import os
import sys
# Add relative path libraries
SCRIPT_DIR = os.path.abspath(os.path.dirname(__file__))
sys.path.append(os.path.abspath(os.path.sep.join([SCRIPT_DIR, "..", "lib"])))
import Repository
if __name__ == "__main__":
import argparse
parser = argparse.ArgumentParser(
description='Attach an app to an existing sample')
parser.add_argument('-s',
'--sample',
type=str,
dest="sample",
required=True,
help='name of sample')
parser.add_argument('-a',
'--app',
type=str,
dest="app",
required=True,
help='name of app')
args = parser.parse_args()
Repository.AddSampleApp(args.sample, args.app)
elif args.lims:
samples, relationships = Repository.ConfigureSamplesFromLIMSFile(projectName, args.lims)
elif args.name:
if not args.app:
print "if you specify a sample, you need to specify an app"
sys.exit(1)
# build up the variables we need to create the sample(s) and any specified relationships
sampleName = args.name
appName = args.app
samples = set()
relationships = set()
sample = Repository.AddSample(sampleName, projectName)
# keep track of the samples we build so we can report on them
if sample:
samples.add(sample)
Repository.AddSampleApp(sampleName, appName)
if args.related or args.relationship:
if not args.related or not args.relationship:
print "to add a relationship need both related sample and relationship name"
sys.exit(1)
# if a relationship has been specified, create the target sample...
toSample = args.related
relationshipName = args.relationship
sample = Repository.AddSample(
sampleName=toSample,
projectName=projectName
)
if sample:
samples.add(sample)
# ... and then create the relationship
relationship = Repository.AddSampleRelationship(
