def build_xcpl_nml(argv, compclass):
###############################################################################
caseroot = parse_input(argv)
compname = "x" + compclass
caseroot = parse_input(argv)
case = Case(caseroot)
rundir = case.get_value("RUNDIR")
ninst = case.get_value("NINST_%s" % compclass.upper())
nx = case.get_value("%s_NX" % compclass.upper())
ny = case.get_value("%s_NY" % compclass.upper())
extras = []
dtype = 1
npes = 0
length = 0
if compname == "xatm":
if ny == 1:
dtype = 2
extras = [["24",
"ncpl number of communications w/coupler per dat"],
["0.0",
"simul time proxy (secs): time between cpl comms"]]
elif compname == "xglc" or compname == "xice":
dtype = 2
elif compname == "xlnd":
dtype = 11
elif compname == "xocn":
dtype = 4
elif compname == "xrof":
dtype = 11
flood_mode = Case('XROF_FLOOD_MODE')
if flood_mode == "ACTIVE":
extras = [[".true.", "flood flag"]]
else:
extras = [[".false.", "flood flag"]]
for i in range(1, ninst + 1):
# If only 1 file, name is 'compclass_in'
# otherwise files are 'compclass_in0001', 'compclass_in0002', etc
if ninst == 1:
filename = os.path.join(rundir, "%s_in" % compname)
else:
filename = os.path.join(rundir, "%s_in%4.4d" % (compname, i))
with open(filename, 'w') as infile:
infile.write("%-20d ! i-direction global dimension\n" % nx)
infile.write("%-20d ! j-direction global dimension\n" % ny)
infile.write("%-20d ! decomp_type 1=1d-by-lat, 2=1d-by-lon,"
" 3=2d, 4=2d evensquare, 11=segmented\n" % dtype)
infile.write("%-20d ! num of pes for i (type 3 only)\n" % npes)
infile.write("%-20d ! length of segments (type 4 only)\n"
% length)
for extra in extras:
infile.write("%-20s ! %s\n" % (extra[0], extra[1]))
def build_data_lib(argv, compclass):
###############################################################################
caseroot, libroot, bldroot = parse_input(argv)
case = Case(caseroot)
cimeroot = case.get_value("CIMEROOT")
# Write directory list (Filepath)
compname = "d" + compclass
with open('Filepath', 'w') as out:
out.write(os.path.join(caseroot, "SourceMods", "src.%s" %compname) + "\n")
out.write(os.path.join(cimeroot, "components", "data_comps", compname) + "\n")
# Build the component
run_gmake(case, compclass, libroot)
def preview_namelists(dryrun=False, case=None, casedir=None):
if (case is None):
if (casedir is None):
case = Case()
else:
case = Case(case_root=casedir)
# Get data from XML
exeroot = case.get_value("EXEROOT")
libroot = case.get_value("LIBROOT")
incroot = case.get_value("INCROOT")
rundir = case.get_value("RUNDIR")
caseroot = case.get_value("CASEROOT")
cimeroot = case.get_value("CIMEROOT")
casebuild = case.get_value("CASEBUILD")
testcase = case.get_value("TESTCASE")
compiler = case.get_value("COMPILER")
mach = case.get_value("MACH")
debug = case.get_value("DEBUG")
mpilib = case.get_value("MPILIB")
logging.debug("LID is: '%s'" % os.getenv("LID", ""))
logging.debug("caseroot is: '%s'" % caseroot)
dryrun = True if (testcase == "SBN") else dryrun
