def plotFishPositionVsTime(jsonData, startState=1, endState=0, smooth=5, axis=0, fmt='b-',wid=1):
state = jsonData['stateinfo']
midLine = (jsonData['tankSize_mm'][axis])/2.0
st,_,nS,_ = aba.state_to_time(jsonData,startState)
_,et,_,nE = aba.state_to_time(jsonData,endState)
tracking = aba.getTracking(jsonData)
tracking = tracking[np.logical_and(tracking[:,0] > st, tracking[:,0] < et),:].copy()
frametime = tracking[:,0] - st
position = tracking[:,axis+1]
if 'OMRinfo' in jsonData.keys():
results = aba.getOMRinfo(jsonData, tankLength =midLine*2)
color = {-1:'red', 1:'blue'}
hatch = {-1:'\\', 1:'/'}
os = results['omrResults']['st']
oe = results['omrResults']['et']
od = results['omrResults']['dir']
for n in range(len(os)):
p1 = mpl.patches.Rectangle((os[n]-st,0),
width=oe[n]-os[n],
height=midLine*2,alpha=0.5,
color=[.5,1,.5],hatch=hatch[od[n]])
pyplot.gca().add_patch(p1)
#pyplot.text(os[n]-st+(oe[n]-os[n])/3, 45, '%0.2f'%results['omrResults']['maxdist'][n])
pyplot.plot(frametime, position, fmt, lw=1)
if smooth>0:
import scipy
pyplot.plot(frametime, scipy.convolve(position,np.ones(smooth)/smooth, mode='same'))
pyplot.ylim([0,midLine*2])
pyplot.xlim([0,et-st])
if axis==0:
pyplot.ylabel('')
else:
pyplot.ylabel('')
pyplot.xlabel('Time (s)')
