def getReadLengthGraph(self):
#Stores final data
Summary = []
self.DNA_current = self.DNAList[0]
Start_length = 0
End_length = 40000
self.RepeatPositions = range(
self.SideLengths,
len(self.DNA_current) - Start_length - self.SideLengths)
for length in range(Start_length, End_length):
length += self.Gap
Answer = self.NumberofRepeatsofLengthL(length)
if False == Answer[3]:
break
print("Length", length, "Answer", Answer)
Summary += [Answer]
CommonFunctions.WriteArrayinFile(
Summary, "RepeatStructure" + self.Filename[:-6] + ".csv")
def getUncertainty(self):
#Stores final data
Summary = []
length = 1
Start_length = 0
self.DNA_current = self.DNAList[0]
self.RepeatPositions = range(
self.SideLengths,
len(self.DNA_current) - Start_length - self.SideLengths)
while True:
length += self.Gap
Answer = self.RepeatsofLengthL(length)
#print("Answer", Answer)
Summary += [Answer]
if Answer[-4] < 1:
break
CommonFunctions.WriteArrayinFile(
Summary, "Uncertainity_Summary_" + self.Filename[:-6] + ".csv")