models = ["atm", "lnd", "ice", "ocn", "glc", "wav", "rof", "cpl"]
docdir = os.path.join(caseroot, "CaseDocs")
if (dryrun):
# Only create rundir
try:
os.makedirs(rundir)
except OSError:
logging.warning("Not able to create $RUNDIR, trying a subdirectory of $CASEROOT")
rundir = os.path.join(caseroot, rundir)
try:
os.makedirs(rundir)
logging.info("Success! Setting RUNDIR=%s" % rundir)
case.set_value("RUNDIR", rundir)
except OSError:
expect(False, "Could not create rundir")
else:
# Load modules
env_module = EnvModule(mach, compiler, cimeroot, caseroot, mpilib, debug)
env_module.load_env_for_case()
# Make necessary directories
dirs_to_make = [os.path.join(exeroot, model, "obj") for model in models]
dirs_to_make.extend([exeroot, libroot, incroot, rundir, docdir])
for dir_to_make in dirs_to_make:
if (not os.path.isdir(dir_to_make)):
try:
logging.debug("Making dir '%s'" % dir_to_make)
os.makedirs(dir_to_make)
except OSError as e:
expect(False, "Could not make directory '%s', error: %s" % (dir_to_make, e))
# Create namelists
for model in models:
model_str = "drv" if model == "cpl" else model
config_file = case.get_value("CONFIG_%s_FILE" % model_str.upper())
config_dir = os.path.dirname(config_file)
cmd = os.path.join(config_dir, "buildnml")
if (logging.getLogger().level == logging.DEBUG):
run_cmd("PREVIEW_NML=1 %s %s" % (cmd, caseroot))
else:
run_cmd("%s %s" % (cmd, caseroot))
# Save namelists to docdir
if (not os.path.isdir(docdir)):
os.makedirs(docdir)
try:
with open(os.path.join(docdir, "README"), "w") as fd:
fd.write(" CESM Resolved Namelist Files\n For documentation only DO NOT MODIFY\n")
except (OSError, IOError) as e:
expect(False, "Failed to write %s/README: %s" % (docdir, e))
for cpglob in ["*_in_[0-9]*", "*modelio*", "*_in",
"*streams*txt*", "*stxt", "*maps.rc", "*cism.config*"]:
for file_to_copy in glob.glob(os.path.join(rundir, cpglob)):
logging.debug("Copy file from '%s' to '%s'" % (file_to_copy, docdir))
shutil.copy2(file_to_copy, docdir)
# Copy over chemistry mechanism docs if they exist
if (os.path.isdir(os.path.join(casebuild, "camconf"))):
for file_to_copy in glob.glob(os.path.join(casebuild, "camconf", "*chem_mech*")):
shutil.copy2(file_to_copy, docdir)
def case_build(caseroot, case=None, sharedlib_only=False, model_only=False):
###############################################################################
t1 = time.time()
expect(not (sharedlib_only and model_only),
"Contradiction: both sharedlib_only and model_only")
logger.info("sharedlib_only is %s" % sharedlib_only)
logger.info("model_only is %s" % model_only)
expect(os.path.isdir(caseroot), "'%s' is not a valid directory" % caseroot)
os.chdir(caseroot)
expect(os.path.exists("case.run"),
"ERROR: must invoke case.setup script before calling build script ")
case = Case() if case is None else case
cimeroot = case.get_value("CIMEROOT")
comp_classes = case.get_value("COMP_CLASSES").split(',')
if not sharedlib_only:
check_all_input_data(case)
run_cmd("./Tools/check_lockedfiles --caseroot %s" % caseroot)
