def start_description_block(self, tag, attrs):
j = attrs.get("join", None)
if j is None:
self.join_fctn = Decode.join_fixspaces
else:
self.join_fctn = Decode.make_typechecked_decoder(j, list, str)
self.descriptions = []
def end_hsp_value(self, tag):
s = self.get_characters()
if self.value_name is not None:
if self.value_name == "float":
s = float(s)
else:
s = Decode.make_decoder(self.value_convert)(s)
self.hsp_values[self.value_name] = s
def start_feature_block(self, tag, attrs):
jf = attrs.get("join-description", None)
if jf is None:
self.join_feature_description = Decode.join_fixspaces
else:
self.join_feature_description = Decode.make_typechecked_decoder(
jf, list, str)
self.settings["location-style"] = attrs.get("location-style", None)
jq = attrs.get("join-qualifier", None)
if jq is None:
self.settings["qualifier_join_func"] = Decode.join_fixspaces
else:
self.settings["qualifier_join_func"] = \
Decode.make_typechecked_decoder(jq, list, str)
self.features = []
def start_feature_qualifier(self, tag, attrs):
self.name = None
self.description = []
qj = attrs.get("join-qualifier", None)
if qj is None:
self.join = self.settings["qualifier_join_func"]
else:
self.join = Decode.make_typechecked_decoder(qj, list, str)
def start_sequence_block(self, tag, attrs):
self.local_alphabet = attrs.get("alphabet", None)
self.gapchar = attrs.get("gapchar", None)
self.stopchar = attrs.get("stopchar", None)
j = attrs.get("join", None)
if j is not None:
self.join_func = Decode.make_typechecked_decoder(j, list, str)
else:
self.join_func = None
self.sequences = []
def end_search_table_value(self, tag):
s = self.get_characters()
if self.value_decode is not None:
x = self.value_decode
if x == "int":
s = int(s)
elif x == "float":
s = float(s)
else:
s = Decode.make_decoder(x)(s)
self.values[self.value_name] = s
def start_feature(self, tag, attrs):
self.location_style = attrs.get("location-style",
self.settings["location-style"])
j = attrs.get("join-feature", None)
if j is None:
self.text_join_func = "".join
else:
self.text_join_func = Decode.make_typechecked_decoder(j, list, str)
self.location_start = None
self.location_end = None
self.text_lines = []