,"iyf",11,"izf",12,"xf",13,"yf",14,"zf")
# Now we need to compute the mean square displacement by finding the particle data at each snapshot!
# Isolate the initial positions of all the particles to be used later!
d.tselect.one(50000)
d.sort()
t = d.time()
int_x,int_y = d.vecs(t[-1],"x","y")