# Retrieve relevant case data
# This environment variable gets set for cesm Make and
# needs to be unset before building again.
if "MODEL" in os.environ.keys():
del os.environ["MODEL"]
build_threaded = case.get_value("BUILD_THREADED")
casetools = case.get_value("CASETOOLS")
exeroot = case.get_value("EXEROOT")
incroot = case.get_value("INCROOT")
libroot = case.get_value("LIBROOT")
sharedlibroot = case.get_value("SHAREDLIBROOT")
complist = []
for comp_class in comp_classes:
if comp_class == "DRV":
comp_class = "CPL"
ninst = 1
config_dir = None
else:
ninst = case.get_value("NINST_%s"%comp_class)
config_dir = os.path.dirname(case.get_value("CONFIG_%s_FILE"%comp_class))
comp = case.get_value("COMP_%s"%comp_class)
thrds = case.get_value("NTHRDS_%s"%comp_class)
complist.append((comp_class.lower(), comp, thrds, ninst, config_dir ))
os.environ["COMP_%s"%comp_class] = comp
machines_file = case.get_value("MACHINES_SPEC_FILE")
ocn_submodel = case.get_value("OCN_SUBMODEL")
profile_papi_enable = case.get_value("PROFILE_PAPI_ENABLE")
compiler = case.get_value("COMPILER")
comp_interface = case.get_value("COMP_INTERFACE")
mpilib = case.get_value("MPILIB")
use_esmf_lib = case.get_value("USE_ESMF_LIB")
debug = case.get_value("DEBUG")
ninst_build = case.get_value("NINST_BUILD")
smp_value = case.get_value("SMP_VALUE")
clm_use_petsc = case.get_value("CLM_USE_PETSC")
cism_use_trilinos = case.get_value("CISM_USE_TRILINOS")
mpasli_use_albany = case.get_value("MPASLI_USE_ALBANY")
clm_config_opts = case.get_value("CLM_CONFIG_OPTS")
cam_config_opts = case.get_value("CAM_CONFIG_OPTS")
pio_config_opts = case.get_value("PIO_CONFIG_OPTS")
ninst_value = case.get_value("NINST_VALUE")
mach = case.get_value("MACH")
os_ = case.get_value("OS")
# Load some params into env
os.environ["CIMEROOT"] = cimeroot
os.environ["CASETOOLS"] = casetools
os.environ["EXEROOT"] = exeroot
os.environ["INCROOT"] = incroot
os.environ["LIBROOT"] = libroot
os.environ["SHAREDLIBROOT"] = sharedlibroot
os.environ["CASEROOT"] = caseroot
os.environ["COMPILER"] = compiler
os.environ["COMP_INTERFACE"] = comp_interface
os.environ["NINST_VALUE"] = str(ninst_value)
os.environ["BUILD_THREADED"] = stringify_bool(build_threaded)
os.environ["MACH"] = mach
os.environ["USE_ESMF_LIB"] = stringify_bool(use_esmf_lib)
os.environ["MPILIB"] = mpilib
os.environ["DEBUG"] = stringify_bool(debug)
os.environ["OS"] = os_
os.environ["CLM_CONFIG_OPTS"] = clm_config_opts if clm_config_opts is not None else ""
os.environ["CAM_CONFIG_OPTS"] = cam_config_opts if cam_config_opts is not None else ""
os.environ["PIO_CONFIG_OPTS"] = pio_config_opts if pio_config_opts is not None else ""
os.environ["OCN_SUBMODEL"] = ocn_submodel if ocn_submodel is not None else ""
os.environ["PROFILE_PAPI_ENABLE"] = stringify_bool(profile_papi_enable) if profile_papi_enable is not None else ""
os.environ["CLM_USE_PETSC"] = stringify_bool(clm_use_petsc) if clm_use_petsc is not None else ""
os.environ["CISM_USE_TRILINOS"] = stringify_bool(cism_use_trilinos) if cism_use_trilinos is not None else ""
os.environ["MPASLI_USE_ALBANY"] = stringify_bool(mpasli_use_albany) if mpasli_use_albany is not None else ""
# This is a timestamp for the build , not the same as the testid,
# and this case may not be a test anyway. For a production
# experiment there may be many builds of the same case.
lid = run_cmd("date +%y%m%d-%H%M%S")
os.environ["LID"] = lid
# Set the overall USE_PETSC variable to TRUE if any of the
# XXX_USE_PETSC variables are TRUE.
# For now, there is just the one CLM_USE_PETSC variable, but in
# the future there may be others -- so USE_PETSC will be true if
# ANY of those are true.
use_petsc = clm_use_petsc
case.set_value("USE_PETSC", use_petsc)
os.environ["USE_PETSC"] = stringify_bool(use_petsc)
# Set the overall USE_TRILINOS variable to TRUE if any of the
# XXX_USE_TRILINOS variables are TRUE.
# For now, there is just the one CISM_USE_TRILINOS variable, but in
# the future there may be others -- so USE_TRILINOS will be true if
# ANY of those are true.
use_trilinos = False if cism_use_trilinos is None else cism_use_trilinos
case.set_value("USE_TRILINOS", use_trilinos)
os.environ["USE_TRILINOS"] = stringify_bool(use_trilinos)
