def getTruth3B(yml_ob,truth_vcf_prefix,vcf_location,filename=''): data_2 = getTruth2A(yml_ob,truth_vcf_prefix,vcf_location) cluster_assignments = SMCScoring.validate2Afor3A(data_2,data_2.count('\n')+1) data_3 = getTruth3A(yml_ob,truth_vcf_prefix,vcf_location) adm = SMCScoring.validate3A(data_3,cluster_assignments,data_2.count('\n')+1) if filename: np.savetxt(filename,adm) return adm
def getTruth3B(yml_ob, truth_vcf_prefix, vcf_location, filename=''): data_2 = getTruth2A(yml_ob, truth_vcf_prefix, vcf_location) cluster_assignments = SMCScoring.validate2Afor3A(data_2, data_2.count('\n') + 1) data_3 = getTruth3A(yml_ob, truth_vcf_prefix, vcf_location) adm = SMCScoring.validate3A(data_3, cluster_assignments, data_2.count('\n') + 1) if filename: np.savetxt(filename, adm) return adm
def getTruth2B(yml_ob,truth_vcf_prefix,vcf_location,filename=''): data = getTruth2A(yml_ob,truth_vcf_prefix,vcf_location) ccm = SMCScoring.validate2A(data,data.count('\n')+1) if filename: np.savetxt(filename,ccm) return ccm
def getTruth2B(yml_ob, truth_vcf_prefix, vcf_location, filename=''): data = getTruth2A(yml_ob, truth_vcf_prefix, vcf_location) ccm = SMCScoring.validate2A(data, data.count('\n') + 1) if filename: np.savetxt(filename, ccm) return ccm