def main(file, geojson=False, classes=None):
(root, extension) = os.path.splitext(file)
if not extension:
extension = '.xml'
diagram = parse(root + extension)
if classes:
utils.mkdir(root)
utils.mkdir('{}/images'.format(root))
utils.mkdir('{}/features'.format(root))
defines_top = DefinesStore.top()
export_diagram_layer(diagram, 'background', root, geojson, excludes=frozenset(classes))
for cls in classes:
DefinesStore.reset(defines_top)
export_diagram_layer(diagram, cls, root, geojson)
else:
try:
import OpenCOR as oc
svg = diagram.svg()
browser = oc.browserWebView()
browser.setContent(svg, "image/svg+xml")
except ModuleNotFoundError:
export_diagram_layer(diagram, None, root, geojson)
s.data().setEndingPoint(0.6)
s.data().setPointInterval(0.005)
s.reset()
s.run()
'''
s = oc.simulation()
diagram = Diagram('noble_1962.svg', s, 0.04, 0.60, 's')
diagram.add_channel('sodium_channel/i_Na', 'i_Na', (183.849, 49.756), 'V', 'red')
diagram.add_channel('potassium_channel/i_K', 'i_K', (80.867, 49.756), 'V-', '#b666d2')
diagram.add_channel('leakage_current/i_Leak', 'i_Leak', (133.551, 167.485), 'V', 'orange')
svg = diagram.generate_svg(speed=0.5, period=25)
browser = oc.browserWebView()
browser.setContent(svg, "image/svg+xml")
f = open('noble_1962_animated.svg', 'w')
f.write(svg)
f.close()
'''
# svg = animate_diagram('ten_tusscher_2004.svg', s, {'sodium_dynamics/Na_i': 'i_Na'}, 0, 1000, 10)
'i_up'
'i_leak'
'i_rel'
'i_Kr'
'i_Ks'
'i_K1'