# Set the overall USE_ALBANY variable to TRUE if any of the
# XXX_USE_ALBANY variables are TRUE.
# For now, there is just the one MPASLI_USE_ALBANY variable, but in
# the future there may be others -- so USE_ALBANY will be true if
# ANY of those are true.
use_albany = mpasli_use_albany
case.set_value("USE_ALBANY", use_albany)
os.environ["USE_ALBANY"] = stringify_bool(use_albany)
# Load modules
env_module = case._get_env("mach_specific")
env_module.load_env_for_case(compiler=case.get_value("COMPILER"),
debug=case.get_value("DEBUG"),
mpilib=case.get_value("MPILIB"))
# Need to flush case xml to disk before calling preview_namelists
case.flush()
if not sharedlib_only:
preview_namelists(case)
build_checks(case, build_threaded, comp_interface, use_esmf_lib, debug, compiler, mpilib,
sharedlibroot, complist, ninst_build, smp_value)
t2 = time.time()
logs = []
if not model_only:
logs = build_libraries(case, exeroot, caseroot, cimeroot, libroot, mpilib, lid,
machines_file)
if not sharedlib_only:
logs.extend(build_model(case, build_threaded, exeroot, clm_config_opts, incroot, complist,
lid, caseroot, cimeroot, use_esmf_lib, comp_interface))
if not sharedlib_only:
post_build(case, logs)
t3 = time.time()
logger.info("Time spent not building: %f sec" % (t2 - t1))
logger.info("Time spent building: %f sec" % (t3 - t2))
def case_build(caseroot, case=None, testmode=False, sharedlib_only=False, model_only=False):
###############################################################################
t1 = time.time()
expect(not (sharedlib_only and model_only),
"Contradiction: both sharedlib_only and model_only")
logger.info("sharedlib_only is %s" % sharedlib_only)
logger.info("model_only is %s" % model_only)
expect(os.path.isdir(caseroot), "'%s' is not a valid directory" % caseroot)
os.chdir(caseroot)
expect(os.path.exists("case.run"),
"ERROR: must invoke case.setup script before calling build script ")
case = Case() if case is None else case
testcase = case.get_value("TESTCASE")
cimeroot = case.get_value("CIMEROOT")
expect(not (testcase is not None and
os.path.exists("%s/scripts/Testing/Testcases/%s_build.csh" %
(cimeroot, testcase)) and not testmode),
"%s build must be invoked via case.testbuild script" % testcase)
if not sharedlib_only:
check_all_input_data(case)
run_cmd("./Tools/check_lockedfiles --caseroot %s" % caseroot)
# Retrieve relevant case data
build_threaded = case.get_value("BUILD_THREADED")
casetools = case.get_value("CASETOOLS")
exeroot = case.get_value("EXEROOT")
incroot = case.get_value("INCROOT")
libroot = case.get_value("LIBROOT")
sharedlibroot = case.get_value("SHAREDLIBROOT")
comp_atm = case.get_value("COMP_ATM")
comp_lnd = case.get_value("COMP_LND")
comp_ice = case.get_value("COMP_ICE")
comp_ocn = case.get_value("COMP_OCN")
comp_glc = case.get_value("COMP_GLC")
comp_wav = case.get_value("COMP_WAV")
comp_rof = case.get_value("COMP_ROF")
compiler = case.get_value("COMPILER")
comp_interface = case.get_value("COMP_INTERFACE")
mpilib = case.get_value("MPILIB")
use_esmf_lib = case.get_value("USE_ESMF_LIB")
debug = case.get_value("DEBUG")
ninst_build = case.get_value("NINST_BUILD")
smp_value = case.get_value("SMP_VALUE")
