def test_phase(self):
"""
Compares phase generation to matlab results.
"""
expected_gpe = get_data_with_key(TEST_DIR, TEST_FILE, "gpe")
expected_petable = get_data_with_key(TEST_DIR, TEST_FILE, "petable")
Np = 32
Fov_p = 7
gpe, petable = generate_phase_encode_gradient(Np, Fov_p, g_max, s_max, dt)
self.assertTrue(np.allclose(expected_gpe, gpe))
self.assertTrue(np.allclose(expected_petable, petable))
def test_readout(self):
"""
Compares readout generation to matlab results.
"""
expected_gx = get_data_with_key(TEST_DIR, TEST_FILE, "gx")
expected_rowin = get_data_with_key(TEST_DIR, TEST_FILE, "rowin")
Nf = 64
Fov_r = 14
bwpp = 1862.4
gx, rowin = generate_readout_gradient(Nf, Fov_r, bwpp, g_max, s_max, dt)
self.assertTrue(np.allclose(expected_gx, gx))
self.assertTrue(np.allclose(expected_rowin, rowin))
def test_phase(self):
"""
Compares phase generation to matlab results.
"""
expected_gpe = get_data_with_key(TEST_DIR, TEST_FILE, "gpe")
expected_petable = get_data_with_key(TEST_DIR, TEST_FILE, "petable")
Np = 32
Fov_p = 7
gpe, petable = generate_phase_encode_gradient(Np, Fov_p, g_max, s_max,
dt)
self.assertTrue(np.allclose(expected_gpe, gpe))
self.assertTrue(np.allclose(expected_petable, petable))
def test_readout(self):
"""
Compares readout generation to matlab results.
"""
expected_gx = get_data_with_key(TEST_DIR, TEST_FILE, "gx")
expected_rowin = get_data_with_key(TEST_DIR, TEST_FILE, "rowin")
Nf = 64
Fov_r = 14
bwpp = 1862.4
gx, rowin = generate_readout_gradient(Nf, Fov_r, bwpp, g_max, s_max,
dt)
self.assertTrue(np.allclose(expected_gx, gx))
self.assertTrue(np.allclose(expected_rowin, rowin))
def test_waveforms(self):
"""
Tests waveforms against matlab code results.
"""
expected_gy = get_data_with_key(TEST_DIR, TEST_FILE, "gy")
Np = 32
fov = 7
smax = 15000
gmax = 4
gamma = 4257
dt = 4e-6
kmax = 1/(fov/Np)/2
area = kmax / gamma
gy = minimum_time_gradient(area, gmax, smax, dt)
self.assertTrue(np.allclose(expected_gy, gy))
def test_sinc_pulse(self):
"""
Tests generation of sinc pulse.
"""
expected_mxy = get_data_with_key(TEST_DIR, "rf_test", "mxy")
duration = 3.2e-3
dt = duration / 256
flip = np.pi / 2
tbw = 8
rf = sinc_pulse(tbw, flip, duration, dt)
g = np.ones(rf.size) * .6
dp = np.linspace(-2, 2, 512)
mx0 = np.zeros(512)
my0 = np.zeros(512)
mz0 = np.ones(512)
mx, my, mz = bloch(rf, g, dt, 100, 100, 0, dp, 0, mx0, my0, mz0)
mxy = mx + 1.0j * my
np.allclose(expected_mxy, mxy)
def test_sinc_pulse(self):
"""
Tests generation of sinc pulse.
"""
expected_mxy = get_data_with_key(TEST_DIR, "rf_test", "mxy")
duration = 3.2e-3
dt = duration / 256
flip = np.pi / 2
tbw = 8
rf = sinc_pulse(tbw, flip, duration, dt)
g = np.ones(rf.size) * .6
dp = np.linspace(-2, 2, 512)
mx0 = np.zeros(512)
my0 = np.zeros(512)
mz0 = np.ones(512)
mx, my, mz = bloch(rf, g, dt, 100, 100, 0, dp, 0, mx0, my0, mz0)
mxy = mx + 1.0j*my
np.allclose(expected_mxy, mxy)