def get_pnode():
import socket
user=os.environ['OS_USERNAME']
password=os.environ['OS_PASSWORD']
type="NICE"
endpoint = "https://network.cern.ch/sc/soap/soap.fcgi?v=5"
ns = "http://network.cern.ch/NetworkService"
SOAPserver=SOAPpy.SOAPProxy(endpoint, namespace=ns)
#Get the auth token
atoken=SOAPserver.getAuthToken(user,password,type)
#Build the auth header
authStruct=SOAPpy.structType(data = {"token" :atoken})
#authStruct._ns1=("ns1","urn:NetworkService")
authHeader=SOAPpy.headerType(data = {"Auth":authStruct})
hostname = os.environ['HOSTNAME']
SOAPserver.header=authHeader
return SOAPserver.vmGetInfo(hostname).VMParent
outputs = 'UniGene ID, PDB ID'
biodbnet = WSDL.Proxy(
'http://biodbnet.abcc.ncifcrf.gov/webServices/bioDBnet.wsdl')
#inputResult = biodbnet.getInputs()
#print "inputResult : " + inputResult
#outputResult = biodbnet.getOutputsForInput(input_type)
#print "outputResult : " + outputResult
#directOutputResult = biodbnet.getDirectOutputsForInput(input_type)
#print "directOutputResult : " + directOutputResult
db2dbParams = SOAPpy.structType({
'input': input_type,
'inputValues': input_value,
'outputs': outputs
})
db2dbResult = biodbnet.db2db(db2dbParams)
result = db2dbResult.split("\n")
result[0] = result[0].split("\t")
result[1] = result[1].split("\t")
for a, b, c in result[0:2]:
print a.ljust(25) + b.ljust(25) + c.ljust(25)
else:
print """This is a script for converting Ensembl IDs to Uniprot and/or PDB
Please specify what type of input Ensembl ID is provided (gene, protein or transcript).
Usage: python db2db_converter.py [gene|protein|transcript] [Ensembl ID]
def soap_struct(self):
return SOAPpy.structType({"a": "c"})
def soap_struct(self):
return SOAPpy.structType({"a": "c"})
headers.debug_association_type = "NotAssociated"
#headers.debug_association_type = "Active"
#else:
#headers.debug_association_type = "Active"
# Set service connection
service = SOAPpy.SOAPProxy(
server + "/api/adsense/v3/AccountService",
namespace="http://www.google.com/api/adsense/v3",
header=headers)
# To view xml request/response set service.config.debug = 1
service.config.debug = 0
# Set the parameters
login_email = SOAPpy.Types.untypedType(name="loginEmail", data=loginEmail)
entity_type = SOAPpy.structType(name="entityType")
entity_type._addItem("value","Individual")
website_url = SOAPpy.Types.untypedType(name="websiteUrl", data=profile_url)
website_locale = SOAPpy.Types.untypedType(name="websiteLocale", data="en")
users_preferred_locale = SOAPpy.Types.untypedType(name="usersPreferredLocale", data="en_US")
email_promotion_preferences = SOAPpy.Types.untypedType(name="emailPromotionsPreference", data="true")
syn_service_types0 = SOAPpy.structType(name="synServiceTypes")
syn_service_types0._addItem(name="value",value="ContentAds")
syn_service_types1 = SOAPpy.structType(name="synServiceTypes")
syn_service_types1._addItem(name="value",value="SearchAds")
developer_url = SOAPpy.Types.untypedType(name="developerUrl", data=developerUrl)
# Create an adsense account, might throw a soap exception
# on user input or error upon trying to connect
print "Incorrect parameter " + input_type
sys.exit(0)
outputs = 'UniGene ID, PDB ID'
biodbnet = WSDL.Proxy('http://biodbnet.abcc.ncifcrf.gov/webServices/bioDBnet.wsdl')
#inputResult = biodbnet.getInputs()
#print "inputResult : " + inputResult
#outputResult = biodbnet.getOutputsForInput(input_type)
#print "outputResult : " + outputResult
#directOutputResult = biodbnet.getDirectOutputsForInput(input_type)
#print "directOutputResult : " + directOutputResult
db2dbParams = SOAPpy.structType({'input': input_type, 'inputValues': input_value, 'outputs': outputs})
db2dbResult = biodbnet.db2db(db2dbParams)
result = db2dbResult.split("\n")
result[0] = result[0].split("\t")
result[1] = result[1].split("\t")
for a,b,c in result[0:2]:
print a.ljust(25) + b.ljust(25) + c.ljust(25)
else:
print """This is a script for converting Ensembl IDs to Uniprot and/or PDB
Please specify what type of input Ensembl ID is provided (gene, protein or transcript).
Usage: python db2db_converter.py [gene|protein|transcript] [Ensembl ID]
For example:
python db2db_converter.py transcript ENST00000248342
# Sample code to add a generate ad code snippet through Adsense API # ##################################################################### import sys import SOAPpy dev_email = sys.argv[1] dev_password = sys.argv[2] server = sys.argv[3] client_id = sys.argv[4] # Set headers headers = SOAPpy.Types.headerType() headers.developer_email = dev_email headers.developer_password = dev_password headers.client_id = client_id # Set service connection service = SOAPpy.SOAPProxy( server + "/api/adsense/v3/AccountService", namespace="http://www.google.com/api/adsense/v3", header=headers) service.config.debug = 0 syn_service_types0 = SOAPpy.structType(name="synServiceTypes") syn_service_types0._addItem(name="value",value="ContentAds") response = service.addSyndicationService(syn_service_types0) print response
import sys
sys.path.insert(1, "..")
import SOAPpy
import time
dep = SOAPpy.dateTimeType((2004, 3, 24, 12, 30, 59, 4, 86, 0))
ret = SOAPpy.dateTimeType((2004, 3, 26, 12, 30, 59, 4, 86, 0))
in0 = SOAPpy.structType()
in0._addItem('outwardDate', dep)
in0._addItem('returnDate', ret)
in0._addItem('originAirport', 'den')
in0._addItem('destinationAirport', 'iad')
x = SOAPpy.buildSOAP(
in0,
method="getAirFareQuote",
namespace="urn:SBGAirFareQuotes.sbg.travel.ws.dsdata.co.uk"
)
wsdl = 'http://www.xmethods.net/sd/2001/TemperatureService.wsdl'
proxy = SOAPpy.WSDL.Proxy(wsdl)
import sys
sys.path.insert(1, "..")
import SOAPpy
import time
dep = SOAPpy.dateTimeType((2004, 3, 24, 12, 30, 59, 4, 86, 0))
ret = SOAPpy.dateTimeType((2004, 3, 26, 12, 30, 59, 4, 86, 0))
in0 = SOAPpy.structType()
in0._addItem('outwardDate', dep)
in0._addItem('returnDate', ret)
in0._addItem('originAirport', 'den')
in0._addItem('destinationAirport', 'iad')
x = SOAPpy.buildSOAP(
in0,
method="getAirFareQuote",
namespace="urn:SBGAirFareQuotes.sbg.travel.ws.dsdata.co.uk")
wsdl = 'http://www.xmethods.net/sd/2001/TemperatureService.wsdl'
proxy = SOAPpy.WSDL.Proxy(wsdl)