clm_use_petsc = case.get_value("CLM_USE_PETSC")
cism_use_trilinos = case.get_value("CISM_USE_TRILINOS")
mpasli_use_albany = case.get_value("MPASLI_USE_ALBANY")
clm_config_opts = case.get_value("CLM_CONFIG_OPTS")
cam_config_opts = case.get_value("CAM_CONFIG_OPTS")
pio_config_opts = case.get_value("PIO_CONFIG_OPTS")
ninst_value = case.get_value("NINST_VALUE")
mach = case.get_value("MACH")
os_ = case.get_value("OS")
comp_cpl = case.get_value("COMP_CPL")
machines_file = case.get_value("MACHINES_SPEC_FILE")
ocn_submodel = case.get_value("OCN_SUBMODEL")
profile_papi_enable = case.get_value("PROFILE_PAPI_ENABLE")
nthrds_cpl = int(case.get_value("NTHRDS_CPL"))
nthrds_atm = int(case.get_value("NTHRDS_ATM"))
nthrds_lnd = int(case.get_value("NTHRDS_LND"))
nthrds_ice = int(case.get_value("NTHRDS_ICE"))
nthrds_ocn = int(case.get_value("NTHRDS_OCN"))
nthrds_glc = int(case.get_value("NTHRDS_GLC"))
nthrds_wav = int(case.get_value("NTHRDS_WAV"))
nthrds_rof = int(case.get_value("NTHRDS_ROF"))
# Load some params into env
os.environ["CIMEROOT"] = cimeroot
os.environ["CASETOOLS"] = casetools
os.environ["EXEROOT"] = exeroot
os.environ["INCROOT"] = incroot
os.environ["LIBROOT"] = libroot
os.environ["SHAREDLIBROOT"] = sharedlibroot
os.environ["CASEROOT"] = caseroot
os.environ["COMPILER"] = compiler
os.environ["COMP_INTERFACE"] = comp_interface
os.environ["NINST_VALUE"] = ninst_value
os.environ["BUILD_THREADED"] = build_threaded
os.environ["MACH"] = mach
os.environ["USE_ESMF_LIB"] = use_esmf_lib
os.environ["MPILIB"] = mpilib
os.environ["DEBUG"] = debug
os.environ["OS"] = os_
os.environ["COMP_CPL"] = comp_cpl
os.environ["COMP_ATM"] = comp_atm
os.environ["COMP_LND"] = comp_lnd
os.environ["COMP_ICE"] = comp_ice
os.environ["COMP_OCN"] = comp_ocn
os.environ["COMP_GLC"] = comp_glc
os.environ["COMP_WAV"] = comp_wav
os.environ["COMP_ROF"] = comp_rof
os.environ["CLM_CONFIG_OPTS"] = clm_config_opts if clm_config_opts is not None else ""
os.environ["CAM_CONFIG_OPTS"] = cam_config_opts if cam_config_opts is not None else ""
os.environ["PIO_CONFIG_OPTS"] = pio_config_opts if pio_config_opts is not None else ""
os.environ["OCN_SUBMODEL"] = ocn_submodel if ocn_submodel is not None else ""
os.environ["PROFILE_PAPI_ENABLE"] = profile_papi_enable if profile_papi_enable is not None else ""
os.environ["CLM_USE_PETSC"] = clm_use_petsc if clm_use_petsc is not None else ""
os.environ["CISM_USE_TRILINOS"] = cism_use_trilinos if cism_use_trilinos is not None else ""
os.environ["MPASLI_USE_ALBANY"] = mpasli_use_albany if mpasli_use_albany is not None else ""
# This is a timestamp for the build , not the same as the testid,
# and this case may not be a test anyway. For a production
# experiment there may be many builds of the same case.
lid = run_cmd("date +%y%m%d-%H%M%S")
os.environ["LID"] = lid
# Set the overall USE_PETSC variable to TRUE if any of the
# XXX_USE_PETSC variables are TRUE.
# For now, there is just the one CLM_USE_PETSC variable, but in
# the future there may be others -- so USE_PETSC will be true if
# ANY of those are true.
use_petsc = "TRUE" if clm_use_petsc == "TRUE" else "FALSE"
case.set_value("USE_PETSC", use_petsc)
