def get_form():
"""
@return: the body of a form
"""
# define the default xml string
default_xml_string = DirectProtein.get_sample_xml_string()
# define the form objects
return [Form.MultiLine('model', 'mixture model', default_xml_string)]
def get_form():
"""
@return: the body of a form
"""
# define the default xml string
default_xml_string = DirectProtein.get_sample_xml_string()
# define the form objects
return [Form.MultiLine('model', 'mixture model', default_xml_string)]
def get_form():
"""
@return: the body of a form
"""
# define the tree string
tree_string = '(((Human:0.1, Chimpanzee:0.2):0.8, Gorilla:0.3):0.7, Orangutan:0.4, Gibbon:0.5);'
tree = Newick.parse(tree_string, Newick.NewickTree)
formatted_tree_string = Newick.get_narrow_newick_string(tree, 60)
# define the form objects
form_objects = [
Form.MultiLine('tree', 'newick tree',
formatted_tree_string),
Form.MultiLine('model', 'Direct Protein mixture model',
DirectProtein.get_sample_xml_string().strip()),
Form.Integer('ncols', 'sample this many codon columns',
100, low=1, high=1000)]
return form_objects
def get_form():
"""
@return: the body of a form
"""
default_xml_string = DirectProtein.get_sample_xml_string().strip()
return [Form.MultiLine('model', 'mixture model', default_xml_string)]
def get_form():
"""
@return: the body of a form
"""
default_xml_string = DirectProtein.get_sample_xml_string().strip()
return [Form.MultiLine('model', 'mixture model', default_xml_string)]
