def getMemeChipSeedMotifs(infile, outfile):
''' extract the seed motifs from the MEME-ChIP output'''
motifs = infile
track = os.path.basename(motifs)
alignments = os.path.join(PARAMS["exportdir"], "memechip.dir", track,
"motif_alignment.txt")
PipelineMotifs.getSeedMotifs(motifs, alignments, outfile)
def getDiscDremeSeeds(infiles, outfile):
''' extract seed motifs for MEME and DREME output '''
alignments, motifs = infiles
PipelineMotifs.getSeedMotifs(motifs, alignments, outfile)