def load(self):
import yaml
try:
config_file_map = yaml.load(open(self.path, 'r'))
except:
raise Exception("Error importing file - %s , Make"
" sure it is in correct yaml format")
for page in self.nb.get_page_list():
ctrl_list = page.page.get_ctrl_list()
for ctrl in ctrl_list:
name = ctrl.get_name()
val = config_file_map.get(str(name))
sample_list = ctrl.get_values()
s_map = dict((v, k) for k, v in substitution_map.iteritems())
if val:
if isinstance(val, list):
if ctrl.get_datatype() == 8:
value = []
for item in val:
data = ""
for k, v in item.iteritems():
if v == 1 and k in sample_list:
if data:
data = data + "," + k
else:
data = k
value.append(data)
elif ctrl.get_datatype() == 6:
value = []
for v in val:
value.append(str(v))
elif ctrl.get_datatype() == 3:
value = [
sample_list[i] for i, x in enumerate(val)
if x == True
]
elif ctrl.get_datatype() == 4:
if 1 in val and 0 in val:
val = [10]
if 'ANTS' in val and 'FSL' in val:
val = [11]
if '3dAutoMask' in val and 'BET' in val:
val = [12]
value = [
s_map.get(item) for item in val
if s_map.get(item) != None
]
if not value:
value = [str(item) for item in val]
elif ctrl.get_datatype() == 5 and \
ctrl.get_type() == 6:
value = [sample_list[v] for v in val]
elif ctrl.get_datatype() == 9:
value = val[0] # pass the dictionary straight up
else:
value = None
for v in val:
if value:
value = value + "," + str(v)
else:
value = str(v)
else:
if ctrl.get_datatype() == 2 and \
ctrl.get_type() == 0 and \
str(val) not in sample_list:
value = sample_list[val]
else:
value = str(val)
else:
value = ""
ctrl.set_value(value)
def load(self):
import yaml
try:
config_file_map = yaml.load(open(self.path, 'r'))
except:
raise Exception("Error importing file - %s , Make"
" sure it is in correct yaml format")
#for config in config_file_map:
# print "\n\n config: ", config, " selection: ", config_file_map[config]
for page in self.nb.get_page_list():
ctrl_list = page.page.get_ctrl_list()
for ctrl in ctrl_list:
name = ctrl.get_name()
val = config_file_map.get(str(name))
#print "loading ctrl ->", name, "->", val
sample_list = ctrl.get_values()
#print "sample_list -->", sample_list
s_map = dict((v, k)
for k, v in substitution_map.iteritems())
if val:
if isinstance(val, list):
if ctrl.get_datatype() == 8:
value = []
for item in val:
data = ""
for k, v in item.iteritems():
if v == 1 and k in sample_list:
if data:
data = data + "," + k
else:
data = k
value.append(data)
elif ctrl.get_datatype() == 6:
value = []
for v in val:
value.append(str(v))
elif ctrl.get_datatype() == 3:
value = [sample_list[i]
for i, x in enumerate(val) if x == True]
elif ctrl.get_datatype() == 4:
if 1 in val and 0 in val:
val = [10]
if 'ANTS' in val and 'FSL' in val:
val = [11]
if '3dAutoMask' in val and 'BET' in val:
val = [12]
value = [s_map.get(item)
for item in val if s_map.get(item) != None]
if not value:
value = [ str(item) for item in val]
elif ctrl.get_datatype() == 5 and ctrl.get_type() == 6:
value = [sample_list[v] for v in val]
else:
value = None
for v in val:
if value:
value = value + "," + str(v)
else:
value = str(v)
else:
if ctrl.get_datatype() == 2 and ctrl.get_type() == 0 and\
str(val) not in sample_list:
value = sample_list[val]
else:
value = str(val)
else:
value = ""
#print "setting value in ctrl -->", value
#print "type -->", type(value)
ctrl.set_value(value)
def load(self):
import yaml
try:
config_file_map = yaml.load(open(self.path, 'r'))
except:
raise Exception("Error importing file - %s , Make"
" sure it is in correct yaml format")
#for config in config_file_map:
# print "\n\n config: ", config, " selection: ", config_file_map[config]
for page in self.nb.get_page_list():
ctrl_list = page.page.get_ctrl_list()
for ctrl in ctrl_list:
name = ctrl.get_name()
val = config_file_map.get(str(name))
#print "loading ctrl ->", name, "->", val
sample_list = ctrl.get_values()
#print "sample_list -->", sample_list
s_map = dict((v, k) for k, v in substitution_map.iteritems())
if val:
if isinstance(val, list):
if ctrl.get_datatype() == 8:
value = []
for item in val:
data = ""
for k, v in item.iteritems():
if v == 1 and k in sample_list:
if data:
data = data + "," + k
else:
data = k
value.append(data)
elif ctrl.get_datatype() == 6:
value = []
for v in val:
value.append(str(v))
elif ctrl.get_datatype() == 3:
value = [
sample_list[i] for i, x in enumerate(val)
if x == True
]
elif ctrl.get_datatype() == 4:
if 1 in val and 0 in val:
val = [10]
if 'ANTS' in val and 'FSL' in val:
val = [11]
value = [
s_map.get(item) for item in val
if s_map.get(item) != None
]
if not value:
value = [str(item) for item in val]
elif ctrl.get_datatype() == 5 and ctrl.get_type() == 6:
value = [sample_list[v] for v in val]
else:
value = None
for v in val:
if value:
value = value + "," + str(v)
else:
value = str(v)
else:
if ctrl.get_datatype() == 2 and ctrl.get_type() == 0 and\
str(val) not in sample_list:
value = sample_list[val]
else:
value = str(val)
else:
value = ""
#print "setting value in ctrl -->", value
#print "type -->", type(value)
ctrl.set_value(value)
