def genomeCoor2geneCoor(self, chrID, start, end, strand):
"""
chrID -- Chromosome id
start -- Chromosome-based start position
end -- Chromosome-based end position
strand -- Chromosome strand
Convert genome-based coordinates to gene-based coordinates
Return [ [chrID, chrStart, chrEnd, geneID, geneStart, geneEnd], ... ]
"""
GeneBin = self.getGeneBin()
return CoorFunc.genomeCoor2geneCoor(GeneBin, self, chrID, start, end, strand)
def genomeCoor2geneCoor(self, Chr, Start, End, Strand):
GeneBin = self.getGeneBin()
return CoorFunc.genomeCoor2geneCoor(GeneBin, self, Chr, Start, End,
Strand)
def genomeCoor2geneCoor(self, Chr, Start, End, Strand):
GeneBin = self.getGeneBin()
return CoorFunc.genomeCoor2geneCoor(GeneBin, self, Chr, Start, End, Strand)