def test_Dialign_simple_with_MSF_output(self):
"""Simple round-trip through app with infile, output MSF."""
cmdline = DialignCommandline(dialign_exe)
# Test with properties
cmdline.input = self.infile1
cmdline.msf = True
self.assertEqual(str(cmdline), dialign_exe + " -msf Fasta/f002")
stdout, stderr = cmdline()
self.assertEqual(stderr, "")
self.assertEqual(stdout, "")
self.assertTrue(os.path.exists(self.outfile1))
self.assertTrue(os.path.exists(self.outfile2))
def test_Dialign_simple_with_MSF_output(self):
"""Simple round-trip through app with infile, output MSF."""
cmdline = DialignCommandline(dialign_exe)
# Test with properties
cmdline.input = self.infile1
cmdline.msf = True
self.assertEqual(str(cmdline), dialign_exe + " -msf Fasta/f002")
stdout, stderr = cmdline()
self.assertEqual(stderr, "")
self.assertEqual(stdout, "")
self.assertTrue(os.path.exists(self.outfile1))
self.assertTrue(os.path.exists(self.outfile2))
def test_Dialign_simple_with_MSF_output(self):
"""Simple round-trip through app with infile, output MSF
"""
cmdline = DialignCommandline(dialign_exe)
#Test with properties
cmdline.input = self.infile1
cmdline.msf = True
self.assertEqual(str(cmdline), dialign_exe + " -msf Fasta/f002")
result, stdout, stderr = Application.generic_run(cmdline)
self.assertEqual(stdout.read(), "")
self.assertEqual(stderr.read(), "")
self.assertEqual(result.return_code, 0)
self.assert_(os.path.exists(self.outfile1))
self.assert_(os.path.exists(self.outfile2))
self.assertEqual(str(result._cl), str(cmdline))
def test_Dialign_simple_with_MSF_output(self):
"""Simple round-trip through app with infile, output MSF
"""
cmdline = DialignCommandline(dialign_exe)
#Test with properties
cmdline.input = self.infile1
cmdline.msf = True
self.assertEqual(str(cmdline), dialign_exe + " -msf Fasta/f002")
result, stdout, stderr = Application.generic_run(cmdline)
self.assertEqual(stdout.read(), "")
self.assertEqual(stderr.read(), "")
self.assertEqual(result.return_code, 0)
self.assert_(os.path.exists(self.outfile1))
self.assert_(os.path.exists(self.outfile2))
self.assertEqual(str(result._cl), str(cmdline))
def test_Dialign_simple_with_MSF_output(self):
"""Simple round-trip through app with infile, output MSF
"""
cmdline = DialignCommandline(dialign_exe)
#Test with properties
cmdline.input = self.infile1
cmdline.msf = True
self.assertEqual(str(cmdline), dialign_exe + " -msf Fasta/f002")
child = subprocess.Popen(str(cmdline),
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
shell=(sys.platform!="win32"))
return_code = child.wait()
self.assertEqual(return_code, 0)
self.assertEqual(child.stdout.read(), "")
self.assertEqual(child.stderr.read(), "")
self.assert_(os.path.exists(self.outfile1))
self.assert_(os.path.exists(self.outfile2))
del child