os.environ["USE_PETSC"] = use_petsc
# Set the overall USE_TRILINOS variable to TRUE if any of the
# XXX_USE_TRILINOS variables are TRUE.
# For now, there is just the one CISM_USE_TRILINOS variable, but in
# the future there may be others -- so USE_TRILINOS will be true if
# ANY of those are true.
use_trilinos = "TRUE" if cism_use_trilinos == "TRUE" else "FALSE"
case.set_value("USE_TRILINOS", use_trilinos)
os.environ["USE_TRILINOS"] = use_trilinos
# Set the overall USE_ALBANY variable to TRUE if any of the
# XXX_USE_ALBANY variables are TRUE.
# For now, there is just the one MPASLI_USE_ALBANY variable, but in
# the future there may be others -- so USE_ALBANY will be true if
# ANY of those are true.
use_albany = "TRUE" if mpasli_use_albany == "TRUE" else "FALSE"
case.set_value("USE_ALBANY", use_albany)
os.environ["USE_ALBANY"] = use_albany
# Load modules
env_module = EnvModule(mach, compiler, cimeroot, caseroot, mpilib, debug)
env_module.load_env_for_case()
# Need to flush case xml to disk before calling preview_namelists
case.flush()
if not sharedlib_only:
preview_namelists(case=case)
build_checks(case, build_threaded, comp_interface, use_esmf_lib, debug, compiler, mpilib,
sharedlibroot, nthrds_cpl, nthrds_atm, nthrds_lnd, nthrds_ice, nthrds_ocn,
nthrds_glc, nthrds_wav, nthrds_rof, ninst_build, smp_value)
t2 = time.time()
logs = []
if not model_only:
logs = build_libraries(exeroot, caseroot, cimeroot, libroot, mpilib, lid, machines_file)
if sharedlib_only and comp_lnd == "clm" and not "clm4_0" in clm_config_opts:
logging.info(" - Building clm4_5/clm5_0 Library ")
esmfdir = "esmf" if use_esmf_lib == "TRUE" else "noesmf"
sharedpath = os.environ["SHAREDPATH"]
bldroot = os.path.join(sharedpath, comp_interface, esmfdir)
objdir = os.path.join(bldroot, "lnd", "obj")
libdir = os.path.join(bldroot, "lib")
file_build = os.path.join(exeroot, "lnd.bldlog.%s" % lid)
config_lnd_dir = os.path.dirname(case.get_value("CONFIG_LND_FILE"))
results = []
for ndir in [bldroot, objdir, libdir]:
if(not os.path.isdir(ndir)):
os.makedirs(ndir)
_build_model_thread(config_lnd_dir, caseroot, bldroot, "clm", file_build,
exeroot, "lnd", "clm", objdir, incroot, results)
if not sharedlib_only:
logs.extend(build_model(case, build_threaded, exeroot, clm_config_opts, incroot,
comp_atm, comp_lnd, comp_ice, comp_ocn, comp_glc, comp_wav, comp_rof,
nthrds_atm, nthrds_lnd, nthrds_ice, nthrds_ocn, nthrds_glc, nthrds_wav, nthrds_rof,
lid, caseroot, cimeroot, use_esmf_lib, comp_interface))
if not sharedlib_only:
post_build(case, logs)
t3 = time.time()
logger.info("Time spent not building: %f sec" % (t2 - t1))
logger.info("Time spent building: %f sec" % (t3 - t2))
def check_input_data(case=None, svn_loc=None, input_data_root=None, data_list_dir="Buildconf", download=False):
"""
Return True if no files missing
"""
# Fill in defaults as needed
case = Case() if case is None else case
svn_loc = SVN_LOCS[get_model()] if svn_loc is None else svn_loc
input_data_root = case.get_value("DIN_LOC_ROOT") if input_data_root is None else input_data_root
expect(os.path.isdir(input_data_root), "Invalid input_data_root directory: '%s'" % input_data_root)
expect(os.path.isdir(data_list_dir), "Invalid data_list_dir directory: '%s'" % data_list_dir)
data_list_files = find_files(data_list_dir, "*.input_data_list")
expect(data_list_files, "No .input_data_list files found in dir '%s'" % data_list_dir)
no_files_missing = True
for data_list_file in data_list_files:
logging.info("Loading input file: '%s'" % data_list_file)
with open(data_list_file, "r") as fd:
lines = fd.readlines()
for line in lines:
line = line.strip()
if (line and not line.startswith("#")):
tokens = line.split('=')
description, full_path = tokens[0].strip(), tokens[1].strip()
if(full_path):
# expand xml variables
full_path = case.get_resolved_value(full_path)
rel_path = full_path.replace(input_data_root, "")
# There are some special values of rel_path that
# we need to ignore - some of the component models
# set things like 'NULL' or 'same_as_TS' -
# basically if rel_path does not contain '/' (a
# directory tree) you can assume it's a special
# value and ignore it (perhaps with a warning)
if ("/" in rel_path and not os.path.exists(full_path)):
model = os.path.basename(data_list_file).split('.')[0]
logging.warning("Model %s missing file %s = '%s'" % (model,description,full_path))
if (download):
success = download_if_in_repo(svn_loc, input_data_root, rel_path)
if (not success):
# If ACME, try CESM repo as backup
if (get_model() == "acme" and svn_loc != SVN_LOCS["cesm"]):
success = download_if_in_repo(SVN_LOCS["cesm"], input_data_root, rel_path)
if (not success):
no_files_missing = False
else:
no_files_missing = False
else:
no_files_missing = False
else:
logging.info("Already had input file: '%s'" % full_path)
else:
model = os.path.basename(data_list_file).split('.')[0]
logging.warning("Model %s no file specified for %s"%(model,description))
return no_files_missing
def build_data_nml(argv, compclass):
###############################################################################
caseroot = parse_input(argv)
case = Case(caseroot)
cimeroot = case.get_value("CIMEROOT")
rundir = case.get_value("RUNDIR")
ninst = case.get_value("NINST_%s" % compclass.upper())
compname = "d" + compclass
confdir = os.path.join(caseroot,"Buildconf",compname + "conf")
if not os.path.isdir(confdir):
os.makedirs(confdir)
inst_string = ""
inst_counter = 1
while (inst_counter <= ninst):
# determine instance string
inst_string = ""
if ninst > 1:
inst_string = '_' + '%04d' % inst_counter
# If multi-instance case does not have restart file, use
# single-case restart for each instance
rpointer = "rpointer." + compname
if (os.path.isfile(os.path.join(rundir,rpointer)) and
(not os.path.isfile(os.path.join(rundir,rpointer+inst_string)))):
shutil.copy(os.path.isfile(os.path.join(rundir,rpointer),
os.path.join(rundir,rpointer+inst_string)))
# create namelist output infile using user_nl_file as input
user_nl_file = os.path.join(caseroot, "user_nl_" + compname + inst_string)
expect(os.path.isfile(user_nl_file),
"Missing required user_nl_file %s " %(user_nl_file))
namelist_infile = os.path.join(confdir, "cesm_namelist")
create_namelist_infile(case, user_nl_file, namelist_infile)
# call build-namelist
user_xml_dir = os.path.join(caseroot, "SourceMods", "src." + compname)
inst_string_label = inst_string
if not inst_string_label:
inst_string_label = "\"\""
bldnamelist = os.path.join(cimeroot, "components", "data_comps", compname, "bld", "build-namelist")
cmd = "%s -caseroot %s -cimeroot %s -inst_string %s -infile %s -user_xml_dir %s" \
% (bldnamelist, caseroot, cimeroot, inst_string_label, namelist_infile, user_xml_dir)
rc, out, err = run_cmd(cmd, from_dir=confdir, ok_to_fail=True)
expect(rc==0,"Command %s failed rc=%d\nout=%s\nerr=%s"%(cmd,rc,out,err))
# copy namelist files and stream text files, to rundir
if os.path.isdir(rundir):
filename = compname + "_in"
file_src = os.path.join(confdir, filename)
file_dest = os.path.join(rundir, filename)
if inst_string:
file_dest += inst_string
shutil.copy(file_src,file_dest)
filename = compname + "_" + compclass + "_in"
file_src = os.path.join(confdir, filename)
file_dest = os.path.join(rundir, filename)
if inst_string:
file_dest += inst_string
shutil.copy(file_src,file_dest)
for txtfile in glob.glob(os.path.join(confdir, "*txt*")):
shutil.copy(txtfile, rundir)
# increment instance counter
inst_counter = inst_counter + 1
